Gene: AT2G47990

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G47990
  • Transcript Identifier AT2G47990.1
  • Gene Type Coding gene
  • Location Chr2 : 19637010-19638602 : negative

Gene Family Information

  • ID HOM05D005544
  • #Genes/#Species 138/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G47990.1
  • symbol SWA1
  • Alias EDA13,EMBRYO SAC DEVELOPMENT ARREST 13,EDA19,EMBRYO SAC DEVELOPMENT ARREST 19
  • full_name SLOW WALKER1
  • uniprot O82266

Descriptions

  • Description transducin family protein / WD-40 repeat family protein
  • Computational description SLOW WALKER1 (SWA1); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), U3 small nucleolar RNA-associated protein 15, C-terminal (InterPro:IPR018983), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 33528 Blast hits to 20320 proteins in 654 species: Archae - 34; Bacteria - 4945; Metazoa - 12077; Fungi - 7782; Plants - 4404; Viruses - 6; Other Eukaryotes - 4280 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045943
IBA
Gene Ontologypositive regulation of transcription by RNA polymerase I1
GO:0006364
IEA
GOA DatabaserRNA processing
GO:0006364
IMP
IBA
Gene OntologyrRNA processing1 2
GO:0006364
IEA
InterProrRNA processing
GO:0051301
IEA
GOA Databasecell division
GO:0007049
IEA
GOA Databasecell cycle
GO:0009561
IMP
Gene Ontologymegagametogenesis3
GO:0009553
IMP
Gene Ontologyembryo sac development3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003729
IDA
Gene OntologymRNA binding4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
IEA
GOA Databasenucleolus
GO:0005730
IDA
IBA
Gene Ontologynucleolus1 2
GO:0005730
IEA
InterPronucleolus
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0080008
ISS
Gene OntologyCul4-RING E3 ubiquitin ligase complex5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001680 WD40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR018983 U3 small nucleolar RNA-associated protein 15, C-terminal
IPR020472 G-protein beta WD-40 repeat
IPR036322 WD40-repeat-containing domain superfamily
Mapman id Description
17.1.3.2.1.2.3 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear assembly.UtpA module.assembly factor (SWA1)