Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 0.0e+00 1117.1 623 100.0
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 2.5e-238 828.9 458 88.0
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 6.2e-221 771.2 487 77.4
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.7e-218 763.1 487 76.8
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 5.5e-217 758.1 481 76.3
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 5.7e-214 748.0 459 78.6
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 5.0e-210 734.9 487 74.9
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 2.5e-209 732.6 475 74.7
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 1.2e-208 730.3 481 74.0
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 4.3e-206 721.8 468 75.6
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 4.8e-205 718.4 484 74.6
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 1.8e-204 716.5 490 72.9
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 2.6e-203 712.6 471 75.8
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 3.4e-203 712.2 494 71.3
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 3.4e-203 712.2 467 74.1
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 4.5e-203 711.8 458 75.3
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 5.9e-203 711.4 488 73.4
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 7.7e-203 711.1 483 72.5
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.7e-202 709.9 463 75.4
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 2.2e-202 709.5 459 74.5
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 3.8e-202 708.8 476 73.1
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 3.8e-202 708.8 468 72.9
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 5.0e-202 708.4 471 74.3
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 1.4e-201 706.8 487 72.3
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 1.4e-201 706.8 471 72.6
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 1.9e-201 706.4 459 73.9
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 9.4e-201 704.1 456 73.9
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 1.2e-200 703.7 480 72.7
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 1.2e-200 703.7 469 73.3
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 1.6e-200 703.4 471 73.0
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 3.6e-200 702.2 486 72.0
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 6.1e-200 701.4 488 71.7
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 6.1e-200 701.4 456 73.9
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 1.0e-199 700.7 488 71.5
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 1.4e-199 700.3 490 70.8
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 1.8e-199 699.9 481 72.8
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 3.0e-199 699.1 467 73.4
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 1.5e-198 696.8 466 72.7
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 2.5e-198 696.0 463 72.6
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 5.7e-198 694.9 482 72.8
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 7.4e-198 694.5 481 71.9
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 2.2e-197 693.0 480 71.5
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 1.8e-196 689.9 476 71.4
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 9.1e-196 687.6 526 67.9
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 3.4e-195 685.6 490 69.6
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 5.9e-195 684.9 499 69.1
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 5.9e-195 684.9 499 69.1
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 7.7e-195 684.5 463 71.9
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.7e-194 683.3 477 71.7
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 1.7e-194 683.3 494 68.8
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 3.8e-194 682.2 487 70.0
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 2.5e-193 679.5 477 71.1
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 7.2e-193 677.9 477 71.1
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 2.7e-192 676.0 463 71.5
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 6.1e-192 674.9 468 72.2
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 5.1e-191 671.8 463 72.4
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 1.1e-190 670.6 457 72.2
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 4.4e-190 668.7 435 74.5
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 1.3e-189 667.2 514 66.0
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 1.1e-188 664.1 494 69.2
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.8e-188 663.3 475 69.5
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 1.1e-185 654.1 500 67.4
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 8.0e-184 647.9 464 69.2
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.0e-183 647.5 490 66.7
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 1.4e-183 647.1 495 66.3
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 3.0e-183 646.0 449 70.4
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 3.0e-183 646.0 475 67.2
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 8.8e-183 644.4 466 68.9
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 1.1e-182 644.0 469 69.3
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 1.1e-182 644.0 471 69.4
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 2.0e-182 643.3 471 69.4
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 2.7e-179 632.9 468 68.6
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 8.5e-178 627.9 492 64.2
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 4.2e-177 625.5 480 66.0
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 5.5e-177 625.2 392 77.8
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 9.4e-177 624.4 481 65.3
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 4.7e-176 622.1 493 65.1
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 4.7e-176 622.1 467 67.5
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 3.0e-175 619.4 466 66.7
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 5.2e-175 618.6 477 65.4
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 1.2e-174 617.5 455 67.7
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 9.8e-174 614.4 477 65.4
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 1.7e-173 613.6 489 64.4
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 9.1e-172 607.8 458 66.8
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 1.6e-171 607.1 472 65.0
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 7.7e-171 604.7 409 71.6
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 1.0e-170 604.4 472 64.8
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 6.5e-170 601.7 484 64.5
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 6.5e-170 601.7 479 64.1
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 7.2e-169 598.2 479 62.6
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 6.1e-168 595.1 472 62.9
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 1.2e-166 590.9 497 62.4
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 4.4e-166 589.0 461 64.9
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 4.4e-166 589.0 460 64.1
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 5.4e-164 582.0 389 73.5
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 5.9e-163 578.6 436 67.2
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.0e-162 577.8 439 67.4
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 7.3e-161 571.6 469 61.4
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 9.5e-161 571.2 503 60.4
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 9.5e-161 571.2 423 67.6
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 1.6e-160 570.5 405 70.1
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 7.5e-158 561.6 460 63.0
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 1.1e-156 557.8 499 59.9
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 1.4e-156 557.4 492 60.2
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 6.8e-151 538.5 357 73.9
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 8.9e-151 538.1 443 63.0
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 4.6e-147 525.8 363 70.8
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 1.6e-144 517.3 347 72.0
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 1.1e-143 514.6 329 73.9
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 3.5e-131 473.0 320 71.9
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 6.0e-131 472.2 365 66.6
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 6.9e-127 458.8 328 69.2
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 7.8e-123 445.3 487 53.2
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 1.1e-121 441.4 335 67.5
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 4.2e-116 422.9 443 50.1
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 5.6e-113 412.5 333 62.2
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 2.9e-109 400.2 518 43.8
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 8.4e-109 398.7 405 52.1
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 2.3e-98 364.0 248 69.8
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 2.1e-96 357.5 365 48.2
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 1.9e-92 344.4 224 74.6
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 1.5e-89 334.7 270 64.8
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 1.0e-85 322.0 470 43.2
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 1.5e-81 308.1 269 59.9
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 8.0e-67 259.2 258 55.0
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 1.9e-60 238.0 215 60.9
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 5.7e-49 199.9 165 61.8
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 1.2e-43 182.2 142 65.5
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 5.2e-42 176.8 169 58.0
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 4.9e-32 143.7 108 70.4
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 7.0e-31 139.8 274 34.7
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 7.3e-28 129.8 86 72.1
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 6.2e-27 126.7 74 81.1
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 1.7e-21 108.6 278 31.3
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 5.2e-18 97.1 89 57.3
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 2.6e-17 94.7 198 34.3
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 1.1e-12 79.3 61 63.9
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.4e-07 62.4 86 46.5
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 5.4e-07 60.5 28 92.9
BolC1t01095H Brassica oleracea HOM05D005140 ORTHO05D006288 4.6e-06 57.4 66 50.0


User provided reference genes

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