Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0073400 Salix brachista HOM05D002690 ORTHO05D005709 3.4e-158 561.6 281 100.0
Potri.011G089901 Populus trichocarpa HOM05D002690 ORTHO05D005709 8.5e-85 317.8 470 46.6
Potri.001G357800 Populus trichocarpa HOM05D002690 ORTHO05D005709 4.2e-84 315.5 472 45.1
Sabra11G0078900 Salix brachista HOM05D002690 ORTHO05D005709 8.5e-77 291.2 159 95.6
Nitab4.5_0011416g0020 Nicotiana tabacum HOM05D002690 ORTHO05D005709 1.2e-67 260.8 435 40.7
Dinv15926 Davidia involucrata HOM05D002690 ORTHO05D005709 8.0e-67 258.1 483 39.1
Cfa000832 Carpinus fangiana HOM05D002690 ORTHO05D005709 2.3e-66 256.5 478 39.3
MELO3C022129.2 Cucumis melo HOM05D002690 ORTHO05D005709 3.7e-64 249.2 482 38.6
MELO3C002805.2 Cucumis melo HOM05D002690 ORTHO05D005709 4.9e-64 248.8 496 38.3
CsaV3_5G039520 Cucumis sativus L. HOM05D002690 ORTHO05D005709 6.3e-64 248.4 486 38.9
arahy.Tifrunner.gnm1.ann1.9EB9RH Arachis hypogaea HOM05D002690 ORTHO05D005709 1.1e-63 247.7 443 39.1
arahy.Tifrunner.gnm1.ann1.XVC3D4 Arachis hypogaea HOM05D002690 ORTHO05D005709 1.1e-63 247.7 443 39.1
ClCG03G006290 Citrullus lanatus HOM05D002690 ORTHO05D005709 1.1e-63 247.7 482 39.4
Medtr2g029540 Medicago truncatula HOM05D002690 ORTHO05D005709 1.4e-63 247.3 485 38.6
ClCG08G001630 Citrullus lanatus HOM05D002690 ORTHO05D005709 7.0e-63 245.0 483 37.9
CiPaw.09G115900 Carya illinoinensis HOM05D002690 ORTHO05D005709 9.2e-63 244.6 468 38.9
Sed0021012 Sechium edule HOM05D002690 ORTHO05D005709 2.7e-62 243.0 485 37.9
EL10Ac8g19577 Beta vulgaris HOM05D002690 ORTHO05D005709 2.3e-61 240.0 435 39.5
Nn3g20245 Nelumbo nucifera HOM05D002690 ORTHO05D005709 2.3e-61 240.0 490 38.4
Nitab4.5_0001181g0060 Nicotiana tabacum HOM05D002690 ORTHO05D005709 3.3e-60 236.1 483 36.6
CiPaw.10G086100 Carya illinoinensis HOM05D002690 ORTHO05D005709 4.3e-60 235.7 476 38.2
Thecc.02G012500 Theobroma cacao HOM05D002690 ORTHO05D005709 5.6e-60 235.3 432 40.5
TPR.G30088 Trifolium pratense HOM05D002690 ORTHO05D005709 7.3e-60 235.0 485 36.3
CANSAT35G0839 Cannabis sativa HOM05D002690 ORTHO05D005709 1.6e-59 233.8 436 38.5
Sed0027591 Sechium edule HOM05D002690 ORTHO05D005709 2.8e-59 233.0 476 37.8
Lj6g0003051 Lotus japonicus HOM05D002690 ORTHO05D005709 3.6e-59 232.6 442 38.2
TWI09G1166 Tripterygium wilfordii HOM05D002690 ORTHO05D005709 1.4e-58 230.7 443 38.8
GSVIVG01021617001 Vitis vinifera HOM05D002690 ORTHO05D005709 1.4e-58 230.7 418 40.0
HanXRQChr15g0480931 Helianthus annuus HOM05D002690 ORTHO05D005709 1.8e-58 230.3 440 38.6
Haze_05773 Corylus avellana HOM05D002690 ORTHO05D005709 2.3e-58 229.9 534 35.2
TAR626G1080 Trochodendron aralioides HOM05D002690 ORTHO05D005709 3.0e-58 229.6 440 38.4
Atru.chr10.891 Acer truncatum HOM05D002690 ORTHO05D005709 5.2e-58 228.8 481 37.6
Glyma.15G128500 Glycine max HOM05D002690 ORTHO05D005709 5.2e-58 228.8 474 37.3
Hund26562 Selenicereus undatus HOM05D002690 ORTHO05D005709 6.8e-58 228.4 436 37.8
Prupe.4G089500 Prunus persica HOM05D002690 ORTHO05D005709 8.9e-58 228.0 437 38.9
Duzib132G0834 Durio zibethinus HOM05D002690 ORTHO05D005709 1.2e-57 227.6 516 36.8
PGR031G1950 Punica granatum HOM05D002690 ORTHO05D005709 1.2e-57 227.6 440 38.9
Gorai.008G046800 Gossypium raimondii HOM05D002690 ORTHO05D005709 1.5e-57 227.3 485 38.1
Ciclev10014454m.g Citrus clementina HOM05D002690 ORTHO05D005709 2.0e-57 226.9 435 39.3
MD05G1274200 Malus domestica HOM05D002690 ORTHO05D005709 2.0e-57 226.9 457 36.5
Manes.14G122500 Manihot esculenta HOM05D002690 ORTHO05D005709 2.0e-57 226.9 501 37.7
DCAR_003862 Daucus carota HOM05D002690 ORTHO05D005709 3.4e-57 226.1 432 38.2
Eucgr.E02496 Eucalyptus grandis HOM05D002690 ORTHO05D005709 4.4e-57 225.7 452 36.9
THA.LOC104798605 Tarenaya hassleriana HOM05D002690 ORTHO05D005709 5.7e-57 225.3 421 39.2
Gohir.D12G044500 Gossypium hirsutum HOM05D002690 ORTHO05D005709 1.3e-56 224.2 482 38.0
MBI18_g10583_MAGBIO Magnolia biondii HOM05D002690 ORTHO05D005709 1.3e-56 224.2 490 37.1
MSTRG.16286 Avicennia marina HOM05D002690 ORTHO05D005709 1.7e-56 223.8 435 38.6
QL05p053241 Quercus lobata HOM05D002690 ORTHO05D005709 3.7e-56 222.6 506 34.4
Aa31LG10G6630 Aethionema arabicum HOM05D002690 ORTHO05D005709 6.4e-56 221.9 467 37.0
RcHm_v2.0_Chr5g0015861 Rosa chinensis HOM05D002690 ORTHO05D005709 6.4e-56 221.9 479 36.3
Sp1g26280 Schrenkiella parvula HOM05D002690 ORTHO05D005709 6.4e-56 221.9 419 37.0
Glyma.09G022200 Glycine max HOM05D002690 ORTHO05D005709 1.1e-55 221.1 489 36.4
Oeu060303.1 Olea europaea HOM05D002690 ORTHO05D005709 1.1e-55 221.1 476 38.0
Actinidia31389 Actinidia chinensis HOM05D001466 ORTHO05D005709 1.4e-55 220.7 437 38.2
Migut.H01337 Erythranthe guttata HOM05D002690 ORTHO05D005709 1.4e-55 220.7 471 37.4
Solyc02g070240.3 Solanum lycopersicum HOM05D002690 ORTHO05D005709 1.4e-55 220.7 444 38.1
COL.COLO4_17684 Corchorus olitorius HOM05D002690 ORTHO05D005709 1.8e-55 220.3 314 44.6
ECA236G0560 Erigeron canadensis HOM05D002690 ORTHO05D005709 1.8e-55 220.3 446 37.4
Gohir.A12G045500 Gossypium hirsutum HOM05D002690 ORTHO05D005709 2.4e-55 219.9 481 37.6
Sabra16G0235600 Salix brachista HOM05D002690 ORTHO05D005709 3.2e-55 219.5 164 65.9
VMungo0540G2147 Vigna mungo HOM05D002690 ORTHO05D005709 3.2e-55 219.5 474 35.9
Ah.14g086150 Amaranthus hybridus HOM05D002690 ORTHO05D005709 5.4e-55 218.8 435 36.6
FAN21G3939 Fragaria x ananassa HOM05D002690 ORTHO05D005709 5.4e-55 218.8 417 38.1
MD10G1253900 Malus domestica HOM05D002690 ORTHO05D005709 5.4e-55 218.8 479 37.0
AL1G44410 Arabidopsis lyrata HOM05D002690 ORTHO05D005709 7.0e-55 218.4 449 36.5
Carub.0001s2865 Capsella rubella HOM05D002690 ORTHO05D005709 7.0e-55 218.4 405 38.5
FAN25G1940 Fragaria x ananassa HOM05D002690 ORTHO05D005709 2.0e-54 216.9 252 49.2
SalBow7G2713 Salvia bowleyana HOM05D002690 ORTHO05D005709 2.0e-54 216.9 434 37.3
FvH4_3g09980 Fragaria vesca HOM05D002690 ORTHO05D005709 2.7e-54 216.5 467 36.2
FAN11G1563 Fragaria x ananassa HOM05D002690 ORTHO05D005709 2.7e-54 216.5 247 50.2
Lalb_Chr18g0057871 Lupinus albus HOM05D002690 ORTHO05D005709 3.5e-54 216.1 473 36.6
Lalb_Chr15g0088721 Lupinus albus HOM05D002690 ORTHO05D005709 4.6e-54 215.7 479 35.9
BcaC01g00193 Brassica carinata HOM05D002690 ORTHO05D005709 7.8e-54 214.9 384 39.1
Sopen02g019330 Solanum pennellii HOM05D002690 ORTHO05D005709 7.8e-54 214.9 444 38.1
Sc24g0001450 Simmondsia chinensis HOM05D002690 ORTHO05D005709 1.3e-53 214.2 434 36.2
AT1G30460 Arabidopsis thaliana HOM05D002690 ORTHO05D005709 1.7e-53 213.8 445 36.9
FAN16G3174 Fragaria x ananassa HOM05D002690 ORTHO05D005709 1.7e-53 213.8 247 49.8
CSS0024768 Camellia sinensis var. sinensis HOM05D002690 ORTHO05D005709 2.3e-53 213.4 439 38.0
Phvul.006G130200 Phaseolus vulgaris HOM05D002690 ORTHO05D005709 3.0e-53 213.0 485 35.5
Cpa.g.sc17.104 Carica papaya HOM05D002690 ORTHO05D005709 3.9e-53 212.6 207 54.6
Thhalv10007064m.g Eutrema salsugineum HOM05D002690 ORTHO05D005709 5.0e-53 212.2 466 35.8
Psat1g168520 Pisum sativum HOM05D002690 ORTHO05D005709 6.6e-53 211.8 485 35.9
vmacro03397 Vaccinium macrocarpon HOM05D002690 ORTHO05D005709 1.5e-52 210.7 194 57.2
AUR62042032 Chenopodium quinoa HOM05D002690 ORTHO05D005709 2.5e-52 209.9 191 57.1
CsaV3_1G037380 Cucumis sativus L. HOM05D002690 ORTHO05D005709 3.3e-52 209.5 420 37.4
Rhsim13G0120100 Rhododendron simsii HOM05D002690 ORTHO05D005709 3.3e-52 209.5 193 58.0
SGA_v2.0_scaffold51G18649 Striga asiatica HOM05D002690 ORTHO05D005709 3.3e-52 209.5 189 57.7
CARHR029850 Cardamine hirsuta HOM05D002690 ORTHO05D005709 7.3e-52 208.4 424 35.8
Oeu058474.2 Olea europaea HOM05D002690 ORTHO05D005709 7.3e-52 208.4 134 73.9
ATR0165G057 Amborella trichopoda HOM05D002690 ORTHO05D005709 9.5e-52 208.0 123 78.0
Lsat_1_v5_gn_7_29481 Lactuca sativa HOM05D002690 ORTHO05D005709 2.1e-51 206.8 450 36.2
PGSC0003DMG400021104 Solanum tuberosum HOM05D002690 ORTHO05D005709 2.8e-51 206.5 97 91.8
BcaNung05261 Brassica carinata HOM05D002690 ORTHO05D005709 3.6e-51 206.1 454 34.4
BolC3t19931H Brassica oleracea HOM05D002690 ORTHO05D005709 6.2e-51 205.3 185 55.7
PSO675G8993 Papaver somniferum HOM05D002690 ORTHO05D005709 6.2e-51 205.3 432 37.0
PSO541G0016 Papaver somniferum HOM05D002690 ORTHO05D005709 1.4e-50 204.1 432 36.8
Aqoxy1G01608 Aquilegia oxysepala HOM05D002690 ORTHO05D005709 1.8e-50 203.8 477 35.0
CDE04G1060 Ceratophyllum demersum HOM05D002690 ORTHO05D005709 1.8e-50 203.8 138 68.8
DCAR_007847 Daucus carota HOM05D002690 ORTHO05D005709 1.8e-50 203.8 148 64.2
TAR627G0656 Trochodendron aralioides HOM05D002690 ORTHO05D005709 1.8e-50 203.8 93 93.5
A08p24440 Brassica napus HOM05D002690 ORTHO05D005709 3.1e-50 203.0 455 34.1
C07p15130 Brassica napus HOM05D002690 ORTHO05D005709 3.1e-50 203.0 401 36.2
BraA08t34399Z Brassica rapa HOM05D002690 ORTHO05D005709 3.1e-50 203.0 455 34.1
C03p76770 Brassica napus HOM05D002690 ORTHO05D005709 6.8e-50 201.8 434 34.6
Nitab4.5_0000607g0100 Nicotiana tabacum HOM05D002690 ORTHO05D005709 6.8e-50 201.8 452 35.0
HPP92_016574 Vanilla planifolia HOM05D002690 ORTHO05D005709 8.9e-50 201.4 128 71.9
CDE12G0823 Ceratophyllum demersum HOM05D002690 ORTHO05D005709 2.0e-49 200.3 138 68.1
Nitab4.5_0000100g0020 Nicotiana tabacum HOM05D002690 ORTHO05D005709 2.0e-49 200.3 453 35.3
unitig_61.g26082 Utricularia gibba HOM05D002690 ORTHO05D005709 4.4e-49 199.1 429 37.1
Lj2C328G3 Lonicera japonica HOM05D002690 ORTHO05D005709 1.3e-48 197.6 198 52.5
Solyc02g021760.3 Solanum lycopersicum HOM05D002690 ORTHO05D005709 1.7e-48 197.2 485 35.3
Sopen02g006300 Solanum pennellii HOM05D002690 ORTHO05D005709 2.2e-48 196.8 485 35.3
Lsat_1_v5_gn_4_29061 Lactuca sativa HOM05D002690 ORTHO05D005709 4.9e-48 195.7 134 67.9
Migut.M01886 Erythranthe guttata HOM05D002690 ORTHO05D005709 1.1e-47 194.5 271 45.8
Manes.06G055600 Manihot esculenta HOM05D002690 ORTHO05D005709 1.4e-47 194.1 136 68.4
Mapoly0056s0030 Marchantia polymorpha HOM05D002690 ORTHO05D005709 1.9e-47 193.7 104 76.9
AagrBONN_evm.TU.Sc2ySwM_228.4357 Anthoceros agrestis HOM05D002690 ORTHO05D005709 2.0e-46 190.3 119 68.9
SEGI_22079 Sequoiadendron giganteum HOM05D002690 ORTHO05D005709 4.6e-46 189.1 92 84.8
CAN.G660.45 Capsicum annuum HOM05D002690 ORTHO05D005709 1.0e-45 188.0 421 36.3
ECA234G2820 Erigeron canadensis HOM05D002690 ORTHO05D005709 2.3e-45 186.8 126 66.7
A07p09930 Brassica napus HOM05D002690 ORTHO05D005709 1.9e-44 183.7 436 33.3
Pp3c20_9290 Physcomitrium patens HOM05D002690 ORTHO05D005709 7.3e-44 181.8 195 49.2
Actinidia32368 Actinidia chinensis HOM05D002690 ORTHO05D005709 2.8e-43 179.9 420 35.5
AagrBONN_evm.TU.Sc2ySwM_362.1691 Anthoceros agrestis HOM05D002690 ORTHO05D005709 2.8e-43 179.9 206 46.1
Sabra11G0079000 Salix brachista HOM05D002690 ORTHO05D005709 3.6e-43 179.5 99 99.0
HPP92_015677 Vanilla planifolia HOM05D002690 ORTHO05D005709 1.2e-41 174.5 92 76.1
Ca_00801_v3 Cicer arietinum L. HOM05D002690 ORTHO05D005709 1.4e-39 167.5 477 32.5
Peaxi162Scf00155g00068 Petunia axillaris HOM05D002690 ORTHO05D005709 4.7e-35 152.5 455 31.4
Cre24.g755647 Chlamydomonas reinhardtii HOM05D002690 ORTHO05D005709 1.8e-34 150.6 116 57.8
BolC7t42017H Brassica oleracea HOM05D002690 ORTHO05D005709 3.8e-32 142.9 356 34.8
MCO01G443 Micromonas commoda HOM05D002690 ORTHO05D005709 8.4e-32 141.7 83 69.9
Zm00001eb224690 Zea mays HOM05D002690 ORTHO05D005709 1.1e-31 141.4 129 50.4
Os06g0677700 Oryza sativa ssp. japonica HOM05D002690 ORTHO05D005709 2.4e-31 140.2 91 62.6
PRCOL_00005787 Prasinoderma coloniale HOM05D002690 ORTHO05D005709 3.2e-31 139.8 91 60.4
Zm00001eb273850 Zea mays HOM05D002690 ORTHO05D005709 7.1e-31 138.7 144 47.9
RcHm_v2.0_Chr5g0015731 Rosa chinensis HOM05D002690 ORTHO05D005709 1.0e-29 134.8 109 61.5
Aqoxy1G01609 Aquilegia oxysepala HOM05D002690 ORTHO05D005709 1.1e-20 104.8 59 69.5
Cfa000830 Carpinus fangiana HOM05D002690 ORTHO05D005709 3.6e-19 99.8 100 62.0
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 1.4e-15 87.8 68 61.8
SEGI_04190 Sequoiadendron giganteum HOM05D002690 ORTHO05D005709 2.7e-14 83.6 50 66.0
DCAR_007846 Daucus carota HOM05D002690 ORTHO05D005709 3.0e-13 80.1 95 58.9
Cpa.g.c34894 Carica papaya HOM05D002690 ORTHO05D005709 5.1e-13 79.3 98 58.2
PRCOL_00006800 Prasinoderma coloniale HOM05D002690 ORTHO05D005709 7.4e-12 75.5 102 39.2
unitig_0.g927 Utricularia gibba HOM05D002690 ORTHO05D005709 1.3e-11 74.7 356 27.2
BraA07t28782Z Brassica rapa HOM05D002690 ORTHO05D005709 3.7e-11 73.2 99 51.5
SHI20685 Sapria himalayana HOM05D000105 ORTHO05D000023 3.1e-10 70.1 101 51.5
AUR62042460 Chenopodium quinoa HOM05D002690 ORTHO05D005709 4.9e-08 62.8 168 32.7
BraA08t34401Z Brassica rapa HOM05D002690 ORTHO05D005709 8.4e-08 62.0 37 83.8


User provided reference genes

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