Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1662.5 817 100.0
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1578.9 817 95.5
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1498.4 819 90.6
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1421.8 818 84.7
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1395.6 822 82.5
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1379.8 822 82.5
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1376.7 818 82.2
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1374.0 817 81.5
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1372.1 818 81.1
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1372.1 820 82.8
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1371.3 820 82.7
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1370.5 820 82.4
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1369.0 818 81.5
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1367.4 818 82.3
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1366.7 820 81.3
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1366.3 818 81.7
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1365.1 820 82.3
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1362.8 823 81.5
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1360.5 818 80.8
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1359.4 822 80.9
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1359.4 818 81.9
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1357.0 818 80.3
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1355.9 824 80.5
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1354.0 820 79.1
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1353.2 820 81.6
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1351.7 822 80.7
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1350.1 822 80.5
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1346.6 816 79.2
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1345.5 816 80.5
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1345.5 822 80.0
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1340.9 818 79.3
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1339.3 817 79.7
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1339.3 815 79.0
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1338.9 819 79.4
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1337.4 818 79.5
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1335.5 819 78.6
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1334.7 817 79.2
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1329.3 817 79.1
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1325.5 817 78.6
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1324.3 819 78.6
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1320.8 822 78.2
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1318.5 822 78.6
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1313.9 822 78.5
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1313.1 817 78.2
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1311.6 828 79.3
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1308.9 831 76.7
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1305.8 818 78.0
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1304.7 818 78.2
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1302.3 823 78.3
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1300.8 816 77.1
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1299.3 818 78.5
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1292.3 816 76.8
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1290.8 894 72.0
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1288.9 817 76.6
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1288.1 817 76.6
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1285.4 820 76.3
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1284.2 817 76.1
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1283.5 818 76.9
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1283.1 818 76.3
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1282.3 817 76.0
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1281.5 823 76.5
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1280.0 818 76.0
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1278.8 818 76.2
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1278.5 817 75.8
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1278.5 817 75.8
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1278.1 817 75.4
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1275.8 817 75.6
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1275.4 817 76.7
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1274.6 818 75.7
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1274.2 818 75.3
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1271.1 818 76.4
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1269.2 819 76.2
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1269.2 808 76.7
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1267.3 817 75.3
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1261.1 817 75.2
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1259.6 817 75.2
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1259.2 823 76.2
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1252.3 818 75.4
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1252.3 788 77.8
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1250.7 817 74.3
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1248.4 867 71.0
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1248.4 819 75.5
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1244.6 817 73.6
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1241.1 824 73.7
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1240.7 819 74.6
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1239.2 817 74.1
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1234.9 816 73.9
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1234.9 811 73.7
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1228.8 869 70.5
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1219.5 822 72.4
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1218.8 820 75.5
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1215.7 871 69.1
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1210.7 816 72.7
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1204.5 822 73.0
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1196.0 822 71.2
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1194.5 818 72.2
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1192.2 821 70.4
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1189.5 822 71.9
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1189.1 776 75.1
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1186.4 819 71.4
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1182.9 820 70.1
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1179.5 924 65.7
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1172.1 816 69.4
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1167.9 973 63.4
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1164.1 823 72.1
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1155.2 969 63.0
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1146.0 817 69.8
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1145.2 792 71.2
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1120.1 823 71.2
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1100.5 827 64.7
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1090.1 818 67.2
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 0.0e+00 1079.7 834 64.4
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 4.4e-291 1004.6 810 60.7
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 9.5e-286 986.9 616 78.6
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 5.8e-283 977.6 815 61.0
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 4.5e-243 845.1 804 58.2
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 1.7e-186 657.1 392 81.1
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 1.6e-184 650.6 867 42.8
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 4.4e-166 589.3 842 40.9
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 3.6e-160 569.7 819 43.0
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 7.8e-147 525.4 864 37.8
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 5.6e-145 519.2 955 33.9
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 3.0e-122 443.7 405 56.8
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 5.6e-121 439.5 316 68.4
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 7.4e-113 412.5 351 63.8
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 1.5e-110 404.8 274 70.1
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 3.6e-91 340.5 237 72.6
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 3.2e-76 290.8 195 72.8
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 4.2e-68 263.8 173 75.7
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 2.3e-61 241.5 310 45.2
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 4.7e-51 207.2 141 75.2
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 4.1e-47 194.1 191 59.7
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 6.4e-40 170.2 90 84.4
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 7.8e-38 163.3 103 75.7
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 2.8e-35 154.8 112 66.1
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 1.1e-34 152.9 269 40.9
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.8e-34 152.1 100 76.0
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 5.2e-34 150.6 97 70.1
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 4.9e-32 144.1 122 65.6
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 2.1e-30 138.7 180 47.8
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.3e-29 136.0 88 75.0
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 2.5e-28 131.7 118 56.8
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 2.6e-25 121.7 113 48.7
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 2.9e-24 118.2 262 32.4
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 3.2e-23 114.8 201 37.3
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 4.2e-23 114.4 178 41.6
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 2.1e-22 112.1 110 56.4
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 1.7e-21 109.0 65 83.1
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.2e-17 96.3 50 84.0
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 3.4e-17 94.7 59 76.3
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 1.3e-16 92.8 68 67.6
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 8.4e-16 90.1 73 64.4
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 1.9e-15 89.0 143 44.8
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 4.6e-14 84.3 43 86.0
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 6.7e-13 80.5 57 70.2
PGR044G0522 Punica granatum HOM05D000344 ORTHO05D003478 1.3e-11 76.3 508 23.4
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 8.1e-11 73.6 77 59.7
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 4.0e-10 71.2 125 36.8
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 2.6e-09 68.6 60 46.7
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 3.4e-09 68.2 57 63.2
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 2.9e-08 65.1 57 61.4
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 2.9e-08 65.1 57 61.4
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 6.4e-08 63.9 57 59.6
Nn8g40042 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.1e-07 63.2 33 90.9
Gohir.D05G317650 Gossypium hirsutum HOM05D003868 ORTHO05D017991 1.9e-07 62.4 54 63.0
Medtr4g115880 Medicago truncatula HOM05D000344 ORTHO05D003478 3.2e-07 61.6 339 23.9
Gohir.A09G086698 Gossypium hirsutum HOM05D003868 ORTHO05D017991 5.5e-07 60.8 54 61.1
Gohir.D03G046101 Gossypium hirsutum HOM05D003868 ORTHO05D017991 5.5e-07 60.8 54 61.1
Gohir.D05G358720 Gossypium hirsutum HOM05D003868 ORTHO05D017991 5.5e-07 60.8 54 61.1
Gohir.D13G088850 Gossypium hirsutum HOM05D003868 ORTHO05D017991 5.5e-07 60.8 54 61.1
Aqoxy2G03850 Aquilegia oxysepala HOM05D003912 ORTHO05D004409 2.1e-06 58.9 261 25.3
MCO15G019 Micromonas commoda HOM05D002714 ORTHO05D020415 7.9e-06 57.0 531 22.2


User provided reference genes

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