Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 0.0e+00 1454.9 746 100.0
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 0.0e+00 1157.5 636 89.8
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 2.3e-270 935.6 652 66.0
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 7.6e-266 920.6 704 62.9
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 1.0e-249 867.1 702 60.4
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 7.2e-240 834.3 657 61.5
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 2.7e-239 832.4 665 60.5
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 7.4e-237 824.3 685 59.1
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 9.7e-237 823.9 685 59.1
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 6.3e-236 821.2 685 58.7
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 2.4e-235 819.3 662 58.9
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 3.1e-235 818.9 689 58.8
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 4.1e-235 818.5 658 60.2
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 5.3e-235 818.1 658 59.6
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 7.0e-235 817.8 705 57.9
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 2.0e-234 816.2 640 61.1
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 2.0e-234 816.2 643 60.3
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 5.9e-234 814.7 697 57.8
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.0e-233 813.9 655 60.6
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 1.7e-233 813.1 679 59.5
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 2.9e-233 812.4 644 60.4
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 3.8e-233 812.0 642 60.1
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 6.5e-233 811.2 673 59.6
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 8.5e-233 810.8 674 58.9
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 1.1e-232 810.4 687 58.4
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 2.5e-232 809.3 662 60.4
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 4.2e-232 808.5 687 57.9
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 7.2e-232 807.7 663 59.1
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 1.6e-231 806.6 687 57.6
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 3.6e-231 805.4 652 59.5
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 6.1e-231 804.7 680 59.0
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 1.1e-229 800.4 655 59.5
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 2.6e-229 799.3 696 56.9
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 3.3e-229 798.9 650 60.0
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 3.3e-229 798.9 671 58.4
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 7.4e-229 797.7 662 58.6
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 9.7e-229 797.3 653 58.8
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 2.2e-228 796.2 701 57.2
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 1.1e-227 793.9 599 64.6
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 1.1e-227 793.9 688 57.7
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 1.4e-227 793.5 674 58.3
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 1.8e-227 793.1 688 57.4
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 2.4e-227 792.7 657 58.4
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 5.3e-227 791.6 637 60.3
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 9.1e-227 790.8 666 58.9
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 1.6e-226 790.0 655 58.6
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 1.6e-226 790.0 670 58.5
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 2.0e-226 789.6 706 56.2
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.6e-226 789.3 647 59.7
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 3.5e-226 788.9 664 58.7
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 3.5e-226 788.9 664 58.7
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 3.5e-226 788.9 664 58.7
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 3.5e-226 788.9 639 59.8
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 4.5e-226 788.5 639 59.3
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 2.2e-225 786.2 683 57.7
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 2.9e-225 785.8 651 57.6
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 3.8e-225 785.4 683 55.8
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 3.8e-225 785.4 663 58.5
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 8.5e-225 784.3 653 59.1
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 1.9e-224 783.1 640 59.7
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 2.5e-224 782.7 651 59.1
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 7.2e-224 781.2 650 59.1
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 9.4e-224 780.8 639 59.2
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 1.6e-223 780.0 642 59.3
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 1.6e-223 780.0 650 58.9
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 1.6e-223 780.0 638 59.2
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 2.7e-223 779.2 651 58.8
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 3.6e-223 778.9 641 59.3
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 4.7e-223 778.5 651 58.8
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 8.0e-223 777.7 646 58.7
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 1.4e-222 776.9 635 58.7
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 1.8e-222 776.5 646 58.4
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 1.8e-222 776.5 642 59.2
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 2.3e-222 776.2 648 58.2
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 3.0e-222 775.8 648 58.0
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 4.0e-222 775.4 647 58.6
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 3.4e-221 772.3 673 56.2
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 4.4e-221 771.9 660 58.5
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 4.4e-221 771.9 644 57.3
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 1.3e-220 770.4 697 55.5
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 2.8e-220 769.2 666 57.7
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 2.8e-220 769.2 666 57.5
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 6.3e-220 768.1 637 58.6
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 1.4e-219 766.9 693 55.3
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 2.2e-217 759.6 633 58.5
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 2.5e-216 756.1 590 61.0
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 9.4e-216 754.2 647 57.5
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 1.5e-213 746.9 637 56.8
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 9.8e-213 744.2 637 56.8
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 6.3e-212 741.5 711 53.3
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 2.0e-210 736.5 643 56.1
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 7.7e-210 734.6 688 54.4
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 7.7e-210 734.6 640 56.2
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 2.9e-209 732.6 628 56.7
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 1.5e-208 730.3 685 52.8
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 5.6e-208 728.4 684 52.9
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 8.0e-207 724.5 585 60.0
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 1.8e-206 723.4 612 58.3
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 2.3e-201 706.4 648 53.5
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.8e-199 699.5 684 52.3
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.3e-198 696.4 715 50.5
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 3.1e-198 696.0 658 53.3
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 4.0e-198 695.7 648 54.6
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 6.8e-198 694.9 559 59.7
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 7.5e-197 691.4 575 58.8
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 5.4e-195 685.3 728 49.5
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 2.5e-192 676.4 686 51.0
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 4.0e-190 669.1 723 49.7
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 8.3e-188 661.4 659 52.2
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.4e-187 659.8 681 50.7
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 3.2e-187 659.4 623 54.4
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 2.3e-185 653.3 670 50.9
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 2.6e-173 613.2 573 52.9
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 1.9e-171 607.1 748 45.1
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 4.2e-171 605.9 692 47.0
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 2.0e-165 587.0 561 54.4
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 5.8e-165 585.5 463 61.6
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 1.3e-164 584.3 706 45.3
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 6.4e-164 582.0 481 60.1
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 7.1e-163 578.6 557 52.6
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.2e-162 577.8 467 60.6
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 7.4e-160 568.5 436 61.5
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 5.3e-158 562.4 452 59.1
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.2e-155 552.7 424 59.9
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.3e-153 547.7 424 58.7
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.1e-152 544.7 656 45.7
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 1.6e-151 540.8 672 42.7
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 6.2e-151 538.9 476 54.8
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 2.0e-149 533.9 652 44.8
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 3.4e-149 533.1 409 63.3
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 2.9e-148 530.0 437 58.1
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 1.8e-142 510.8 706 41.9
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 4.6e-130 469.5 680 41.5
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 3.9e-129 466.5 635 40.3
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 4.1e-126 456.4 337 65.6
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.2e-122 444.9 445 50.6
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.6e-88 330.9 340 49.4
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 9.8e-88 328.9 454 41.0
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 2.0e-72 278.1 222 58.1
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 7.8e-69 266.2 187 67.4
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 2.1e-66 258.1 187 65.2
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 3.4e-64 250.8 193 62.7
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 7.6e-64 249.6 189 64.6
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 1.7e-63 248.4 189 63.5
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 3.2e-62 244.2 183 63.9
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 2.1e-58 231.5 163 65.0
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 8.9e-57 226.1 154 66.9
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 1.3e-52 212.2 187 56.1
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 4.8e-50 203.8 145 64.8
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 2.6e-48 198.0 135 68.1
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.9e-47 194.5 170 57.1
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 3.9e-44 184.1 151 58.9
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.3e-36 158.3 103 69.9
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 1.1e-35 156.0 110 69.1
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 2.7e-29 134.8 83 75.9
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.0e-28 132.9 102 61.8
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 1.8e-28 132.1 101 60.4
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 8.2e-26 123.2 79 70.9
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.8e-20 105.5 76 63.2
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 1.8e-20 105.5 84 58.3
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 5.7e-19 100.5 66 66.7
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 3.7e-18 97.8 111 40.5
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 1.4e-17 95.9 129 41.9
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 2.5e-14 85.1 85 50.6
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 1.1e-11 76.3 52 67.3
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.8e-10 71.6 50 60.0
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 4.1e-09 67.8 45 68.9
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 5.3e-09 67.4 38 76.3
Rhsim04G0099500 Rhododendron simsii HOM05D004736 ORTHO05D006424 6.5e-07 60.5 123 30.1
HPP92_003386 Vanilla planifolia HOM05D004736 ORTHO05D006424 2.5e-06 58.5 105 30.5
HPP92_003388 Vanilla planifolia HOM05D004736 ORTHO05D006424 2.5e-06 58.5 105 30.5
ClCG10G017240 Citrullus lanatus HOM05D004736 ORTHO05D006424 3.2e-06 58.2 123 30.1
Lsat_1_v5_gn_1_13520 Lactuca sativa HOM05D004736 ORTHO05D006424 5.5e-06 57.4 123 29.3
Hund25080 Selenicereus undatus HOM05D001335 ORTHO05D001184 5.5e-06 57.4 84 38.1
FAN23G0361 Fragaria x ananassa HOM05D002634 ORTHO05D003100 7.2e-06 57.0 410 20.2
Gohir.A01G196200 Gossypium hirsutum HOM05D004736 ORTHO05D006424 7.2e-06 57.0 105 29.5
Gohir.D01G186500 Gossypium hirsutum HOM05D004736 ORTHO05D006424 7.2e-06 57.0 105 29.5
Gorai.002G229900 Gossypium raimondii HOM05D004736 ORTHO05D006424 7.2e-06 57.0 105 29.5
PSO063G6203 Papaver somniferum HOM05D001335 ORTHO05D001184 7.2e-06 57.0 129 32.6
PSO782G0874 Papaver somniferum HOM05D001335 ORTHO05D001184 7.2e-06 57.0 129 32.6
TPR.G3207 Trifolium pratense HOM05D002943 ORTHO05D002685 7.2e-06 57.0 99 35.4
unitig_26.g9041 Utricularia gibba HOM05D004736 ORTHO05D006424 9.4e-06 56.6 105 29.5


User provided reference genes

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