Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 5.4e-133 477.6 236 100.0
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 3.9e-123 444.9 236 94.5
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 3.1e-96 355.5 236 76.7
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 8.7e-91 337.4 234 72.2
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 9.3e-85 317.4 234 68.8
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 9.3e-85 317.4 233 71.2
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 1.6e-84 316.6 236 70.3
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 1.6e-84 316.6 234 69.7
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.7e-84 315.8 234 69.2
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.7e-84 315.8 223 71.7
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 6.1e-84 314.7 225 71.6
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 7.9e-84 314.3 238 69.7
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 6.7e-83 311.2 234 70.1
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 1.5e-82 310.1 238 68.5
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.9e-82 309.7 234 67.9
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 3.3e-82 308.9 228 71.9
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 9.7e-82 307.4 236 69.5
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.3e-81 307.0 234 67.5
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 2.4e-80 302.8 236 67.8
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 3.1e-80 302.4 236 66.5
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 4.1e-80 302.0 237 66.7
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 4.1e-80 302.0 237 66.7
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 5.3e-80 301.6 236 67.8
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 4.5e-79 298.5 237 69.2
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 7.7e-79 297.7 226 71.7
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 1.7e-78 296.6 234 68.4
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 3.8e-78 295.4 235 67.7
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 1.1e-77 293.9 236 66.1
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 1.4e-77 293.5 236 67.4
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 1.9e-77 293.1 235 66.0
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 5.5e-77 291.6 236 66.5
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 5.5e-77 291.6 235 66.0
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 7.2e-77 291.2 235 63.8
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 2.1e-76 289.7 236 65.7
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 2.7e-76 289.3 234 66.7
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 3.6e-76 288.9 236 65.3
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 6.1e-76 288.1 236 65.7
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.0e-75 287.3 236 65.7
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 2.3e-75 286.2 236 64.8
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 3.9e-75 285.4 234 66.7
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 8.8e-75 284.3 233 65.7
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 1.1e-74 283.9 237 65.4
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 2.0e-74 283.1 234 62.8
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 7.4e-74 281.2 236 64.0
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 1.3e-73 280.4 237 60.8
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 2.2e-73 279.6 237 60.8
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 6.3e-73 278.1 235 63.8
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 8.2e-73 277.7 236 63.6
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.1e-72 275.8 242 60.7
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 6.9e-72 274.6 234 64.1
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 1.2e-71 273.9 234 63.7
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 2.0e-71 273.1 235 63.0
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 2.0e-71 273.1 237 59.5
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 7.7e-71 271.2 236 60.2
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 7.7e-71 271.2 236 60.6
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 7.7e-71 271.2 238 63.4
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 7.7e-71 271.2 235 60.9
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 3.8e-70 268.9 239 60.3
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 5.0e-70 268.5 209 67.9
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 6.5e-70 268.1 232 61.2
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 8.5e-70 267.7 239 61.5
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 1.4e-69 266.9 232 60.8
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 3.2e-69 265.8 278 54.0
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 4.2e-69 265.4 236 62.3
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 5.5e-69 265.0 224 62.9
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 9.4e-69 264.2 210 65.2
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 1.2e-68 263.8 235 60.4
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 1.2e-68 263.8 229 62.0
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 1.6e-68 263.5 236 60.6
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 1.6e-68 263.5 229 60.7
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 2.1e-68 263.1 212 63.7
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 6.1e-68 261.5 232 59.9
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 6.1e-68 261.5 239 59.8
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 1.8e-67 260.0 232 59.5
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 3.9e-67 258.8 229 61.1
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 8.8e-67 257.7 232 59.1
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 3.3e-66 255.8 212 64.2
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 4.4e-66 255.4 243 57.2
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 7.4e-66 254.6 270 53.3
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 1.7e-65 253.4 224 58.5
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 1.7e-65 253.4 209 64.1
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 6.3e-65 251.5 230 59.1
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 5.9e-63 245.0 203 62.1
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 6.5e-62 241.5 234 57.7
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 6.5e-62 241.5 211 60.7
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 1.1e-61 240.7 228 57.9
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 4.7e-60 235.3 224 57.6
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 4.7e-60 235.3 218 59.2
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 2.0e-58 229.9 234 57.7
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 2.6e-58 229.6 238 56.7
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 4.4e-58 228.8 235 54.5
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 1.7e-57 226.9 210 58.1
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 6.3e-57 224.9 192 58.9
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 8.2e-57 224.6 180 70.0
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 7.0e-56 221.5 234 53.8
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 3.5e-55 219.2 190 60.5
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 6.5e-54 214.9 270 47.8
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.9e-53 213.4 162 64.2
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 7.2e-53 211.5 235 53.6
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 1.6e-52 210.3 199 56.8
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 3.6e-52 209.1 180 64.4
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 3.0e-51 206.1 210 54.8
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 5.2e-51 205.3 209 55.0
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 6.3e-49 198.4 125 76.0
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 7.0e-48 194.9 236 48.7
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 4.5e-47 192.2 178 58.4
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 1.3e-46 190.7 191 55.5
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 3.8e-46 189.1 120 72.5
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.5e-45 186.4 225 49.3
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 5.5e-45 185.3 236 48.7
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 1.4e-43 180.6 170 55.9
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 1.8e-43 180.3 266 44.7
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 2.6e-42 176.4 254 44.5
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 7.5e-42 174.9 237 43.9
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 3.7e-41 172.6 198 51.0
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 2.4e-40 169.9 109 72.5
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 4.5e-39 165.6 189 51.9
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 3.3e-29 132.9 96 66.7
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 6.8e-27 125.2 177 45.2
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 4.1e-24 115.9 57 91.2
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 7.0e-24 115.2 70 78.6
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 6.8e-19 98.6 175 37.7
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 5.8e-18 95.5 66 59.1
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 6.4e-17 92.0 70 68.6
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 3.5e-15 86.3 71 56.3
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 1.7e-14 84.0 52 75.0
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 3.0e-14 83.2 53 75.5
Gohir.D07G091700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 3.3e-13 79.7 97 49.5
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 3.3e-13 79.7 58 65.5
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 3.6e-12 76.3 48 72.9
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 6.2e-12 75.5 54 61.1
Gohir.A07G086801 Gossypium hirsutum HOM05D005584 ORTHO05D006809 8.1e-12 75.1 81 53.1
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 8.1e-12 75.1 48 72.9
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.1e-11 74.7 48 72.9
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.3e-11 73.6 48 70.8
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 2.3e-11 73.6 48 68.8
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.2e-09 67.0 43 69.8
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 4.9e-09 65.9 43 69.8
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 2.3e-06 57.0 42 59.5


User provided reference genes

Program Settings