Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2981.0 1524 100.0
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2754.9 1532 93.2
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2471.4 1534 81.9
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2417.5 1534 80.4
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2393.2 1533 80.0
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2392.5 1534 79.5
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2390.5 1533 79.5
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2380.1 1535 79.9
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2372.0 1534 79.3
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2369.3 1533 78.9
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2354.7 1537 78.3
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2350.9 1536 78.5
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2347.8 1534 78.2
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2347.4 1535 78.0
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2341.6 1530 78.8
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2330.1 1530 78.0
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2320.4 1535 77.7
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2309.3 1534 77.0
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2276.1 1518 77.1
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2275.4 1526 76.8
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2271.1 1532 75.5
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2270.7 1533 75.1
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2266.9 1533 75.0
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2265.3 1533 75.5
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2263.4 1532 75.2
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2262.3 1536 75.9
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2261.9 1533 75.3
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2258.8 1533 74.8
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2258.4 1592 74.0
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2258.0 1533 75.5
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2256.5 1523 75.5
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2256.5 1532 75.4
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2253.0 1535 75.7
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2251.5 1529 74.4
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2249.6 1533 74.4
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2248.0 1571 73.3
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2241.5 1532 74.5
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2239.9 1524 74.6
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2239.2 1532 74.8
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2236.1 1533 74.2
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2233.4 1532 74.8
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2231.4 1532 74.7
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2221.0 1535 74.1
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2205.3 1532 73.4
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2203.7 1533 73.2
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2199.5 1533 73.6
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2198.7 1532 73.7
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2196.0 1479 76.9
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2196.0 1607 71.6
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2194.1 1522 73.3
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 2193.7 1531 74.5
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2191.4 1534 73.5
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2175.6 1532 72.7
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2173.3 1519 73.1
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 2172.5 1527 72.6
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2169.8 1531 72.6
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2165.2 1532 72.7
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2157.5 1522 72.7
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2140.2 1524 71.9
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2134.4 1524 72.1
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2132.5 1533 71.4
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 2127.1 1586 70.1
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 2126.3 1534 71.2
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 2120.5 1535 71.0
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 2100.5 1532 71.2
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 2083.5 1528 70.0
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2073.9 1526 71.0
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2073.5 1534 70.1
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2072.7 1528 70.5
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 2071.2 1524 70.2
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2068.5 1527 71.1
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2067.7 1526 70.6
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2066.6 1494 71.6
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2065.0 1527 70.2
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2064.7 1340 79.3
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2060.8 1527 70.1
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2060.0 1526 70.4
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2057.0 1526 70.5
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2056.2 1526 70.4
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2053.9 1521 70.2
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2052.7 1530 70.2
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2050.0 1527 69.8
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2048.5 1522 70.0
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2048.1 1523 70.4
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2043.5 1522 69.8
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2040.0 1342 78.5
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2038.5 1523 70.1
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2033.8 1530 68.6
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2028.8 1532 68.3
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2021.5 1585 67.4
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 2021.1 1341 78.2
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2017.7 1528 69.2
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 2015.4 1605 68.1
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 2010.0 1509 69.0
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 1995.7 1474 70.3
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1991.9 1535 68.1
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1988.8 1291 78.4
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1915.2 1401 72.0
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1895.2 1336 72.9
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1880.9 1517 64.9
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1847.0 1236 76.7
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1840.5 1527 63.0
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1833.5 1393 69.2
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1791.9 1476 64.7
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1753.8 1720 56.7
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1736.1 1494 60.6
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1615.5 1002 80.9
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1592.4 1556 55.4
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1582.4 1568 55.5
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1468.8 1433 57.9
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1422.5 1107 67.8
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1380.2 1423 55.2
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1375.9 1234 58.6
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1331.6 1319 55.5
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1331.2 1413 53.7
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 0.0e+00 1146.3 762 79.9
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1095.5 1145 55.4
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 2.6e-305 1052.7 766 70.2
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.2e-304 1049.7 857 62.7
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 2.1e-262 910.2 790 62.4
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 1.8e-250 870.5 734 63.1
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 7.0e-250 868.6 926 54.5
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.2e-234 816.6 593 68.3
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 4.3e-207 726.5 627 61.6
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 4.5e-204 716.5 601 64.4
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 3.2e-186 657.1 911 43.9
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 5.0e-179 633.3 382 80.6
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 2.4e-173 614.4 463 73.2
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 1.1e-170 605.5 757 46.5
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 9.4e-170 602.4 472 70.1
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.3e-150 538.9 486 59.5
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 3.7e-142 510.8 574 52.4
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 4.7e-129 467.2 768 40.6
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 1.3e-97 362.8 1495 27.2
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 9.0e-96 356.7 241 76.8
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 5.8e-95 354.0 458 46.3
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 1.6e-92 345.9 1744 26.1
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 5.3e-88 330.9 393 50.6
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 4.6e-84 317.8 1592 25.3
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 9.0e-80 303.5 242 65.7
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 4.9e-78 297.7 247 62.3
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.5e-74 286.2 243 64.2
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.6e-73 282.7 271 59.4
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 2.5e-66 258.8 218 61.5
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 3.3e-66 258.5 158 76.6
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 4.1e-64 251.5 155 76.8
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 1.3e-46 193.4 199 53.3
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 1.9e-45 189.5 190 55.8
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 1.4e-43 183.3 102 85.3
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 2.9e-38 165.6 130 63.1
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 3.2e-37 162.2 241 46.1
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 4.0e-35 155.2 129 62.8
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 1.2e-34 153.7 143 57.3
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.7e-31 142.5 343 32.7
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 1.4e-27 130.2 101 69.3
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 2.0e-26 126.3 109 62.4
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 4.1e-24 118.6 99 63.6
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 7.8e-23 114.4 56 87.5
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 8.6e-22 110.9 57 82.5
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 4.3e-21 108.6 70 72.9
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 2.8e-20 105.9 363 27.0
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.7e-17 95.5 140 42.9
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.0e-15 89.7 70 61.4
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 7.8e-15 87.8 53 79.2
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 7.8e-15 87.8 53 79.2
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.5e-13 83.6 61 72.1
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 2.9e-09 69.3 54 64.8
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 3.7e-09 68.9 41 78.0
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 1.6e-07 63.5 34 88.2
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 1.7e-06 60.1 161 29.8


User provided reference genes

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