Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 1.6e-57 225.7 105 100.0
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 3.1e-48 194.9 115 82.6
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 1.1e-45 186.4 115 79.1
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 4.2e-45 184.5 115 78.3
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 5.1e-43 177.6 115 73.9
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 8.8e-43 176.8 115 73.9
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 1.1e-42 176.4 115 73.0
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 1.5e-42 176.0 115 73.9
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 3.3e-42 174.9 115 73.0
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 3.3e-42 174.9 115 73.0
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 3.3e-42 174.9 115 73.0
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 3.3e-42 174.9 115 73.0
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 9.7e-42 173.3 115 70.4
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 9.7e-42 173.3 115 72.2
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 9.7e-42 173.3 115 70.4
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 1.3e-41 172.9 115 71.3
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 1.7e-41 172.6 114 71.1
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 2.2e-41 172.2 115 71.3
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 2.2e-41 172.2 115 71.3
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 2.2e-41 172.2 115 71.3
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 2.2e-41 172.2 115 72.2
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 2.2e-41 172.2 115 72.2
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 2.8e-41 171.8 115 72.2
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 2.8e-41 171.8 115 71.3
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 3.7e-41 171.4 115 71.3
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 3.7e-41 171.4 115 72.2
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 3.7e-41 171.4 115 69.6
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 4.8e-41 171.0 115 70.4
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 4.8e-41 171.0 115 72.2
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 6.3e-41 170.6 115 71.3
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 8.2e-41 170.2 115 70.4
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 8.2e-41 170.2 115 70.4
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 1.1e-40 169.9 118 69.5
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 1.4e-40 169.5 115 70.4
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 1.4e-40 169.5 115 70.4
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 1.4e-40 169.5 115 70.4
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 1.4e-40 169.5 115 70.4
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 1.4e-40 169.5 115 70.4
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 1.8e-40 169.1 115 69.6
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 1.8e-40 169.1 115 69.6
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.8e-40 169.1 115 69.6
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 1.8e-40 169.1 115 69.6
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 1.8e-40 169.1 115 69.6
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 1.8e-40 169.1 115 69.6
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 1.8e-40 169.1 115 69.6
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 2.4e-40 168.7 115 68.7
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 2.4e-40 168.7 115 69.6
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 2.4e-40 168.7 115 69.6
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 3.1e-40 168.3 115 69.6
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 3.1e-40 168.3 115 68.7
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 3.1e-40 168.3 115 69.6
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 4.1e-40 167.9 115 68.7
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 4.1e-40 167.9 115 70.4
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 5.3e-40 167.5 115 68.7
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 5.3e-40 167.5 115 68.7
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 5.3e-40 167.5 115 67.8
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 5.3e-40 167.5 115 68.7
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 5.3e-40 167.5 114 70.2
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 6.9e-40 167.2 115 68.7
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 6.9e-40 167.2 115 68.7
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 6.9e-40 167.2 115 68.7
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 6.9e-40 167.2 115 69.6
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 6.9e-40 167.2 115 72.2
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 9.1e-40 166.8 115 69.6
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 1.2e-39 166.4 115 68.7
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 1.2e-39 166.4 115 69.6
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 1.5e-39 166.0 115 68.7
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 2.0e-39 165.6 115 67.0
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 2.6e-39 165.2 115 67.8
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 2.6e-39 165.2 115 68.7
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 2.6e-39 165.2 115 67.8
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 2.6e-39 165.2 115 67.8
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 2.6e-39 165.2 115 67.8
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 2.6e-39 165.2 115 69.6
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 3.4e-39 164.9 115 67.8
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 3.4e-39 164.9 115 67.8
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 3.4e-39 164.9 115 67.8
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 3.4e-39 164.9 115 67.8
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 3.4e-39 164.9 115 67.8
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 5.9e-39 164.1 134 61.9
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 7.7e-39 163.7 115 67.0
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 7.7e-39 163.7 115 67.0
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 7.7e-39 163.7 115 67.0
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 7.7e-39 163.7 115 67.0
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 1.0e-38 163.3 135 60.0
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 1.7e-38 162.5 116 68.1
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.7e-38 162.5 115 67.8
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 2.2e-38 162.2 115 69.6
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 2.9e-38 161.8 115 66.1
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 3.8e-38 161.4 115 66.1
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 3.8e-38 161.4 115 66.1
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 3.8e-38 161.4 115 66.1
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 5.0e-38 161.0 115 67.0
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 5.0e-38 161.0 115 66.1
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 1.1e-37 159.8 115 66.1
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 1.6e-36 156.0 128 60.2
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 3.6e-36 154.8 113 64.6
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 3.6e-36 154.8 113 64.6
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.3e-35 152.1 115 63.5
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 6.7e-35 150.6 112 67.0
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 6.7e-35 150.6 112 67.0
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 6.7e-35 150.6 114 60.5
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 4.4e-34 147.9 105 67.6
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 4.4e-34 147.9 105 68.6
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 1.3e-33 146.4 114 60.5
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 2.2e-33 145.6 180 46.7
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 2.8e-33 145.2 105 66.7
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 3.7e-33 144.8 115 58.3
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 4.8e-33 144.4 112 60.7
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 6.3e-33 144.1 112 60.7
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 6.3e-33 144.1 112 60.7
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 6.3e-33 144.1 112 60.7
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 1.8e-32 142.5 105 64.8
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 3.1e-32 141.7 115 60.0
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 4.1e-32 141.4 105 63.8
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 4.1e-32 141.4 105 66.7
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 5.3e-32 141.0 115 56.5
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 2.0e-31 139.0 97 69.1
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 2.0e-31 139.0 115 57.4
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 2.0e-31 139.0 105 62.9
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 4.5e-31 137.9 101 66.3
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 1.0e-30 136.7 73 83.6
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 1.0e-30 136.7 115 54.8
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 2.2e-30 135.6 88 75.0
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 3.8e-30 134.8 73 82.2
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 8.5e-30 133.7 73 80.8
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 2.5e-29 132.1 73 79.5
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 2.5e-29 132.1 73 79.5
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.5e-29 132.1 114 54.4
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 3.2e-29 131.7 73 80.8
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 1.2e-28 129.8 73 78.1
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 4.7e-28 127.9 115 54.8
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 6.1e-28 127.5 73 76.7
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 1.4e-27 126.3 73 75.3
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 1.8e-27 125.9 73 78.1
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.8e-27 125.9 115 48.7
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 2.3e-27 125.6 73 75.3
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 5.2e-27 124.4 114 51.8
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 6.7e-27 124.0 98 63.3
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 1.5e-26 122.9 73 72.6
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 8.2e-25 117.1 88 67.0
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 2.4e-24 115.5 88 65.9
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 5.3e-24 114.4 114 51.8
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 5.3e-24 114.4 73 69.9
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 2.7e-23 112.1 88 62.5
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 3.0e-19 98.6 71 66.2
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 2.2e-17 92.4 110 40.9
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 6.3e-17 90.9 57 73.7
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 8.3e-17 90.5 111 42.3
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 3.5e-15 85.1 77 58.4
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 1.1e-13 80.1 48 75.0
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 3.6e-12 75.1 113 38.1
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 4.7e-12 74.7 113 39.8
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 1.2e-10 70.1 114 35.1
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 1.2e-10 70.1 95 37.9
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 2.6e-10 68.9 46 71.7
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 2.6e-10 68.9 97 38.1
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 1.8e-08 62.8 39 69.2
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 7.0e-08 60.8 112 32.1
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 2.0e-07 59.3 111 30.6
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 2.7e-07 58.9 61 47.5
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 5.9e-07 57.8 37 70.3
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 5.9e-07 57.8 111 31.5
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.0e-06 57.0 99 32.3


User provided reference genes

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