Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 1.8e-65 252.7 151 100.0
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 3.3e-59 231.9 141 100.0
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 1.0e-52 210.3 146 91.8
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 5.1e-52 208.0 138 90.6
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 5.1e-52 208.0 138 89.1
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 3.3e-51 205.3 143 88.1
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 7.4e-51 204.1 151 83.4
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 1.1e-49 200.3 139 90.6
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 1.2e-48 196.8 146 85.6
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 1.5e-48 196.4 145 82.1
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 2.0e-48 196.1 139 81.3
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 2.0e-48 196.1 142 84.5
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 2.6e-48 195.7 141 87.9
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 2.6e-48 195.7 141 87.9
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 4.5e-48 194.9 142 88.7
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 4.5e-48 194.9 139 87.8
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 4.5e-48 194.9 139 87.8
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 4.5e-48 194.9 139 87.8
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 4.5e-48 194.9 142 86.6
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 5.8e-48 194.5 139 87.1
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 5.8e-48 194.5 138 80.4
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 1.0e-47 193.7 143 86.0
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 1.7e-47 193.0 139 79.1
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 2.2e-47 192.6 140 86.4
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 2.9e-47 192.2 139 88.5
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 2.9e-47 192.2 141 80.9
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 2.9e-47 192.2 141 80.9
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 2.9e-47 192.2 150 84.0
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 2.9e-47 192.2 141 85.8
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 2.9e-47 192.2 138 87.0
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 3.8e-47 191.8 146 80.1
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 3.8e-47 191.8 139 87.1
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 3.8e-47 191.8 145 87.6
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 4.9e-47 191.4 141 79.4
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 4.9e-47 191.4 142 88.0
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 6.5e-47 191.0 142 83.1
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 8.4e-47 190.7 146 83.6
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 8.4e-47 190.7 141 90.1
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 8.4e-47 190.7 141 80.1
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 1.1e-46 190.3 100 89.0
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 1.1e-46 190.3 140 84.3
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 1.9e-46 189.5 140 82.1
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 1.9e-46 189.5 143 84.6
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 2.5e-46 189.1 139 78.4
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 2.5e-46 189.1 138 84.8
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.5e-46 189.1 141 75.9
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 2.5e-46 189.1 147 81.0
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 3.2e-46 188.7 143 79.0
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 3.2e-46 188.7 139 85.6
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 3.2e-46 188.7 139 85.6
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 3.2e-46 188.7 144 82.6
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 3.2e-46 188.7 138 77.5
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 4.2e-46 188.3 145 84.1
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 5.5e-46 188.0 139 83.5
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 5.5e-46 188.0 103 85.4
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 5.5e-46 188.0 145 77.9
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 5.5e-46 188.0 142 77.5
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 7.1e-46 187.6 143 83.9
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 7.1e-46 187.6 145 79.3
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 7.1e-46 187.6 139 87.1
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 7.1e-46 187.6 141 72.3
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 7.1e-46 187.6 145 80.7
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 9.3e-46 187.2 139 84.9
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 9.3e-46 187.2 138 86.2
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 9.3e-46 187.2 139 84.2
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 1.2e-45 186.8 143 83.2
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 1.2e-45 186.8 142 80.3
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 1.6e-45 186.4 154 79.9
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 1.6e-45 186.4 140 80.7
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 2.1e-45 186.0 142 83.1
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 2.1e-45 186.0 140 85.7
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 2.1e-45 186.0 145 81.4
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 2.7e-45 185.7 141 86.5
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 3.5e-45 185.3 142 86.6
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 3.5e-45 185.3 140 83.6
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 3.5e-45 185.3 140 83.6
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 3.5e-45 185.3 138 81.9
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.5e-45 185.3 138 84.1
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.5e-45 185.3 138 84.1
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.5e-45 185.3 138 79.7
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 3.5e-45 185.3 141 77.3
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 4.6e-45 184.9 140 74.3
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 6.0e-45 184.5 145 81.4
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 6.0e-45 184.5 141 76.6
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 1.0e-44 183.7 145 71.7
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.0e-44 183.7 144 72.2
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 1.0e-44 183.7 139 76.3
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 1.0e-44 183.7 144 73.6
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 1.0e-44 183.7 141 83.7
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.3e-44 183.3 146 80.8
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.8e-44 183.0 138 83.3
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 1.8e-44 183.0 148 76.4
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 2.3e-44 182.6 141 78.7
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 2.3e-44 182.6 141 78.7
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 2.3e-44 182.6 141 78.7
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 2.3e-44 182.6 146 85.6
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 3.9e-44 181.8 141 83.7
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 3.9e-44 181.8 149 80.5
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 3.9e-44 181.8 151 79.5
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 5.1e-44 181.4 147 76.9
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 5.1e-44 181.4 146 81.5
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 5.1e-44 181.4 144 81.9
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 6.7e-44 181.0 100 87.0
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 6.7e-44 181.0 142 82.4
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 6.7e-44 181.0 140 82.9
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 6.7e-44 181.0 141 82.3
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 1.1e-43 180.3 103 83.5
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 1.1e-43 180.3 139 71.2
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 1.1e-43 180.3 139 78.4
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 1.5e-43 179.9 141 77.3
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 1.5e-43 179.9 146 76.7
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 1.5e-43 179.9 150 80.7
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 1.5e-43 179.9 146 76.7
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 1.5e-43 179.9 141 77.3
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 1.5e-43 179.9 146 82.2
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 2.5e-43 179.1 146 76.7
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 2.5e-43 179.1 144 75.0
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 3.3e-43 178.7 149 79.9
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 3.3e-43 178.7 149 79.9
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 3.3e-43 178.7 149 79.9
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 3.3e-43 178.7 139 82.7
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 4.3e-43 178.3 147 75.5
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 7.4e-43 177.6 151 80.8
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 7.4e-43 177.6 143 76.2
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 1.3e-42 176.8 151 80.8
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 1.6e-42 176.4 141 76.6
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 2.8e-42 175.6 146 77.4
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 6.3e-42 174.5 144 77.1
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 6.3e-42 174.5 146 78.1
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 6.3e-42 174.5 138 80.4
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 1.4e-41 173.3 146 76.7
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 1.4e-41 173.3 138 78.3
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 9.0e-41 170.6 144 70.8
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 2.0e-40 169.5 144 70.8
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 2.0e-40 169.5 150 73.3
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 2.6e-40 169.1 151 75.5
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 3.4e-40 168.7 140 75.7
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 4.5e-40 168.3 148 76.4
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 4.5e-40 168.3 141 74.5
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 1.0e-39 167.2 176 65.3
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 2.9e-39 165.6 100 76.0
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 5.0e-39 164.9 89 87.6
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 5.0e-39 164.9 91 85.7
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 1.2e-37 160.2 84 89.3
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 2.1e-37 159.5 89 82.0
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 1.8e-36 156.4 84 88.1
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 5.1e-36 154.8 141 72.3
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 1.1e-35 153.7 143 71.3
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 7.4e-35 151.0 81 86.4
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 1.4e-33 146.7 94 69.1
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 7.7e-32 141.0 139 71.9
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 1.1e-30 137.1 127 61.4
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 1.4e-28 130.2 80 75.0
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 1.1e-27 127.1 100 68.0
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 5.3e-25 118.2 60 93.3
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 1.7e-23 113.2 76 63.2
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 1.9e-22 109.8 56 92.9
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 2.1e-21 106.3 93 60.2
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 8.2e-18 94.4 97 46.4
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 4.1e-17 92.0 105 52.4
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 1.6e-16 90.1 105 51.4
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 1.6e-16 90.1 49 81.6
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 5.9e-16 88.2 98 49.0
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 4.4e-11 72.0 46 76.1
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 1.3e-10 70.5 44 79.5
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 1.3e-10 70.5 44 79.5
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 1.1e-09 67.4 44 77.3
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 1.1e-09 67.4 44 77.3
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 1.1e-09 67.4 44 77.3
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 5.3e-09 65.1 41 78.0
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 3.8e-07 58.9 34 82.4
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 1.9e-06 56.6 35 71.4


User provided reference genes

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