Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 0.0e+00 1451.4 739 100.0
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 0.0e+00 1168.3 700 86.6
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 1.4e-275 953.0 782 66.9
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 5.2e-275 951.0 679 70.7
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 7.8e-271 937.2 642 73.7
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 1.3e-270 936.4 655 72.1
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 2.3e-270 935.6 645 73.3
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 1.2e-268 929.9 592 76.9
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 1.2e-268 929.9 649 71.8
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 3.6e-268 928.3 676 71.4
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 6.2e-268 927.5 671 70.3
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 1.8e-267 926.0 590 76.6
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 1.2e-266 923.3 587 76.7
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 2.0e-266 922.5 674 70.3
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 8.3e-265 917.1 638 71.8
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 3.2e-264 915.2 605 73.7
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 4.1e-264 914.8 619 72.7
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 4.1e-264 914.8 605 73.9
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 2.1e-263 912.5 675 68.9
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 6.0e-263 911.0 599 74.8
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 1.3e-262 909.8 605 73.6
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 2.3e-262 909.1 660 70.0
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 2.3e-262 909.1 690 67.7
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 1.1e-261 906.7 675 69.2
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 1.5e-261 906.4 676 68.8
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 7.3e-261 904.0 604 73.0
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 1.8e-259 899.4 581 75.7
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 4.0e-259 898.3 670 69.0
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 2.0e-258 896.0 588 75.2
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 7.6e-258 894.0 650 69.1
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 1.4e-256 889.8 608 72.4
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 3.2e-256 888.6 699 65.8
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 3.3e-253 878.6 653 67.5
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 2.8e-252 875.5 510 84.5
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 1.4e-251 873.2 601 72.0
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 2.4e-251 872.5 605 70.9
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 9.0e-251 870.5 663 66.5
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 1.5e-250 869.8 682 66.1
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 2.0e-250 869.4 637 68.9
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 3.4e-250 868.6 663 67.1
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 5.8e-250 867.8 645 68.4
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 7.6e-250 867.5 671 64.8
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 2.2e-249 865.9 590 72.4
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 8.4e-249 864.0 652 67.9
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 1.4e-248 863.2 638 68.2
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 1.0e-246 857.1 594 71.7
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 2.3e-246 855.9 658 66.0
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 8.7e-246 854.0 658 65.8
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 1.3e-244 850.1 574 73.3
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 6.2e-244 847.8 611 67.6
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 1.2e-242 843.6 667 64.9
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 2.6e-242 842.4 659 64.3
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 1.3e-241 840.1 583 71.9
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 8.4e-241 837.4 632 68.2
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 2.4e-240 835.9 654 67.0
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 5.4e-240 834.7 613 69.2
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 1.0e-238 830.5 597 67.8
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 1.8e-238 829.7 591 68.4
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 3.9e-238 828.6 706 61.3
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 1.1e-237 827.0 675 63.7
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 9.6e-237 823.9 600 67.5
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 1.1e-235 820.5 645 67.4
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 9.0e-235 817.4 703 61.0
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 1.5e-234 816.6 702 60.5
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 2.6e-234 815.8 689 61.2
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 5.8e-234 814.7 590 67.1
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 1.3e-233 813.5 596 66.4
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 1.3e-233 813.5 589 67.2
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 2.2e-233 812.8 687 61.3
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 3.8e-233 812.0 596 66.3
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 1.1e-232 810.4 603 65.8
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 1.1e-232 810.4 606 69.1
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 1.4e-232 810.1 672 62.6
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 1.4e-232 810.1 672 62.6
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 1.4e-232 810.1 672 62.6
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 1.4e-232 810.1 644 66.6
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 2.5e-232 809.3 687 61.3
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 2.5e-232 809.3 649 61.6
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 3.2e-232 808.9 618 65.2
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 9.3e-232 807.4 669 62.8
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 1.6e-231 806.6 697 61.3
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.3e-230 802.7 658 63.1
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 3.0e-230 802.4 602 65.3
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 3.3e-229 798.9 593 66.8
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 4.8e-228 795.0 587 65.8
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 3.1e-227 792.3 658 62.9
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 5.3e-227 791.6 629 63.1
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 6.9e-227 791.2 584 66.3
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 1.2e-226 790.4 584 66.3
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.0e-225 787.3 663 62.1
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 1.0e-222 777.3 647 60.4
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 1.0e-222 777.3 535 71.4
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 2.8e-220 769.2 692 57.7
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 1.1e-219 767.3 639 64.5
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 6.9e-219 764.6 622 61.4
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 1.6e-215 753.4 650 58.6
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.4e-214 750.4 707 57.0
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 2.3e-214 749.6 609 61.7
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 5.1e-214 748.4 655 60.8
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 2.8e-212 742.7 625 60.8
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.2e-207 727.2 628 59.9
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 4.1e-203 712.2 643 59.7
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 7.7e-194 681.4 655 57.9
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 1.5e-192 677.2 599 55.6
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 1.5e-192 677.2 615 58.7
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 7.2e-192 674.9 594 57.2
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 4.4e-189 665.6 623 54.4
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 2.9e-185 652.9 646 58.5
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 1.9e-184 650.2 700 52.1
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 1.0e-182 644.4 649 55.8
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 4.1e-179 632.5 597 53.1
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 3.5e-178 629.4 583 55.1
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 5.0e-177 625.5 530 58.9
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 2.3e-174 616.7 429 70.9
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 3.4e-173 612.8 676 48.7
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 1.0e-169 601.3 528 60.8
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 9.5e-168 594.7 593 55.0
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 4.0e-166 589.3 456 66.4
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 8.3e-164 581.6 476 64.9
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 1.9e-163 580.5 587 51.8
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 1.7e-161 573.9 650 51.2
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 3.9e-161 572.8 655 50.2
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 4.4e-157 559.3 445 66.7
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 6.4e-156 555.4 429 64.6
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 5.8e-149 532.3 498 55.8
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.7e-148 529.6 636 48.9
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 4.6e-146 522.7 463 56.8
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.3e-144 516.2 413 61.0
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.3e-144 516.2 413 61.3
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 2.6e-133 480.3 634 43.4
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.3e-132 478.0 483 54.2
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 1.6e-122 444.5 703 38.0
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 1.8e-113 414.5 615 38.9
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.5e-109 401.4 393 54.7
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 1.3e-105 388.3 580 36.7
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 1.5e-104 384.8 643 36.4
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.2e-103 380.9 418 48.8
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 2.7e-98 364.0 218 78.9
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 3.0e-97 360.5 294 58.5
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 3.1e-78 297.4 164 83.5
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 1.2e-74 285.4 154 86.4
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 1.6e-74 285.0 163 81.0
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.1e-70 272.3 140 88.6
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.5e-64 251.9 174 69.5
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 4.4e-64 250.4 165 70.9
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.1e-62 245.7 158 70.9
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.8e-62 245.0 158 70.9
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 2.3e-57 228.0 158 67.7
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 8.3e-55 219.5 125 79.2
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.4e-49 202.2 107 85.0
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 2.5e-43 181.4 113 74.3
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 4.7e-42 177.2 109 70.6
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 8.9e-41 172.9 110 73.6
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 4.6e-37 160.6 135 60.7
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 3.9e-36 157.5 137 60.6
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 8.9e-33 146.4 74 87.8
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 1.3e-31 142.5 151 49.7
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 6.4e-31 140.2 79 77.2
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 9.2e-30 136.3 119 51.3
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 3.6e-26 124.4 71 80.3
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 4.7e-26 124.0 59 93.2
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 1.7e-23 115.5 85 64.7
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 5.6e-19 100.5 74 63.5
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 4.5e-16 90.9 62 66.1
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.1e-13 82.0 50 70.0
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 3.3e-11 74.7 50 70.0
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 1.6e-10 72.4 44 77.3
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 1.5e-08 65.9 43 72.1
SGA_v2.0_scaffold94G28589 Striga asiatica HOM05D000645 ORTHO05D000494 8.4e-07 60.1 286 23.4
Rhsim11G0125000 Rhododendron simsii HOM05D004134 ORTHO05D339485 1.1e-06 59.7 73 49.3
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 1.1e-06 59.7 235 24.7
HanXRQChr08g0221231 Helianthus annuus HOM05D001260 ORTHO05D004134 7.1e-06 57.0 273 22.3


User provided reference genes

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