Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 4.1e-73 278.5 177 100.0
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 4.6e-61 238.4 158 92.4
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 2.4e-57 226.1 153 86.9
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 4.5e-56 221.9 176 82.4
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 1.7e-55 219.9 151 88.7
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 1.7e-55 219.9 154 88.3
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 5.0e-55 218.4 155 90.3
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 6.5e-55 218.0 148 87.2
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 6.5e-55 218.0 148 87.2
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 6.5e-55 218.0 148 87.2
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 1.1e-54 217.2 159 85.5
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 2.5e-54 216.1 152 87.5
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 3.2e-54 215.7 178 79.8
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 3.2e-54 215.7 153 88.2
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 3.2e-54 215.7 153 86.3
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 3.2e-54 215.7 153 85.0
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 7.2e-54 214.5 179 79.9
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 9.4e-54 214.2 165 72.1
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 1.2e-53 213.8 192 78.6
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 2.1e-53 213.0 153 76.5
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 2.1e-53 213.0 160 81.2
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 2.7e-53 212.6 156 79.5
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 2.7e-53 212.6 156 79.5
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 2.7e-53 212.6 181 82.3
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 3.6e-53 212.2 165 75.8
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 3.6e-53 212.2 165 75.8
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 3.6e-53 212.2 158 83.5
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 3.6e-53 212.2 199 71.4
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 4.7e-53 211.8 157 75.2
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 4.7e-53 211.8 157 79.0
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 4.7e-53 211.8 157 79.0
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 6.1e-53 211.5 159 79.2
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 6.1e-53 211.5 152 86.8
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 1.0e-52 210.7 151 85.4
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 1.0e-52 210.7 165 77.6
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 1.0e-52 210.7 166 75.9
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 1.0e-52 210.7 157 78.3
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 1.0e-52 210.7 155 83.9
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.4e-52 210.3 148 84.5
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 1.4e-52 210.3 158 75.3
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 1.4e-52 210.3 158 79.1
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 1.4e-52 210.3 177 72.9
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 2.3e-52 209.5 186 73.7
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 3.0e-52 209.1 181 74.0
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 3.0e-52 209.1 154 83.1
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 3.9e-52 208.8 178 83.1
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 5.2e-52 208.4 150 86.0
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 5.2e-52 208.4 150 86.0
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 5.2e-52 208.4 145 90.3
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 6.7e-52 208.0 155 72.9
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 6.7e-52 208.0 175 78.3
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 6.7e-52 208.0 159 78.0
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 6.7e-52 208.0 149 84.6
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 8.8e-52 207.6 153 79.7
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 8.8e-52 207.6 166 78.9
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 8.8e-52 207.6 182 73.6
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 1.1e-51 207.2 179 72.6
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 1.1e-51 207.2 155 81.9
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 1.5e-51 206.8 148 87.2
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 1.5e-51 206.8 166 75.3
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 1.5e-51 206.8 154 80.5
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 2.0e-51 206.5 163 82.2
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 2.0e-51 206.5 144 88.9
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.0e-51 206.5 177 79.1
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 2.0e-51 206.5 177 79.1
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 2.0e-51 206.5 152 84.2
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 2.0e-51 206.5 160 75.6
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 2.6e-51 206.1 108 88.9
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 2.6e-51 206.1 155 73.5
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 2.6e-51 206.1 165 76.4
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 3.3e-51 205.7 143 88.1
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 3.3e-51 205.7 143 88.1
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 4.4e-51 205.3 178 78.1
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 4.4e-51 205.3 177 80.8
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 5.7e-51 204.9 153 84.3
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 9.7e-51 204.1 155 72.3
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 9.7e-51 204.1 154 85.7
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 9.7e-51 204.1 151 79.5
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 9.7e-51 204.1 180 71.1
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 1.3e-50 203.8 191 66.5
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 1.3e-50 203.8 153 78.4
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 1.7e-50 203.4 170 72.9
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 2.2e-50 203.0 148 84.5
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 2.8e-50 202.6 162 79.6
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 2.8e-50 202.6 161 76.4
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 2.8e-50 202.6 178 73.0
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 2.8e-50 202.6 184 80.4
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 3.7e-50 202.2 165 75.2
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 4.8e-50 201.8 153 80.4
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 4.8e-50 201.8 159 74.8
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 4.8e-50 201.8 159 76.7
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 4.8e-50 201.8 159 76.7
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 8.2e-50 201.1 157 82.8
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 8.2e-50 201.1 165 74.5
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 8.2e-50 201.1 165 74.5
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 8.2e-50 201.1 153 83.0
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 1.1e-49 200.7 155 78.7
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 1.1e-49 200.7 144 72.2
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 1.4e-49 200.3 192 72.4
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 1.4e-49 200.3 159 76.7
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 1.8e-49 199.9 148 77.7
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 2.4e-49 199.5 167 68.3
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.4e-49 199.5 159 76.1
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 2.4e-49 199.5 178 75.8
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 3.1e-49 199.1 165 74.5
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 3.1e-49 199.1 165 74.5
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 3.1e-49 199.1 165 74.5
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 3.1e-49 199.1 150 82.7
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 3.1e-49 199.1 154 83.1
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 4.1e-49 198.7 180 75.6
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 4.1e-49 198.7 163 74.2
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 5.3e-49 198.4 147 81.6
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 7.0e-49 198.0 166 75.9
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 7.0e-49 198.0 143 76.9
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 9.1e-49 197.6 165 73.9
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 1.2e-48 197.2 158 69.6
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 1.2e-48 197.2 174 63.8
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 3.5e-48 195.7 164 78.0
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 1.0e-47 194.1 184 72.8
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 1.7e-47 193.4 142 84.5
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 2.9e-47 192.6 131 77.9
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 3.8e-47 192.2 154 72.7
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 3.8e-47 192.2 161 75.2
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 3.8e-47 192.2 217 54.4
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 5.0e-47 191.8 166 72.3
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 8.5e-47 191.0 165 69.7
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 8.5e-47 191.0 154 74.0
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 8.5e-47 191.0 115 77.4
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 1.5e-46 190.3 179 74.9
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 1.9e-46 189.9 179 73.2
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 2.5e-46 189.5 155 69.0
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 4.2e-46 188.7 154 74.0
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 1.6e-45 186.8 159 72.3
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 2.7e-45 186.0 148 79.7
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 4.7e-45 185.3 165 67.9
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 6.1e-45 184.9 148 78.4
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 8.0e-45 184.5 108 77.8
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 1.8e-44 183.3 157 72.0
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 2.3e-44 183.0 150 81.3
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 3.0e-44 182.6 109 78.0
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 1.5e-43 180.3 91 90.1
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 2.0e-43 179.9 158 71.5
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 2.0e-43 179.9 230 61.7
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 4.4e-43 178.7 93 89.2
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 1.7e-42 176.8 104 80.8
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 8.2e-42 174.5 90 90.0
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 8.2e-42 174.5 162 70.4
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 5.3e-41 171.8 89 87.6
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 7.2e-38 161.4 96 80.2
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 5.2e-36 155.2 175 68.6
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 1.5e-35 153.7 130 63.1
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 1.5e-35 153.7 107 65.4
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 3.8e-31 139.0 103 69.9
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 6.5e-31 138.3 80 76.2
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 4.4e-27 125.6 66 90.9
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 1.4e-25 120.6 76 65.8
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 5.4e-25 118.6 96 61.5
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 8.6e-23 111.3 57 91.2
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 8.0e-21 104.8 114 44.7
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 1.2e-19 100.9 131 54.2
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 2.2e-18 96.7 49 83.7
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 1.1e-17 94.4 113 50.4
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 1.8e-17 93.6 113 50.4
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 1.6e-13 80.5 49 77.6
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 1.6e-13 80.5 49 77.6
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 4.7e-13 79.0 58 69.0
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 1.4e-12 77.4 49 75.5
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 1.4e-12 77.4 49 75.5
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 1.4e-12 77.4 49 75.5
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 1.4e-12 77.4 45 82.2
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 3.4e-11 72.8 39 87.2
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 2.3e-07 60.1 35 74.3


User provided reference genes

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