Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0241 Selaginella moellendorffii HOM05D002121 ORTHO05D008891 1.7e-199 699.1 352 100.0
Mapoly0066s0098 Marchantia polymorpha HOM05D002121 ORTHO05D008891 2.4e-108 396.4 325 60.0
Pp3c15_7530 Physcomitrium patens HOM05D002121 ORTHO05D008891 4.9e-106 388.7 321 62.6
TWI32G0996 Tripterygium wilfordii HOM05D002121 ORTHO05D008891 3.0e-103 379.4 322 59.6
Ciclev10001657m.g Citrus clementina HOM05D002121 ORTHO05D008891 9.6e-102 374.4 326 58.3
Gorai.009G248000 Gossypium raimondii HOM05D002121 ORTHO05D008891 2.4e-100 369.8 332 56.3
Gohir.D05G239200 Gossypium hirsutum HOM05D002121 ORTHO05D008891 5.3e-100 368.6 332 56.0
Gohir.A05G237100 Gossypium hirsutum HOM05D002121 ORTHO05D008891 9.0e-100 367.9 332 56.3
Medtr3g088510 Medicago truncatula HOM05D002121 ORTHO05D008891 1.2e-99 367.5 319 56.7
Manes.02G166400 Manihot esculenta HOM05D002121 ORTHO05D008891 3.4e-99 365.9 325 56.0
AagrBONN_evm.TU.Sc2ySwM_228.2791 Anthoceros agrestis HOM05D002121 ORTHO05D008891 5.8e-99 365.2 325 58.5
Eucgr.F03811 Eucalyptus grandis HOM05D002121 ORTHO05D008891 5.8e-99 365.2 316 58.2
Thecc.08G129600 Theobroma cacao HOM05D002121 ORTHO05D008891 2.2e-98 363.2 331 56.2
Nn1g08892 Nelumbo nucifera HOM05D002121 ORTHO05D008891 2.9e-98 362.8 322 57.5
CANSAT25G1674 Cannabis sativa HOM05D002121 ORTHO05D008891 3.8e-98 362.5 347 53.6
CsaV3_6G034200 Cucumis sativus L. HOM05D002121 ORTHO05D008891 3.8e-98 362.5 330 55.5
Glyma.06G115500 Glycine max HOM05D002121 ORTHO05D008891 3.8e-98 362.5 330 55.8
arahy.Tifrunner.gnm1.ann1.IC0JL2 Arachis hypogaea HOM05D002121 ORTHO05D008891 4.9e-98 362.1 343 55.1
arahy.Tifrunner.gnm1.ann1.VL2KU3 Arachis hypogaea HOM05D002121 ORTHO05D008891 8.4e-98 361.3 344 54.9
Duzib093G0305 Durio zibethinus HOM05D002121 ORTHO05D008891 8.4e-98 361.3 336 54.5
FvH4_2g27490 Fragaria vesca HOM05D002121 ORTHO05D008891 1.1e-97 360.9 342 53.2
FAN15G1848 Fragaria x ananassa HOM05D002121 ORTHO05D008891 1.1e-97 360.9 342 53.2
VMungo1309G2347 Vigna mungo HOM05D002121 ORTHO05D008891 1.1e-97 360.9 321 56.4
SEGI_00220 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 1.9e-97 360.1 322 55.9
SEGI_39313 Sequoiadendron giganteum HOM05D002121 ORTHO05D008891 1.9e-97 360.1 322 55.9
Actinidia03419 Actinidia chinensis HOM05D002121 ORTHO05D008891 5.5e-97 358.6 328 56.1
RcHm_v2.0_Chr6g0296321 Rosa chinensis HOM05D002121 ORTHO05D008891 5.5e-97 358.6 345 52.2
Prupe.1G492700 Prunus persica HOM05D002121 ORTHO05D008891 7.1e-97 358.2 319 56.4
AL1G34880 Arabidopsis lyrata HOM05D002121 ORTHO05D008891 9.3e-97 357.8 303 59.4
BcaB07g32168 Brassica carinata HOM05D002121 ORTHO05D008891 2.1e-96 356.7 309 58.9
BraA06t24872Z Brassica rapa HOM05D002121 ORTHO05D008891 2.1e-96 356.7 305 59.7
Cpa.g.sc64.123 Carica papaya HOM05D002121 ORTHO05D008891 2.1e-96 356.7 316 57.6
FAN27G1590 Fragaria x ananassa HOM05D002121 ORTHO05D008891 2.1e-96 356.7 333 53.8
Atru.chr13.1527 Acer truncatum HOM05D002121 ORTHO05D008891 2.7e-96 356.3 318 56.3
Carub.0001s2115 Capsella rubella HOM05D002121 ORTHO05D008891 3.5e-96 355.9 314 57.6
A06p17800 Brassica napus HOM05D002121 ORTHO05D004000 4.6e-96 355.5 305 59.7
MELO3C010637.2 Cucumis melo HOM05D002121 ORTHO05D008891 4.6e-96 355.5 332 53.9
Phvul.009G127600 Phaseolus vulgaris HOM05D002121 ORTHO05D008891 4.6e-96 355.5 322 56.8
BcaB03g12775 Brassica carinata HOM05D002121 ORTHO05D008891 6.0e-96 355.1 304 59.5
Thhalv10008051m.g Eutrema salsugineum HOM05D002121 ORTHO05D008891 7.9e-96 354.8 303 59.4
Lalb_Chr23g0271121 Lupinus albus HOM05D002121 ORTHO05D008891 7.9e-96 354.8 347 53.3
AT1G21710 Arabidopsis thaliana HOM05D002121 ORTHO05D008891 1.3e-95 354.0 303 58.1
BolC5t30768H Brassica oleracea HOM05D002121 ORTHO05D004000 1.3e-95 354.0 303 60.1
CARHR022070 Cardamine hirsuta HOM05D002121 ORTHO05D008891 1.8e-95 353.6 321 56.1
BcaC05g26090 Brassica carinata HOM05D002121 ORTHO05D008891 2.3e-95 353.2 304 60.2
Haze_17516 Corylus avellana HOM05D002121 ORTHO05D008891 2.3e-95 353.2 326 56.4
Psat5g086080 Pisum sativum HOM05D002121 ORTHO05D008891 2.3e-95 353.2 321 54.8
Ca_16577_v3 Cicer arietinum L. HOM05D002121 ORTHO05D008891 3.0e-95 352.8 320 55.6
TAR376G0507 Trochodendron aralioides HOM05D002121 ORTHO05D008891 3.0e-95 352.8 341 53.1
THA.LOC104800213 Tarenaya hassleriana HOM05D002121 ORTHO05D008891 3.9e-95 352.4 306 58.2
COL.COLO4_37918 Corchorus olitorius HOM05D002121 ORTHO05D008891 5.1e-95 352.1 369 51.2
Migut.C01114 Erythranthe guttata HOM05D002121 ORTHO05D008891 8.7e-95 351.3 306 58.2
Cc10_g12290 Coffea canephora HOM05D002121 ORTHO05D008891 1.1e-94 350.9 347 53.0
C05p20690 Brassica napus HOM05D002121 ORTHO05D004000 1.5e-94 350.5 304 60.2
Sp1g19270 Schrenkiella parvula HOM05D002121 ORTHO05D008891 1.5e-94 350.5 318 56.3
QL09p033741 Quercus lobata HOM05D002121 ORTHO05D008891 1.9e-94 350.1 337 53.7
Hund17311 Selenicereus undatus HOM05D002121 ORTHO05D008891 2.5e-94 349.7 344 53.5
FAN20G0023 Fragaria x ananassa HOM05D002121 ORTHO05D008891 3.3e-94 349.4 330 54.2
SGA_v2.0_scaffold52G18936 Striga asiatica HOM05D002121 ORTHO05D008891 3.3e-94 349.4 302 57.0
Aqoxy6G00263 Aquilegia oxysepala HOM05D002121 ORTHO05D008891 5.6e-94 348.6 320 56.9
Aa31LG7G5680 Aethionema arabicum HOM05D002121 ORTHO05D008891 1.6e-93 347.1 329 53.8
DCAR_014379 Daucus carota HOM05D001700 ORTHO05D002131 1.6e-93 347.1 337 54.6
MSTRG.25368 Avicennia marina HOM05D002121 ORTHO05D008891 4.8e-93 345.5 306 56.9
CSS0024419 Camellia sinensis var. sinensis HOM05D002121 ORTHO05D008891 6.2e-93 345.1 319 56.1
Dinv27282 Davidia involucrata HOM05D002121 ORTHO05D008891 1.1e-92 344.4 314 56.7
CDE08G1413 Ceratophyllum demersum HOM05D002121 ORTHO05D008891 1.4e-92 344.0 321 51.4
HanXRQChr05g0148721 Helianthus annuus HOM05D002121 ORTHO05D008891 1.4e-92 344.0 308 56.5
Lj1g0016880 Lotus japonicus HOM05D002121 ORTHO05D008891 1.4e-92 344.0 339 52.8
ATR0709G083 Amborella trichopoda HOM05D002121 ORTHO05D008891 1.8e-92 343.6 335 55.5
MBI06_g04552_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 3.1e-92 342.8 324 54.6
Lsat_1_v5_gn_6_97640 Lactuca sativa HOM05D002121 ORTHO05D008891 4.0e-92 342.4 330 54.8
CiPaw.15G034100 Carya illinoinensis HOM05D002121 ORTHO05D008891 6.9e-92 341.7 362 51.7
Potri.005G180700 Populus trichocarpa HOM05D002121 ORTHO05D008891 6.9e-92 341.7 328 53.4
Sc15g0002960 Simmondsia chinensis HOM05D002121 ORTHO05D008891 6.9e-92 341.7 308 57.1
Nitab4.5_0000111g0140 Nicotiana tabacum HOM05D002121 ORTHO05D008891 9.0e-92 341.3 344 52.6
HPP92_011391 Vanilla planifolia HOM05D002121 ORTHO05D008891 9.0e-92 341.3 313 56.9
CAN.G1391.3 Capsicum annuum HOM05D002121 ORTHO05D008891 1.2e-91 340.9 325 54.5
PGSC0003DMG400009246 Solanum tuberosum HOM05D002121 ORTHO05D008891 1.5e-91 340.5 335 54.3
EL10Ac1g00004 Beta vulgaris HOM05D002121 ORTHO05D008891 5.8e-91 338.6 313 53.7
AUR62002267 Chenopodium quinoa HOM05D002121 ORTHO05D008891 7.6e-91 338.2 316 52.2
Rhsim11G0070100 Rhododendron simsii HOM05D002121 ORTHO05D008891 2.9e-90 336.3 305 57.4
Sopen11g009470 Solanum pennellii HOM05D002121 ORTHO05D008891 2.9e-90 336.3 340 52.9
Os02g0552600 Oryza sativa ssp. japonica HOM05D002121 ORTHO05D008891 1.9e-89 333.6 331 54.1
Zm00001eb243580 Zea mays HOM05D002121 ORTHO05D008891 5.5e-89 332.0 361 51.8
FAN24G0685 Fragaria x ananassa HOM05D002121 ORTHO05D008891 7.1e-89 331.6 342 50.6
PSO170G0582 Papaver somniferum HOM05D002121 ORTHO05D008891 2.3e-87 326.6 325 52.9
ClCG08G005910 Citrullus lanatus HOM05D002121 ORTHO05D008891 5.1e-87 325.5 318 52.5
vmacro00852 Vaccinium macrocarpon HOM05D002121 ORTHO05D008891 3.7e-85 319.3 359 49.6
Ah.05g171490 Amaranthus hybridus HOM05D002121 ORTHO05D008891 6.3e-85 318.5 343 47.8
Peaxi162Scf00310g00513 Petunia axillaris HOM05D002121 ORTHO05D008891 5.0e-82 308.9 318 52.2
Dinv14647 Davidia involucrata HOM05D002121 ORTHO05D008891 7.2e-81 305.1 272 56.2
Cre01.g063632 Chlamydomonas reinhardtii HOM05D002121 ORTHO05D008891 3.7e-77 292.7 416 42.5
Lj7A344T50 Lonicera japonica HOM05D002121 ORTHO05D008891 1.4e-76 290.8 261 55.9
Sabra05G0136700 Salix brachista HOM05D002121 ORTHO05D008891 6.5e-74 282.0 235 58.3
Solyc11g018510.2 Solanum lycopersicum HOM05D002121 ORTHO05D008891 3.2e-73 279.6 267 53.9
Sed0022381 Sechium edule HOM05D002121 ORTHO05D008891 4.2e-73 279.3 277 52.3
DCAR_002302 Daucus carota HOM05D002121 ORTHO05D008891 9.4e-73 278.1 266 54.9
MCO08G296 Micromonas commoda HOM05D002121 ORTHO05D008891 2.7e-72 276.6 398 41.2
Hma1.2p1_0612F.1_g188790 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 5.1e-71 272.3 248 54.8
AUR62015427 Chenopodium quinoa HOM05D002121 ORTHO05D008891 6.3e-61 238.8 304 43.1
unitig_699.g19768 Utricularia gibba HOM05D002121 ORTHO05D003088 8.2e-61 238.4 313 43.5
CAN.G1347.2 Capsicum annuum HOM05D002121 ORTHO05D008891 2.6e-59 233.4 323 44.3
BcaB03g12777 Brassica carinata HOM05D002121 ORTHO05D008891 9.4e-57 224.9 197 58.9
GSVIVG01008832001 Vitis vinifera HOM05D002121 ORTHO05D008891 1.2e-56 224.6 170 62.9
ECA246G4340 Erigeron canadensis HOM05D002121 ORTHO05D008891 3.7e-53 213.0 191 56.0
SalBow7G2694 Salvia bowleyana HOM05D002121 ORTHO05D008891 3.7e-53 213.0 182 57.7
Migut.C00404 Erythranthe guttata HOM05D002121 ORTHO05D008891 1.7e-50 204.1 240 46.7
Oeu032210.1 Olea europaea HOM05D002121 ORTHO05D008891 2.5e-41 173.7 147 59.2
Sc15g0002990 Simmondsia chinensis HOM05D002121 ORTHO05D008891 1.6e-40 171.0 166 53.6
MBI06_g44498_MAGBIO Magnolia biondii HOM05D002121 ORTHO05D008891 1.2e-32 144.8 159 47.2
Sc15g0002970 Simmondsia chinensis HOM05D002121 ORTHO05D008891 2.7e-27 127.1 138 50.7
PRCOL_00001975 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 1.0e-23 115.2 242 33.9
RcHm_v2.0_Chr2g0118881 Rosa chinensis HOM05D002121 ORTHO05D008891 5.2e-23 112.8 97 53.6
Cfa022494 Carpinus fangiana HOM05D002121 ORTHO05D008891 1.4e-20 104.8 215 36.3
PRCOL_00004066 Prasinoderma coloniale HOM05D002121 ORTHO05D008891 4.7e-16 89.7 155 33.5
CBR_g3761 Chara braunii HOM05D002121 ORTHO05D008891 3.4e-14 83.6 193 30.1
HanXRQChr15g0473481 Helianthus annuus HOM05D002121 ORTHO05D008891 3.7e-13 80.1 50 68.0
Hma1.2p1_0612F.1_g188810 Hydrangea macrophylla HOM05D002121 ORTHO05D008891 6.6e-10 69.3 57 63.2
CsaV3_1G008250 Cucumis sativus L. HOM05D007129 ORTHO05D008680 6.8e-07 59.3 160 30.6
Glyma.U031407 Glycine max HOM05D007129 ORTHO05D008680 2.0e-06 57.8 100 38.0
SalBow6G7050 Salvia bowleyana HOM05D007129 ORTHO05D008680 7.6e-06 55.8 58 51.7
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 7.6e-06 55.8 98 38.8
MSTRG.9665 Avicennia marina HOM05D007129 ORTHO05D008680 9.9e-06 55.5 58 51.7
Sabra15G0076600 Salix brachista HOM05D007129 ORTHO05D008680 9.9e-06 55.5 101 38.6
Solyc03g113880.4 Solanum lycopersicum HOM05D007129 ORTHO05D008680 9.9e-06 55.5 87 40.2
Sopen03g032940 Solanum pennellii HOM05D007129 ORTHO05D008680 9.9e-06 55.5 87 40.2
PGSC0003DMG401024472 Solanum tuberosum HOM05D007129 ORTHO05D008680 9.9e-06 55.5 87 40.2


User provided reference genes

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