Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 1.2e-219 766.5 485 100.0
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 4.1e-188 661.8 492 87.8
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 9.9e-174 614.0 518 79.2
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 4.3e-169 598.6 493 80.9
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 1.8e-146 523.5 512 60.2
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 3.6e-123 446.0 495 63.4
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 4.0e-122 442.6 504 55.2
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 3.3e-121 439.5 493 58.6
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 1.4e-119 434.1 495 62.0
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 9.1e-119 431.4 506 53.8
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 2.9e-117 426.4 494 54.7
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 2.9e-117 426.4 494 54.7
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 1.1e-116 424.5 503 52.7
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 5.5e-116 422.2 502 53.0
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 1.2e-115 421.0 491 53.2
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 4.0e-114 416.0 497 60.0
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 8.8e-114 414.8 492 52.0
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 2.0e-113 413.7 491 56.0
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.7e-112 410.6 485 52.0
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 2.2e-112 410.2 492 58.3
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 2.4e-111 406.8 494 53.0
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 1.2e-110 404.4 495 51.9
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 2.0e-110 403.7 504 56.3
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 1.3e-109 401.0 489 55.8
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 1.7e-109 400.6 488 55.9
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 2.3e-109 400.2 515 50.9
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 3.8e-109 399.4 496 51.0
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 1.0e-106 391.3 501 51.7
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.0e-106 391.3 508 50.0
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.4e-106 391.0 494 50.4
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 3.0e-106 389.8 496 51.4
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 5.2e-106 389.0 491 50.7
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 3.4e-105 386.3 502 54.0
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 7.5e-105 385.2 499 58.7
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 7.5e-105 385.2 496 50.8
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 9.8e-105 384.8 503 49.9
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 1.3e-104 384.4 499 54.1
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 8.3e-104 381.7 498 49.8
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.4e-103 380.2 508 56.1
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.2e-102 377.9 517 49.3
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 1.6e-102 377.5 533 49.3
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 3.5e-102 376.3 505 50.3
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 1.0e-101 374.8 494 48.4
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 1.0e-101 374.8 488 53.1
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 1.3e-101 374.4 500 54.8
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 1.7e-101 374.0 503 51.5
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 2.3e-101 373.6 500 48.2
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.9e-101 373.2 516 48.8
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 8.6e-101 371.7 510 50.4
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 8.6e-101 371.7 505 49.5
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 1.5e-100 370.9 486 52.5
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.9e-100 370.5 502 49.2
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 4.3e-100 369.4 524 49.4
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 4.3e-100 369.4 497 52.1
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 7.3e-100 368.6 497 48.7
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 2.8e-99 366.7 525 47.2
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 3.6e-99 366.3 506 47.6
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 6.1e-99 365.5 490 50.6
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 1.8e-98 364.0 498 48.4
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 1.5e-97 360.9 510 51.2
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 3.4e-97 359.8 508 48.4
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 7.5e-97 358.6 509 51.5
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 7.5e-97 358.6 505 47.3
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 7.5e-97 358.6 493 47.7
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 9.8e-97 358.2 495 59.0
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 1.3e-96 357.8 524 48.3
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 1.3e-96 357.8 485 46.4
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 8.3e-96 355.1 496 51.0
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 1.1e-95 354.8 492 54.1
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 1.9e-95 354.0 496 51.2
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 4.1e-95 352.8 521 46.4
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 4.1e-95 352.8 493 50.5
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 1.6e-94 350.9 502 49.2
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.0e-94 350.5 488 51.2
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 2.0e-94 350.5 489 59.3
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 3.5e-94 349.7 489 51.5
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 1.7e-93 347.4 501 50.1
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 2.3e-93 347.1 515 46.0
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 3.0e-93 346.7 488 54.3
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 1.6e-91 340.9 502 48.2
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 3.6e-91 339.7 505 50.9
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 1.4e-90 337.8 498 51.6
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 2.3e-90 337.0 491 54.6
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 8.9e-90 335.1 500 50.0
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 2.0e-89 334.0 491 47.7
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 7.5e-89 332.0 508 46.3
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 2.9e-88 330.1 496 48.8
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 1.1e-87 328.2 507 45.6
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.1e-87 328.2 508 45.3
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 2.4e-87 327.0 510 52.4
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 3.2e-87 326.6 502 51.4
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 7.0e-87 325.5 502 45.4
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.6e-86 324.3 510 45.9
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 2.7e-86 323.6 490 50.8
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 4.6e-86 322.8 516 44.4
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.0e-85 321.6 500 50.8
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 1.3e-85 321.2 494 44.9
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.7e-85 320.9 505 45.7
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 2.3e-85 320.5 496 43.8
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 2.3e-85 320.5 235 71.9
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 3.9e-85 319.7 460 46.5
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 6.6e-85 318.9 514 44.0
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 1.1e-84 318.2 496 44.8
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.9e-84 317.4 500 50.6
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 4.3e-84 316.2 505 42.8
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 4.3e-84 316.2 509 45.4
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 1.6e-83 314.3 493 52.5
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 6.2e-83 312.4 490 49.6
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 1.1e-82 311.6 243 68.7
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 4.0e-82 309.7 502 48.2
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 5.2e-82 309.3 506 42.9
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 7.5e-81 305.4 507 42.4
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 1.3e-80 304.7 498 44.0
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 1.3e-80 304.7 498 43.2
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 2.9e-80 303.5 498 43.0
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 4.9e-80 302.8 487 43.7
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 4.9e-80 302.8 496 44.4
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 6.4e-80 302.4 497 42.9
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 3.5e-78 296.6 492 43.7
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 4.6e-78 296.2 496 42.7
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 4.6e-78 296.2 496 42.7
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 4.6e-78 296.2 496 42.7
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 1.3e-77 294.7 508 43.1
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 1.3e-77 294.7 501 47.5
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 3.9e-77 293.1 492 46.1
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 5.1e-77 292.7 493 50.5
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 1.9e-76 290.8 499 42.3
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 3.3e-76 290.0 493 41.8
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 3.6e-75 286.6 492 52.8
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 5.2e-74 282.7 488 40.6
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 6.8e-74 282.3 491 46.4
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 5.8e-73 279.3 423 43.0
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 7.6e-73 278.9 486 44.2
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.9e-71 274.2 497 40.8
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 2.4e-71 273.9 496 53.2
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 4.2e-71 273.1 505 40.4
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 1.2e-70 271.6 486 51.6
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 1.6e-70 271.2 494 41.3
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 1.6e-70 271.2 494 41.7
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 2.7e-70 270.4 492 44.3
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 1.6e-62 244.6 495 41.6
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 1.4e-58 231.5 521 38.2
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 1.8e-58 231.1 481 40.1
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 2.9e-56 223.8 523 37.1
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 1.6e-54 218.0 489 36.4
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 1.6e-54 218.0 489 36.4
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 4.6e-54 216.5 489 36.2
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.3e-53 214.2 402 42.0
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 9.6e-52 208.8 490 39.4
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 4.5e-49 199.9 488 39.3
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 5.5e-47 193.0 402 39.8
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 1.2e-46 191.8 146 67.8
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 6.5e-40 169.5 523 35.9
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 9.3e-39 165.6 405 35.3
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 6.0e-38 162.9 171 54.4
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 2.8e-35 154.1 512 32.2
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 8.2e-35 152.5 513 31.8
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 3.3e-28 130.6 86 69.8
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 1.8e-26 124.8 103 64.1
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 2.9e-24 117.5 134 45.5
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 5.1e-21 106.7 133 52.6
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 6.7e-21 106.3 89 64.0
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 1.1e-18 99.0 107 54.2
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 4.1e-18 97.1 125 52.0
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 4.1e-18 97.1 125 52.0
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 3.5e-17 94.0 283 31.1
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 4.5e-17 93.6 85 67.1
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 7.7e-17 92.8 86 55.8
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 3.8e-16 90.5 84 59.5
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 1.6e-14 85.1 67 62.7
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 2.1e-14 84.7 224 30.4
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 3.0e-13 80.9 137 41.6
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 1.1e-12 79.0 127 37.8
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 1.1e-12 79.0 127 37.8
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 3.7e-11 73.9 86 45.3
FAN09G3670 Fragaria x ananassa HOM05D003909 ORTHO05D004478 2.0e-09 68.2 63 57.1
MBI04_g43354_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 4.5e-09 67.0 89 52.8


User provided reference genes

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