Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0074500 Salix brachista HOM05D004178 ORTHO05D005204 0.0e+00 2219.5 1196 100.0
Potri.003G107700 Populus trichocarpa HOM05D004178 ORTHO05D005204 0.0e+00 1627.8 1149 81.3
Manes.06G133600 Manihot esculenta HOM05D004178 ORTHO05D005204 0.0e+00 1315.4 1136 63.6
CiPaw.03G020700 Carya illinoinensis HOM05D004178 ORTHO05D005204 0.0e+00 1292.3 1149 61.0
Dinv06570 Davidia involucrata HOM05D004178 ORTHO05D005204 0.0e+00 1288.5 1135 62.1
Cfa008151 Carpinus fangiana HOM05D004178 ORTHO05D005204 0.0e+00 1280.0 1149 61.6
ClCG07G016820 Citrullus lanatus HOM05D004178 ORTHO05D005204 0.0e+00 1273.1 1133 61.3
CsaV3_4G004020 Cucumis sativus L. HOM05D004178 ORTHO05D005204 0.0e+00 1267.3 1134 60.8
Ciclev10004204m.g Citrus clementina HOM05D004178 ORTHO05D005204 0.0e+00 1264.2 1133 60.7
Sed0013674 Sechium edule HOM05D004178 ORTHO05D005204 0.0e+00 1263.4 1133 60.5
Nn6g33950 Nelumbo nucifera HOM05D004178 ORTHO05D005204 0.0e+00 1237.2 1146 59.1
QL09p005323 Quercus lobata HOM05D004178 ORTHO05D005204 0.0e+00 1233.4 1147 59.5
TAR375G0252 Trochodendron aralioides HOM05D004178 ORTHO05D005204 0.0e+00 1225.7 1100 60.7
GSVIVG01013865001 Vitis vinifera HOM05D004178 ORTHO05D005204 0.0e+00 1224.9 1118 60.3
MELO3C017663.2 Cucumis melo HOM05D004178 ORTHO05D005204 0.0e+00 1218.8 1183 57.6
Sopen05g030150 Solanum pennellii HOM05D004178 ORTHO05D005204 0.0e+00 1218.4 1133 58.9
Solyc05g051680.4 Solanum lycopersicum HOM05D004178 ORTHO05D005204 0.0e+00 1216.4 1133 58.8
Actinidia13583 Actinidia chinensis HOM05D004178 ORTHO05D005204 0.0e+00 1208.4 1146 57.9
TWI14G1279 Tripterygium wilfordii HOM05D004178 ORTHO05D005204 0.0e+00 1204.1 1148 58.7
Thecc.03G153700 Theobroma cacao HOM05D004178 ORTHO05D005204 0.0e+00 1192.6 1133 58.3
CSS0036077 Camellia sinensis var. sinensis HOM05D004178 ORTHO05D005204 0.0e+00 1186.8 1148 57.7
Lj1C978G4 Lonicera japonica HOM05D004178 ORTHO05D005204 0.0e+00 1184.5 1150 58.7
Aa31LG11G1940 Aethionema arabicum HOM05D004178 ORTHO05D005204 0.0e+00 1179.9 1133 56.5
Thhalv10003566m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 0.0e+00 1176.8 1143 56.6
Haze_13892 Corylus avellana HOM05D004178 ORTHO05D005204 0.0e+00 1176.0 1163 57.9
RcHm_v2.0_Chr1g0374131 Rosa chinensis HOM05D004178 ORTHO05D005204 0.0e+00 1168.7 1134 56.9
BcaC06g33151 Brassica carinata HOM05D004178 ORTHO05D005204 0.0e+00 1168.3 1135 56.0
BraA03t13829Z Brassica rapa HOM05D004178 ORTHO05D005204 0.0e+00 1166.4 1133 56.1
BcaC06g33236 Brassica carinata HOM05D004178 ORTHO05D005204 0.0e+00 1164.8 1133 55.9
BolC7t45036H Brassica oleracea HOM05D004178 ORTHO05D005204 0.0e+00 1164.8 1133 55.9
CARHR275220 Cardamine hirsuta HOM05D004178 ORTHO05D005204 0.0e+00 1163.7 1143 55.4
AT5G61460 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 0.0e+00 1158.7 1133 56.2
Nitab4.5_0000818g0230 Nicotiana tabacum HOM05D004178 ORTHO05D005204 0.0e+00 1157.5 1144 56.4
Sp2g24660 Schrenkiella parvula HOM05D004178 ORTHO05D005204 0.0e+00 1156.7 1144 56.2
Peaxi162Scf00167g00610 Petunia axillaris HOM05D004178 ORTHO05D005204 0.0e+00 1149.8 1095 58.4
Eucgr.A02900 Eucalyptus grandis HOM05D004178 ORTHO05D005204 0.0e+00 1149.4 1133 55.9
PGR042G0822 Punica granatum HOM05D004178 ORTHO05D005204 0.0e+00 1146.3 1129 55.9
Carub.0008s2215 Capsella rubella HOM05D004178 ORTHO05D005204 0.0e+00 1141.3 1143 55.3
FAN01G0652 Fragaria x ananassa HOM05D004178 ORTHO05D005204 0.0e+00 1138.6 1144 55.1
CDE11G0310 Ceratophyllum demersum HOM05D004178 ORTHO05D005204 0.0e+00 1123.6 1147 54.4
vmacro06815 Vaccinium macrocarpon HOM05D004178 ORTHO05D005204 0.0e+00 1119.4 1261 51.7
Aqoxy5G03870 Aquilegia oxysepala HOM05D004178 ORTHO05D005204 0.0e+00 1111.3 1130 55.7
AT5G07660 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 0.0e+00 1102.8 1144 53.2
C07p45140 Brassica napus HOM05D004178 ORTHO05D005204 0.0e+00 1102.8 1095 55.3
Rhsim03G0166000 Rhododendron simsii HOM05D004178 ORTHO05D005204 0.0e+00 1102.8 1203 52.9
FAN06G0596 Fragaria x ananassa HOM05D004178 ORTHO05D005204 0.0e+00 1102.4 1133 54.4
MD07G1252300 Malus domestica HOM05D004178 ORTHO05D005204 0.0e+00 1102.4 1133 54.1
A03p47060 Brassica napus HOM05D004178 ORTHO05D005204 0.0e+00 1102.0 1095 55.4
FAN06G2180 Fragaria x ananassa HOM05D004178 ORTHO05D005204 0.0e+00 1098.2 1133 54.2
Gorai.008G215500 Gossypium raimondii HOM05D004178 ORTHO05D005204 0.0e+00 1098.2 1133 54.4
Gohir.A12G197800 Gossypium hirsutum HOM05D004178 ORTHO05D005204 0.0e+00 1092.8 1133 54.3
Gohir.D12G200300 Gossypium hirsutum HOM05D004178 ORTHO05D005204 0.0e+00 1089.7 1133 54.2
Duzib084G0917 Durio zibethinus HOM05D004178 ORTHO05D005204 0.0e+00 1089.3 1142 54.6
MSTRG.8830 Avicennia marina HOM05D004178 ORTHO05D005204 0.0e+00 1088.9 1138 55.8
FvH4_7g27291 Fragaria vesca HOM05D004178 ORTHO05D005204 0.0e+00 1088.6 1133 54.1
VMungo1127G0288 Vigna mungo HOM05D004178 ORTHO05D005204 0.0e+00 1088.6 1146 52.4
Phvul.011G007300 Phaseolus vulgaris HOM05D004178 ORTHO05D005204 0.0e+00 1087.8 1146 51.9
PSO063G1916 Papaver somniferum HOM05D004178 ORTHO05D005204 0.0e+00 1083.9 1131 54.6
Carub.0006s0663 Capsella rubella HOM05D004178 ORTHO05D005204 0.0e+00 1082.0 1129 53.4
BraA02t04928Z Brassica rapa HOM05D004178 ORTHO05D005204 7.4e-311 1070.8 1146 52.2
HanXRQChr01g0028141 Helianthus annuus HOM05D004178 ORTHO05D005204 2.1e-310 1069.3 1129 53.1
Migut.F00486 Erythranthe guttata HOM05D004178 ORTHO05D005204 7.6e-308 1060.8 1161 52.6
Medtr4g036760 Medicago truncatula HOM05D004178 ORTHO05D005204 2.7e-305 1052.4 1145 51.4
AL8G38150 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 1.7e-304 1049.7 1026 56.2
Glyma.09G229900 Glycine max HOM05D004178 ORTHO05D005204 1.7e-304 1049.7 1129 51.2
Cc02_g04400 Coffea canephora HOM05D004178 ORTHO05D005204 1.1e-303 1047.0 1118 52.0
Lsat_1_v5_gn_9_51940 Lactuca sativa HOM05D004178 ORTHO05D005204 9.6e-303 1043.9 1145 52.0
Nitab4.5_0003647g0020 Nicotiana tabacum HOM05D004178 ORTHO05D005204 1.2e-302 1043.5 1148 52.4
Psat7g194520 Pisum sativum HOM05D004178 ORTHO05D005204 1.1e-301 1040.4 1144 51.0
ATR0317G120 Amborella trichopoda HOM05D004178 ORTHO05D005204 5.3e-301 1038.1 1131 51.4
FAN03G3201 Fragaria x ananassa HOM05D004178 ORTHO05D005204 5.3e-301 1038.1 1207 51.0
PSO782G3243 Papaver somniferum HOM05D004178 ORTHO05D005204 9.0e-301 1037.3 1133 54.9
Prupe.2G275800 Prunus persica HOM05D004178 ORTHO05D005204 3.4e-300 1035.4 1067 54.8
FAN10G0409 Fragaria x ananassa HOM05D004178 ORTHO05D005204 1.1e-298 1030.4 1130 52.2
Thhalv10012532m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 1.2e-297 1026.9 1145 50.9
Lalb_Chr19g0140351 Lupinus albus HOM05D004178 ORTHO05D005204 3.5e-297 1025.4 1129 51.4
ECA232G0935 Erigeron canadensis HOM05D004178 ORTHO05D005204 9.6e-295 1017.3 1129 51.2
CANSAT56G2947 Cannabis sativa HOM05D004178 ORTHO05D005204 3.1e-293 1012.3 1141 50.5
BcaB05g21602 Brassica carinata HOM05D004178 ORTHO05D005204 1.9e-290 1003.0 1133 50.3
Lj3g0020737 Lotus japonicus HOM05D004178 ORTHO05D005204 1.8e-288 996.5 1132 49.9
SGA_v2.0_scaffold2G01219 Striga asiatica HOM05D004178 ORTHO05D005204 3.2e-282 975.7 1158 49.4
TPR.G2991 Trifolium pratense HOM05D004178 ORTHO05D005204 2.3e-280 969.5 1145 48.3
Zm00001eb309160 Zea mays HOM05D004178 ORTHO05D005204 8.7e-280 967.6 1129 50.3
EL10Ac3g05856 Beta vulgaris HOM05D004178 ORTHO05D005204 1.5e-279 966.8 1181 47.2
Medtr4g061050 Medicago truncatula HOM05D004178 ORTHO05D005204 2.1e-278 963.0 1144 47.7
arahy.Tifrunner.gnm1.ann1.2YP1UN Arachis hypogaea HOM05D004178 ORTHO05D005204 9.0e-277 957.6 1175 47.1
TPR.G3678 Trifolium pratense HOM05D004178 ORTHO05D005204 1.3e-275 953.7 1144 47.6
arahy.Tifrunner.gnm1.ann1.D3FWW6 Arachis hypogaea HOM05D004178 ORTHO05D005204 1.0e-272 944.1 1177 46.4
AUR62015432 Chenopodium quinoa HOM05D004178 ORTHO05D005204 2.4e-269 932.9 1255 45.2
SalBow5G4122 Salvia bowleyana HOM05D004178 ORTHO05D005204 6.9e-269 931.4 1141 48.6
Sc19g0002080 Simmondsia chinensis HOM05D004178 ORTHO05D005204 2.7e-265 919.5 901 56.7
DCAR_014619 Daucus carota HOM05D004178 ORTHO05D005204 5.1e-264 915.2 900 56.8
Atru.chr1.752 Acer truncatum HOM05D004178 ORTHO05D005204 2.5e-258 896.3 813 59.7
C02p03240 Brassica napus HOM05D004178 ORTHO05D005204 2.7e-249 866.3 1010 49.5
BcaNung06187 Brassica carinata HOM05D004178 ORTHO05D005204 8.5e-243 844.7 1133 45.7
Ah.07g207660 Amaranthus hybridus HOM05D004178 ORTHO05D005204 2.2e-235 820.1 1142 44.0
AL6G18000 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 3.9e-219 766.1 824 51.8
unitig_37.g12493 Utricularia gibba HOM05D004178 ORTHO05D005204 1.6e-217 760.8 1117 41.5
SMO364G0410 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 2.8e-209 733.4 1133 40.3
COL.COLO4_14102 Corchorus olitorius HOM05D004178 ORTHO05D005204 5.2e-208 729.2 922 46.5
Pp3c11_11190 Physcomitrium patens HOM05D004178 ORTHO05D005204 2.9e-206 723.4 1129 39.7
HPP92_022323 Vanilla planifolia HOM05D004178 ORTHO05D005204 3.4e-199 699.9 713 53.3
Mapoly0003s0057 Marchantia polymorpha HOM05D004178 ORTHO05D005204 1.7e-195 687.6 1129 36.8
Oeu021707.2 Olea europaea HOM05D004178 ORTHO05D005204 3.0e-187 660.2 801 48.9
HPP92_022331 Vanilla planifolia HOM05D004178 ORTHO05D005204 3.0e-187 660.2 652 54.6
PGSC0003DMG400014287 Solanum tuberosum HOM05D004178 ORTHO05D005204 3.5e-180 636.7 649 53.9
AUR62002220 Chenopodium quinoa HOM05D004178 ORTHO05D005204 1.3e-177 628.2 872 44.4
AagrBONN_evm.TU.Sc2ySwM_228.971 Anthoceros agrestis HOM05D004178 ORTHO05D005204 6.2e-177 625.9 1131 39.9
FAN03G2333 Fragaria x ananassa HOM05D004178 ORTHO05D005204 3.2e-141 507.3 711 46.0
BcaC03g13191 Brassica carinata HOM05D004178 ORTHO05D005204 8.5e-118 429.5 478 50.6
CAN.G515.10 Capsicum annuum HOM05D004178 ORTHO05D005204 1.8e-112 411.8 282 74.5
HPP92_027283 Vanilla planifolia HOM05D004178 ORTHO05D005204 2.7e-111 407.9 564 44.7
Os09g0121050 Oryza sativa ssp. japonica HOM05D004178 ORTHO05D005204 4.3e-109 400.6 520 44.2
Atru.chr1.753 Acer truncatum HOM05D004178 ORTHO05D005204 2.8e-108 397.9 263 77.9
FAN10G1085 Fragaria x ananassa HOM05D004178 ORTHO05D005204 6.1e-108 396.7 365 60.0
SEGI_03190 Sequoiadendron giganteum HOM05D004178 ORTHO05D005204 8.0e-100 369.8 428 49.8
CAN.G515.9 Capsicum annuum HOM05D004178 ORTHO05D005204 1.5e-98 365.5 580 41.0
Cpa.g.sc121.6 Carica papaya HOM05D004178 ORTHO05D005204 7.8e-95 353.2 257 67.3
Hund11836 Selenicereus undatus HOM05D004178 ORTHO05D005204 4.3e-93 347.4 251 69.7
Ca_30729_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 4.7e-92 344.0 371 50.9
Oeu021706.1 Olea europaea HOM05D004178 ORTHO05D005204 5.2e-91 340.5 382 50.5
MCO11G708 Micromonas commoda HOM05D004178 ORTHO05D005204 4.4e-90 337.4 1174 29.0
Ah.02g120680 Amaranthus hybridus HOM05D004178 ORTHO05D005204 2.9e-81 308.1 593 36.4
CBR_g34600 Chara braunii HOM05D000019 ORTHO05D000048 8.1e-76 290.0 885 32.8
BolC2t06288H Brassica oleracea HOM05D004178 ORTHO05D005204 7.6e-74 283.5 303 50.5
Psat3g047440 Pisum sativum HOM05D004178 ORTHO05D005204 4.4e-66 257.7 307 48.2
AL6G18010 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 1.2e-63 249.6 162 75.3
PRCOL_00006025 Prasinoderma coloniale HOM05D004178 ORTHO05D005204 2.7e-63 248.4 1149 25.3
AL1G57860 Arabidopsis lyrata HOM05D004178 ORTHO05D005039 2.4e-59 235.3 285 48.8
Cpa.g.sc1936.1 Carica papaya HOM05D004178 ORTHO05D005204 1.9e-56 225.7 238 55.0
Glyma.12G006400 Glycine max HOM05D004178 ORTHO05D005204 1.1e-53 216.5 270 45.9
Ca_27645_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 2.8e-52 211.8 138 75.4
Ca_02789_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 9.0e-51 206.8 264 44.7
SHI13977 Sapria himalayana HOM05D004178 ORTHO05D005204 9.3e-48 196.8 137 75.2
Cpa.g.sc121.1 Carica papaya HOM05D004178 ORTHO05D005204 2.3e-46 192.2 110 85.5
Cre12.g525050 Chlamydomonas reinhardtii HOM05D004178 ORTHO05D005204 5.1e-46 191.0 1188 22.8
Ca_02791_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 8.7e-46 190.3 137 63.5
Cfa025728 Carpinus fangiana HOM05D004178 ORTHO05D005204 4.3e-45 188.0 1205 21.7
Haze_26632 Corylus avellana HOM05D004178 ORTHO05D005204 5.7e-45 187.6 1198 25.0
GSVIVG01014042001 Vitis vinifera HOM05D004178 ORTHO05D005204 2.8e-44 185.3 137 70.1
DCAR_014618 Daucus carota HOM05D004178 ORTHO05D005204 7.2e-40 170.6 145 55.2
Os09g0121000 Oryza sativa ssp. japonica HOM05D004178 ORTHO05D005204 3.4e-34 151.8 138 55.8
CARHR205510 Cardamine hirsuta HOM05D004178 ORTHO05D005204 2.2e-33 149.1 93 78.5
SHI13970 Sapria himalayana HOM05D004178 ORTHO05D005204 4.1e-27 128.3 285 31.9
AUR62042657 Chenopodium quinoa HOM05D004178 ORTHO05D005204 6.9e-27 127.5 289 35.6
GSVIVG01014044001 Vitis vinifera HOM05D004178 ORTHO05D005204 5.9e-26 124.4 103 68.0
Ca_02792_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 1.6e-23 116.3 236 35.2
SMO117G0047 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 3.3e-21 108.6 144 39.6
SMO137G0368 Selaginella moellendorffii HOM05D027672 ORTHO05D005204 4.2e-16 91.7 121 36.4
Sp7g06190 Schrenkiella parvula HOM05D004178 ORTHO05D005204 9.4e-16 90.5 206 33.5
AUR62042656 Chenopodium quinoa HOM05D004178 ORTHO05D005204 5.7e-13 81.3 76 61.8
QL07p015796 Quercus lobata HOM05D004178 ORTHO05D005204 6.3e-12 77.8 103 49.5
GSVIVG01014041001 Vitis vinifera HOM05D004178 ORTHO05D005204 5.3e-11 74.7 63 60.3
Cpa.g.sc121.4 Carica papaya HOM05D004178 ORTHO05D005204 2.0e-10 72.8 63 63.5
SMO302G0053 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 4.5e-10 71.6 135 34.8
RcHm_v2.0_Chr1g0342881 Rosa chinensis HOM05D004178 ORTHO05D005204 5.9e-10 71.2 114 41.2
SMO202G0076 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 1.3e-09 70.1 105 38.1
Cre12.g525100 Chlamydomonas reinhardtii HOM05D004178 ORTHO05D005204 2.2e-09 69.3 1211 19.8
PGSC0003DMG403030108 Solanum tuberosum HOM05D004178 ORTHO05D005204 1.6e-07 63.2 95 43.2
Medtr1g018410 Medicago truncatula HOM05D004178 ORTHO05D005204 8.0e-07 60.8 68 54.4
TPR.G14572 Trifolium pratense HOM05D005087 ORTHO05D006427 1.0e-06 60.5 629 19.2


User provided reference genes

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