Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0146400 Salix brachista HOM05D004026 ORTHO05D004712 4.9e-58 227.6 118 100.0
Eucgr.F02710 Eucalyptus grandis HOM05D004026 ORTHO05D004712 2.5e-46 188.7 105 93.3
Manes.18G091400 Manihot esculenta HOM05D004026 ORTHO05D004712 3.3e-46 188.3 98 100.0
Potri.005G191600 Populus trichocarpa HOM05D004026 ORTHO05D004712 3.3e-46 188.3 98 100.0
Ciclev10002950m.g Citrus clementina HOM05D004026 ORTHO05D004712 4.3e-46 188.0 98 99.0
Nn1g06097 Nelumbo nucifera HOM05D004026 ORTHO05D004712 4.3e-46 188.0 98 99.0
Cpa.g.sc2145.2 Carica papaya HOM05D004026 ORTHO05D004712 7.3e-46 187.2 98 99.0
Dinv25856 Davidia involucrata HOM05D004026 ORTHO05D004712 7.3e-46 187.2 102 95.1
Dinv41090 Davidia involucrata HOM05D004026 ORTHO05D004712 7.3e-46 187.2 98 99.0
Duzib093G0799 Durio zibethinus HOM05D004026 ORTHO05D004712 7.3e-46 187.2 102 95.1
Duzib116G0179 Durio zibethinus HOM05D004026 ORTHO05D004712 7.3e-46 187.2 98 99.0
Hund26698 Selenicereus undatus HOM05D004026 ORTHO05D004712 7.3e-46 187.2 98 99.0
Thecc.08G150600 Theobroma cacao HOM05D004026 ORTHO05D004712 7.3e-46 187.2 98 99.0
ECA236G1806 Erigeron canadensis HOM05D004026 ORTHO05D004712 9.5e-46 186.8 98 99.0
Gohir.A05G243000 Gossypium hirsutum HOM05D004026 ORTHO05D004712 9.5e-46 186.8 98 98.0
Gohir.D05G244500 Gossypium hirsutum HOM05D004026 ORTHO05D004712 9.5e-46 186.8 98 98.0
Gorai.009G253600 Gossypium raimondii HOM05D004026 ORTHO05D004712 9.5e-46 186.8 98 98.0
HanXRQChr06g0182631 Helianthus annuus HOM05D004026 ORTHO05D004712 9.5e-46 186.8 98 99.0
HanXRQChr11g0339331 Helianthus annuus HOM05D004026 ORTHO05D004712 9.5e-46 186.8 98 99.0
Lsat_1_v5_gn_7_71840 Lactuca sativa HOM05D004026 ORTHO05D004712 9.5e-46 186.8 98 99.0
Nn5g28727 Nelumbo nucifera HOM05D004026 ORTHO05D004712 9.5e-46 186.8 98 98.0
PGR042G0059 Punica granatum HOM05D004026 ORTHO05D004712 9.5e-46 186.8 98 98.0
QL02p024017 Quercus lobata HOM05D004026 ORTHO05D004712 9.5e-46 186.8 97 99.0
TAR381G0202 Trochodendron aralioides HOM05D004026 ORTHO05D004712 9.5e-46 186.8 98 98.0
Potri.002G068800 Populus trichocarpa HOM05D004026 ORTHO05D004712 1.2e-45 186.4 98 99.0
Glyma.16G167900 Glycine max HOM05D004026 ORTHO05D004712 1.6e-45 186.0 98 98.0
Gorai.002G055500 Gossypium raimondii HOM05D004026 ORTHO05D004712 1.6e-45 186.0 98 98.0
Lj2g0026454 Lotus japonicus HOM05D004026 ORTHO05D004712 1.6e-45 186.0 98 98.0
HPP92_016150 Vanilla planifolia HOM05D004026 ORTHO05D004712 1.6e-45 186.0 114 86.8
Atru.chr13.2143 Acer truncatum HOM05D004026 ORTHO05D004712 2.1e-45 185.7 98 96.9
Phvul.004G095700 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 2.1e-45 185.7 98 96.9
TAR625G0830 Trochodendron aralioides HOM05D004026 ORTHO05D004712 2.1e-45 185.7 98 96.9
TAR628G0743 Trochodendron aralioides HOM05D004026 ORTHO05D004712 2.1e-45 185.7 98 96.9
Ah.05g167900 Amaranthus hybridus HOM05D004026 ORTHO05D004712 2.8e-45 185.3 97 99.0
arahy.Tifrunner.gnm1.ann1.9PQ1GY Arachis hypogaea HOM05D004026 ORTHO05D004712 2.8e-45 185.3 97 99.0
arahy.Tifrunner.gnm1.ann1.XJQY2Y Arachis hypogaea HOM05D004026 ORTHO05D004712 2.8e-45 185.3 97 99.0
EL10Ac1g01537 Beta vulgaris HOM05D004026 ORTHO05D004712 2.8e-45 185.3 97 99.0
MBI09_g18621_MAGBIO Magnolia biondii HOM05D004026 ORTHO05D004712 2.8e-45 185.3 97 99.0
Manes.02G178900 Manihot esculenta HOM05D004026 ORTHO05D004712 2.8e-45 185.3 98 98.0
QL09p017237 Quercus lobata HOM05D004026 ORTHO05D004712 2.8e-45 185.3 96 99.0
Sabra02G0054100 Salix brachista HOM05D004026 ORTHO05D004712 2.8e-45 185.3 98 98.0
TWI34G0684 Tripterygium wilfordii HOM05D004026 ORTHO05D004712 2.8e-45 185.3 98 98.0
Hma1.2p1_0105F.1_g050760 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 3.6e-45 184.9 98 98.0
Actinidia06668 Actinidia chinensis HOM05D004026 ORTHO05D004712 4.7e-45 184.5 98 96.9
FvH4_2g13861 Fragaria vesca HOM05D004026 ORTHO05D004712 4.7e-45 184.5 98 96.9
FAN15G1801 Fragaria x ananassa HOM05D004026 ORTHO05D004712 4.7e-45 184.5 98 96.9
FAN20G2578 Fragaria x ananassa HOM05D004026 ORTHO05D004712 4.7e-45 184.5 98 96.9
FAN27G2615 Fragaria x ananassa HOM05D004026 ORTHO05D004712 4.7e-45 184.5 98 96.9
Glyma.02G082300 Glycine max HOM05D004026 ORTHO05D004712 4.7e-45 184.5 98 95.9
Gohir.A02G112705 Gossypium hirsutum HOM05D004026 ORTHO05D004712 4.7e-45 184.5 98 96.9
Nitab4.5_0000964g0020 Nicotiana tabacum HOM05D004026 ORTHO05D004712 4.7e-45 184.5 98 95.9
RcHm_v2.0_Chr6g0275571 Rosa chinensis HOM05D004026 ORTHO05D004712 4.7e-45 184.5 98 96.9
THA.LOC104813712 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 4.7e-45 184.5 98 95.9
FAN24G0951 Fragaria x ananassa HOM05D004026 ORTHO05D004712 6.2e-45 184.1 98 95.9
Migut.N03226 Erythranthe guttata HOM05D004026 ORTHO05D004712 8.1e-45 183.7 98 96.9
SalBow6G5104 Salvia bowleyana HOM05D004026 ORTHO05D004712 8.1e-45 183.7 98 96.9
CANSAT25G0019 Cannabis sativa HOM05D004026 ORTHO05D004712 1.1e-44 183.3 98 95.9
Migut.C01015 Erythranthe guttata HOM05D004026 ORTHO05D004712 1.1e-44 183.3 98 95.9
Lj1g0021939 Lotus japonicus HOM05D004026 ORTHO05D004712 1.1e-44 183.3 95 100.0
MD10G1024500 Malus domestica HOM05D004026 ORTHO05D004712 1.1e-44 183.3 98 96.9
Oeu046026.1 Olea europaea HOM05D004026 ORTHO05D004712 1.1e-44 183.3 98 96.9
THA.LOC104812039 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 1.1e-44 183.3 98 94.9
TPR.G14063 Trifolium pratense HOM05D004026 ORTHO05D004712 1.1e-44 183.3 101 96.0
Gohir.D03G060607 Gossypium hirsutum HOM05D004026 ORTHO05D004712 1.4e-44 183.0 98 96.9
MD05G1024000 Malus domestica HOM05D004026 ORTHO05D004712 1.4e-44 183.0 98 95.9
Prupe.8G028400 Prunus persica HOM05D004026 ORTHO05D004712 1.4e-44 183.0 98 94.9
ClCG08G006960 Citrullus lanatus HOM05D004026 ORTHO05D004712 1.8e-44 182.6 98 95.9
Lalb_Chr01g0009621 Lupinus albus HOM05D004026 ORTHO05D004712 1.8e-44 182.6 96 97.9
Medtr4g083170 Medicago truncatula HOM05D004026 ORTHO05D004712 1.8e-44 182.6 96 97.9
Psat7g153480 Pisum sativum HOM05D004026 ORTHO05D004712 1.8e-44 182.6 96 97.9
Sed0010346 Sechium edule HOM05D004026 ORTHO05D004712 1.8e-44 182.6 98 95.9
unitig_744.g24567 Utricularia gibba HOM05D004026 ORTHO05D004712 1.8e-44 182.6 98 95.9
PSO541G1854 Papaver somniferum HOM05D004026 ORTHO05D004712 2.3e-44 182.2 96 96.9
PSO675G7538 Papaver somniferum HOM05D004026 ORTHO05D004712 2.3e-44 182.2 96 96.9
CSS0019157 Camellia sinensis var. sinensis HOM05D004026 ORTHO05D004712 3.1e-44 181.8 98 95.9
Peaxi162Scf00025g02218 Petunia axillaris HOM05D004026 ORTHO05D004712 3.1e-44 181.8 99 97.0
Phvul.004G129000 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 3.1e-44 181.8 98 94.9
Sed0019016 Sechium edule HOM05D004026 ORTHO05D004712 3.1e-44 181.8 98 94.9
CAN.G249.12 Capsicum annuum HOM05D004026 ORTHO05D004712 4.0e-44 181.4 98 94.9
Solyc11g005370.2 Solanum lycopersicum HOM05D004026 ORTHO05D004712 4.0e-44 181.4 98 94.9
Sopen11g001380 Solanum pennellii HOM05D004026 ORTHO05D004712 4.0e-44 181.4 98 94.9
PGSC0003DMG400003988 Solanum tuberosum HOM05D004026 ORTHO05D004712 4.0e-44 181.4 98 94.9
Lalb_Chr03g0035271 Lupinus albus HOM05D004026 ORTHO05D004712 5.2e-44 181.0 96 96.9
TPR.G8174 Trifolium pratense HOM05D004026 ORTHO05D004712 5.2e-44 181.0 96 96.9
unitig_21.g20177 Utricularia gibba HOM05D004026 ORTHO05D004712 5.2e-44 181.0 98 94.9
Zm00001eb146730 Zea mays HOM05D004026 ORTHO05D004712 5.2e-44 181.0 97 94.8
Peaxi162Scf00583g00530 Petunia axillaris HOM05D004026 ORTHO05D004712 6.8e-44 180.6 99 96.0
CDE06G1840 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 8.9e-44 180.3 98 92.9
CDE08G0955 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 8.9e-44 180.3 98 92.9
MELO3C008344.2 Cucumis melo HOM05D004026 ORTHO05D004712 8.9e-44 180.3 98 94.9
Rhsim06G0071000 Rhododendron simsii HOM05D004026 ORTHO05D004712 8.9e-44 180.3 98 93.9
Rhsim06G0135800 Rhododendron simsii HOM05D004026 ORTHO05D004712 8.9e-44 180.3 98 93.9
Aqoxy5G02098 Aquilegia oxysepala HOM05D004026 ORTHO05D004712 2.6e-43 178.7 98 93.9
Cc10_g14760 Coffea canephora HOM05D004026 ORTHO05D004712 2.6e-43 178.7 97 93.8
Hma1.2p1_0006F.1_g004910 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 3.4e-43 178.3 98 92.9
SEGI_01220 Sequoiadendron giganteum HOM05D004026 ORTHO05D004712 3.4e-43 178.3 98 91.8
Dinv09936 Davidia involucrata HOM05D004026 ORTHO05D004712 4.4e-43 177.9 98 92.9
Aa31LG4G6900 Aethionema arabicum HOM05D004026 ORTHO05D004712 5.8e-43 177.6 98 89.8
Pp3c24_12260 Physcomitrium patens HOM05D004026 ORTHO05D004712 7.5e-43 177.2 98 90.8
Haze_17748 Corylus avellana HOM05D004026 ORTHO05D004712 1.3e-42 176.4 115 84.3
Os01g0866700 Oryza sativa ssp. japonica HOM05D004026 ORTHO05D004712 1.3e-42 176.4 93 96.8
DCAR_014432 Daucus carota HOM05D004026 ORTHO05D004712 1.7e-42 176.0 93 97.8
Mapoly0008s0084 Marchantia polymorpha HOM05D004026 ORTHO05D004712 2.2e-42 175.6 98 89.8
AagrBONN_evm.TU.Sc2ySwM_117.2023 Anthoceros agrestis HOM05D004026 ORTHO05D004712 3.7e-42 174.9 97 90.7
SMO169G0100 Selaginella moellendorffii HOM05D004026 ORTHO05D004712 8.3e-42 173.7 98 88.8
Aa31LG7G5300 Aethionema arabicum HOM05D004026 ORTHO05D004712 1.1e-41 173.3 98 86.7
AT1G76860 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 1.4e-41 172.9 97 88.7
Sp1g18830 Schrenkiella parvula HOM05D004026 ORTHO05D004712 1.9e-41 172.6 98 86.7
AL1G34240 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 2.4e-41 172.2 96 87.5
AT1G21190 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 2.4e-41 172.2 98 85.7
AL2G36980 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 3.2e-41 171.8 97 87.6
CARHR070370 Cardamine hirsuta HOM05D004026 ORTHO05D004712 3.2e-41 171.8 96 87.5
ATR0772G183 Amborella trichopoda HOM05D004026 ORTHO05D004712 4.1e-41 171.4 95 90.5
Carub.0001s2062 Capsella rubella HOM05D004026 ORTHO05D004712 5.4e-41 171.0 98 84.7
BcaB02g07078 Brassica carinata HOM05D004026 ORTHO05D004712 9.2e-41 170.2 98 85.7
BcaC08g45508 Brassica carinata HOM05D004026 ORTHO05D004712 9.2e-41 170.2 98 85.7
A07p28330 Brassica napus HOM05D004026 ORTHO05D004712 9.2e-41 170.2 98 85.7
C06p31770 Brassica napus HOM05D004026 ORTHO05D004712 9.2e-41 170.2 98 85.7
BolC6t38306H Brassica oleracea HOM05D004026 ORTHO05D004712 9.2e-41 170.2 98 85.7
BraA07t30470Z Brassica rapa HOM05D004026 ORTHO05D004712 9.2e-41 170.2 98 85.7
CARHR021640 Cardamine hirsuta HOM05D004026 ORTHO05D004712 1.2e-40 169.9 96 86.5
Thhalv10019321m.g Eutrema salsugineum HOM05D004026 ORTHO05D004712 1.6e-40 169.5 95 87.4
BcaB07g32108 Brassica carinata HOM05D004026 ORTHO05D004712 2.7e-40 168.7 98 84.7
A06p17220 Brassica napus HOM05D004026 ORTHO05D004712 2.7e-40 168.7 98 84.7
BraA06t24824Z Brassica rapa HOM05D004026 ORTHO05D004712 2.7e-40 168.7 98 84.7
Carub.0002s2374 Capsella rubella HOM05D004026 ORTHO05D004712 3.5e-40 168.3 98 84.7
BcaC03g15707 Brassica carinata HOM05D004026 ORTHO05D004712 4.6e-40 167.9 95 86.3
A02p20950 Brassica napus HOM05D004026 ORTHO05D004712 4.6e-40 167.9 95 86.3
C02p34120 Brassica napus HOM05D004026 ORTHO05D004712 4.6e-40 167.9 95 86.3
BolC2t09428H Brassica oleracea HOM05D004026 ORTHO05D004712 4.6e-40 167.9 95 86.3
BraA02t07126Z Brassica rapa HOM05D004026 ORTHO05D004712 4.6e-40 167.9 95 86.3
Sp5g31990 Schrenkiella parvula HOM05D004026 ORTHO05D004712 6.0e-40 167.5 95 86.3
BcaC08g47186 Brassica carinata HOM05D004026 ORTHO05D004712 1.0e-39 166.8 98 83.7
A07p42450 Brassica napus HOM05D004026 ORTHO05D004712 1.0e-39 166.8 98 83.7
C06p51010 Brassica napus HOM05D004026 ORTHO05D004712 1.0e-39 166.8 98 83.7
BolC6t40126H Brassica oleracea HOM05D004026 ORTHO05D004712 1.0e-39 166.8 98 83.7
BraA07t31770Z Brassica rapa HOM05D004026 ORTHO05D004712 1.0e-39 166.8 98 83.7
BcaB05g25014 Brassica carinata HOM05D004026 ORTHO05D004712 2.3e-39 165.6 95 85.3
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 1.2e-37 159.8 96 90.6
MCO12G407 Micromonas commoda HOM05D004026 ORTHO05D004712 2.1e-37 159.1 94 81.9
Cre16.g662300 Chlamydomonas reinhardtii HOM05D004026 ORTHO05D004712 8.1e-37 157.1 97 80.4
BolC5t30689H Brassica oleracea HOM05D004026 ORTHO05D004712 1.2e-35 153.3 109 74.3
Cfa018326 Carpinus fangiana HOM05D004026 ORTHO05D004712 1.5e-35 152.9 135 67.4
BcaC05g26025 Brassica carinata HOM05D004026 ORTHO05D004712 3.8e-34 148.3 109 72.5
CsaV3_1G019700 Cucumis sativus L. HOM05D004026 ORTHO05D004712 1.1e-33 146.7 126 69.0
AUR62026713 Chenopodium quinoa HOM05D004026 ORTHO05D004712 5.4e-33 144.4 97 80.4
PRCOL_00001118 Prasinoderma coloniale HOM05D004026 ORTHO05D004712 2.7e-32 142.1 97 71.1
GSVIVG01034520001 Vitis vinifera HOM05D004026 ORTHO05D004712 1.0e-31 140.2 77 93.5
TWI60G1706 Tripterygium wilfordii HOM05D004026 ORTHO05D004712 1.1e-30 136.7 71 100.0
CiPaw.16G013200 Carya illinoinensis HOM05D004026 ORTHO05D004712 2.5e-30 135.6 71 98.6
MD10G1024600 Malus domestica HOM05D004026 ORTHO05D004712 3.3e-30 135.2 71 98.6
Prupe.3G148200 Prunus persica HOM05D004026 ORTHO05D004712 3.3e-30 135.2 71 98.6
Rhsim10G0141800 Rhododendron simsii HOM05D004026 ORTHO05D004712 7.3e-30 134.0 71 97.2
CsaV3_6G005290 Cucumis sativus L. HOM05D004026 ORTHO05D004712 1.2e-29 133.3 123 66.7
Ca_28109_v3 Cicer arietinum L. HOM05D004026 ORTHO05D004712 3.6e-29 131.7 69 98.6
Nitab4.5_0000004g0160 Nicotiana tabacum HOM05D004026 ORTHO05D004712 3.6e-29 131.7 71 94.4
AUR62013577 Chenopodium quinoa HOM05D004026 ORTHO05D004712 2.4e-28 129.0 70 92.9
Haze_27742 Corylus avellana HOM05D004026 ORTHO05D004712 4.4e-27 124.8 89 66.3
SalBow4G0880 Salvia bowleyana HOM05D004026 ORTHO05D004712 1.3e-26 123.2 99 69.7
Sc02g0004120 Simmondsia chinensis HOM05D004026 ORTHO05D004712 1.9e-25 119.4 61 98.4
Nitab4.5_0010284g0010 Nicotiana tabacum HOM05D004026 ORTHO05D004712 1.6e-24 116.3 59 98.3
Nitab4.5_0002064g0050 Nicotiana tabacum HOM05D004026 ORTHO05D004712 2.1e-24 115.9 58 96.6
MSTRG.22373 Avicennia marina HOM05D004026 ORTHO05D004712 1.0e-23 113.6 68 82.4
SHI20484 Sapria himalayana HOM05D004026 ORTHO05D004712 3.9e-23 111.7 59 89.8
Glyma.10G120000 Glycine max HOM05D004026 ORTHO05D004712 1.1e-22 110.2 61 93.4
C05p19920 Brassica napus HOM05D004026 ORTHO05D004712 5.6e-22 107.8 82 69.5
vmacro12827 Vaccinium macrocarpon HOM05D004026 ORTHO05D004712 8.1e-21 104.0 137 49.6
Oeu011940.1 Olea europaea HOM05D004026 ORTHO05D004712 9.0e-20 100.5 52 98.1
CiPaw.15G016800 Carya illinoinensis HOM05D004026 ORTHO05D004712 9.9e-19 97.1 52 94.2
RcHm_v2.0_Chr6g0275581 Rosa chinensis HOM05D004026 ORTHO05D004712 9.9e-19 97.1 52 94.2
Cfa023910 Carpinus fangiana HOM05D004026 ORTHO05D004712 1.3e-18 96.7 93 50.5
CBR_g88561 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-10 70.1 60 63.3


User provided reference genes

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