Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 9.8e-225 783.1 385 100.0
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 7.3e-196 687.2 388 89.4
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 7.1e-167 590.9 388 76.8
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 2.3e-165 585.9 388 75.8
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 2.8e-163 578.9 385 74.3
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 2.6e-161 572.4 385 74.0
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.4e-159 566.6 385 72.7
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 5.5e-159 564.7 385 72.5
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 5.5e-159 564.7 386 72.0
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 9.3e-159 563.9 388 72.4
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 3.6e-158 562.0 385 73.2
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 7.9e-158 560.8 386 73.8
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 1.8e-157 559.7 385 72.2
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 3.0e-157 558.9 385 71.9
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 3.0e-157 558.9 385 72.5
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 6.7e-157 557.8 390 72.8
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 1.1e-156 557.0 385 72.5
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 1.5e-156 556.6 385 71.9
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.5e-156 556.6 385 71.9
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.5e-156 556.6 385 71.9
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 1.5e-156 556.6 401 69.6
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 1.9e-156 556.2 385 71.9
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 2.5e-156 555.8 385 71.2
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 7.4e-156 554.3 378 72.0
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 9.7e-156 553.9 385 70.9
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 2.2e-155 552.7 384 71.9
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 9.1e-154 547.4 388 70.6
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 2.0e-153 546.2 391 70.6
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 2.0e-153 546.2 386 70.2
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 2.6e-153 545.8 385 69.4
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 3.4e-153 545.4 385 70.6
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 4.5e-153 545.0 389 70.2
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 2.5e-151 539.3 385 68.8
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 1.2e-150 537.0 385 67.5
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 2.7e-150 535.8 385 68.6
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.6e-150 535.4 386 69.2
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 7.9e-150 534.3 385 69.4
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 1.4e-149 533.5 385 67.5
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 2.3e-149 532.7 385 67.8
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 1.1e-148 530.4 385 67.3
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 4.4e-148 528.5 388 68.8
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 4.4e-148 528.5 387 68.2
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 3.7e-147 525.4 386 68.1
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 8.2e-147 524.2 387 68.7
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 1.8e-146 523.1 387 67.7
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 5.3e-146 521.5 385 68.3
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 4.5e-145 518.5 385 67.5
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 7.7e-145 517.7 388 68.8
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 1.3e-144 516.9 386 67.4
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 5.0e-144 515.0 386 67.6
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 6.5e-144 514.6 388 67.3
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.4e-143 513.5 385 67.5
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 4.2e-143 511.9 388 67.0
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 1.6e-142 510.0 385 66.8
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 2.7e-142 509.2 388 66.5
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 2.7e-142 509.2 385 66.8
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 4.7e-142 508.4 390 65.6
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 6.1e-142 508.1 385 67.8
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 2.3e-141 506.1 382 65.4
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 3.0e-141 505.8 387 67.2
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 6.7e-141 504.6 328 75.0
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 2.0e-140 503.1 382 65.2
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 3.7e-139 498.8 384 66.1
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.8e-138 496.5 358 68.4
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 7.0e-138 494.6 387 63.8
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 1.2e-137 493.8 386 66.6
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 1.2e-137 493.8 385 64.7
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 1.6e-137 493.4 386 65.3
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 3.5e-137 492.3 385 66.5
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 1.7e-136 490.0 385 63.9
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.1e-135 487.3 388 64.2
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.5e-135 486.9 412 60.9
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 5.5e-135 485.0 385 66.0
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 7.2e-135 484.6 376 65.4
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 3.6e-134 482.3 377 64.7
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 4.7e-134 481.9 386 64.2
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 1.4e-133 480.3 387 64.3
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 1.8e-133 479.9 385 62.9
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 3.0e-133 479.2 385 63.4
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 1.2e-132 477.2 387 64.1
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.2e-132 477.2 387 64.3
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 1.5e-132 476.9 387 63.8
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 2.6e-132 476.1 386 64.8
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 3.3e-132 475.7 385 62.3
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 4.4e-132 475.3 386 63.7
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 2.8e-131 472.6 385 61.8
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 5.3e-130 468.4 412 60.2
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 1.3e-128 463.8 393 61.8
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 1.7e-128 463.4 385 64.2
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.1e-127 460.7 379 62.3
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 1.6e-126 456.8 341 68.3
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 3.6e-126 455.7 357 66.7
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 9.1e-122 441.0 386 58.0
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 2.2e-115 419.9 400 55.5
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 8.3e-115 417.9 378 58.5
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 3.1e-114 416.0 383 57.4
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 7.0e-114 414.8 298 69.1
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 9.2e-114 414.5 390 55.9
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.2e-113 414.1 362 58.8
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 3.5e-113 412.5 323 65.3
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 1.5e-111 407.1 393 53.4
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 1.9e-111 406.8 384 56.0
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 8.0e-110 401.4 385 57.4
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 1.0e-109 401.0 382 56.3
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.8e-109 400.2 399 55.9
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 7.8e-105 384.8 266 72.9
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 1.1e-95 354.4 332 53.9
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 5.4e-90 335.5 350 49.1
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 3.0e-88 329.7 298 57.4
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 1.5e-87 327.4 371 46.6
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 7.3e-79 298.5 410 42.4
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 2.1e-78 297.0 385 47.3
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 7.6e-76 288.5 236 61.4
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 1.7e-72 277.3 329 48.3
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 2.8e-70 270.0 167 77.8
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 1.5e-68 264.2 173 72.8
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 3.2e-66 256.5 217 61.8
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 1.0e-64 251.5 222 59.9
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 2.1e-62 243.8 170 72.9
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 1.7e-59 234.2 234 53.8
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 6.9e-53 212.2 182 61.5
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 6.5e-51 205.7 122 81.1
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.6e-49 201.1 122 79.5
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.5e-47 193.7 138 70.3
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 4.1e-45 186.4 330 37.6
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 6.9e-45 185.7 165 59.4
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 1.7e-43 181.0 221 46.2
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 3.6e-41 173.3 137 66.4
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.5e-39 167.9 122 69.7
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 5.7e-39 166.0 276 37.0
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 8.2e-38 162.2 150 58.0
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 2.6e-36 157.1 182 45.6
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 1.8e-32 144.4 137 59.1
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.5e-26 124.0 72 77.8
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 2.5e-26 124.0 135 51.1
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 4.2e-26 123.2 88 68.2
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 3.1e-21 107.1 79 67.1
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 2.6e-20 104.0 383 22.2
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 5.9e-20 102.8 77 62.3
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-17 95.1 133 37.6
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 2.2e-14 84.3 400 23.2
Cfa025488 Carpinus fangiana HOM05D005334 ORTHO05D126475 5.2e-08 63.2 317 25.6


User provided reference genes

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