Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 9.2e-303 1042.7 518 100.0
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 4.1e-210 734.9 499 70.5
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 1.3e-208 729.9 497 71.2
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 5.0e-208 728.0 496 70.2
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 6.6e-208 727.6 509 70.1
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 8.6e-208 727.2 504 69.6
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 8.6e-208 727.2 497 71.2
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 1.1e-207 726.9 506 69.0
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 1.5e-207 726.5 504 69.6
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 2.5e-207 725.7 501 69.7
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 4.3e-207 724.9 504 69.6
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 5.6e-207 724.5 499 70.3
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 1.6e-206 723.0 503 70.2
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 1.6e-206 723.0 506 69.8
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 2.1e-206 722.6 497 70.2
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 2.1e-206 722.6 506 69.4
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 2.8e-206 722.2 502 69.1
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 6.2e-206 721.1 504 69.4
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 8.0e-206 720.7 504 68.8
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 1.0e-205 720.3 504 68.8
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 1.0e-205 720.3 496 70.0
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 1.0e-205 720.3 504 69.4
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 3.1e-205 718.8 498 69.7
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 6.8e-205 717.6 504 68.8
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 6.8e-205 717.6 504 68.3
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 1.2e-204 716.8 505 67.9
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 1.5e-204 716.5 496 70.0
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 2.6e-204 715.7 503 68.8
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 2.6e-204 715.7 500 69.2
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 4.4e-204 714.9 505 68.7
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 4.4e-204 714.9 502 68.7
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 5.8e-204 714.5 523 67.3
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 7.5e-204 714.1 503 68.4
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 7.5e-204 714.1 503 69.4
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 1.7e-203 713.0 514 68.1
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 1.7e-203 713.0 496 68.1
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 1.7e-203 713.0 507 68.4
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.7e-203 713.0 506 68.0
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 2.2e-203 712.6 507 68.2
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 2.9e-203 712.2 504 68.3
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 2.9e-203 712.2 506 67.8
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 4.9e-203 711.4 499 68.7
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 6.4e-203 711.1 498 68.3
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 8.3e-203 710.7 501 67.5
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 1.4e-202 709.9 498 67.9
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 1.9e-202 709.5 506 67.6
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 2.4e-202 709.1 499 68.9
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 3.2e-202 708.8 503 68.0
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 4.1e-202 708.4 523 66.7
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 5.4e-202 708.0 497 68.4
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 7.0e-202 707.6 499 68.5
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 9.2e-202 707.2 503 68.0
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 9.2e-202 707.2 500 68.0
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 9.2e-202 707.2 499 68.5
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 1.2e-201 706.8 502 67.9
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 1.6e-201 706.4 515 66.4
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 2.7e-201 705.7 503 67.8
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 4.6e-201 704.9 501 68.5
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 4.6e-201 704.9 498 67.7
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 6.0e-201 704.5 485 69.7
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 6.0e-201 704.5 490 69.4
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 6.0e-201 704.5 505 67.5
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 7.8e-201 704.1 504 68.1
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 7.8e-201 704.1 560 62.1
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 1.0e-200 703.7 496 67.9
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 1.3e-200 703.4 496 67.9
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 2.3e-200 702.6 488 69.5
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 2.3e-200 702.6 500 67.2
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 3.9e-200 701.8 485 69.5
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 6.6e-200 701.0 493 68.4
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 6.6e-200 701.0 498 68.1
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 1.5e-199 699.9 497 68.2
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 1.5e-199 699.9 483 68.9
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 4.3e-199 698.4 497 69.2
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 9.5e-199 697.2 506 67.4
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 4.7e-198 694.9 548 62.8
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 6.2e-198 694.5 475 70.3
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 8.1e-198 694.1 506 67.4
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 8.1e-198 694.1 506 67.4
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 8.1e-198 694.1 506 67.4
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 1.4e-197 693.3 525 65.5
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 7.5e-196 687.6 496 68.3
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 1.7e-195 686.4 458 71.6
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 4.9e-195 684.9 500 66.8
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 8.3e-195 684.1 481 69.0
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 1.9e-194 682.9 533 64.2
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 2.4e-194 682.6 501 67.1
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 9.2e-194 680.6 493 66.3
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 6.8e-189 664.5 533 62.3
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 9.9e-188 660.6 485 67.6
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 8.4e-187 657.5 480 67.5
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 2.1e-185 652.9 451 70.3
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 3.5e-185 652.1 515 63.3
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 1.0e-184 650.6 455 69.7
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 1.7e-184 649.8 524 61.6
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 2.8e-182 642.5 557 57.5
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 1.2e-177 627.1 501 64.1
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 3.6e-174 615.5 545 54.9
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 7.6e-172 607.8 500 61.2
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 9.3e-170 600.9 402 70.1
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.7e-163 580.1 484 62.0
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 1.4e-157 560.5 484 53.9
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 1.8e-157 560.1 343 74.9
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 5.8e-156 555.1 403 67.0
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 1.6e-150 537.0 478 54.6
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.3e-134 484.2 367 63.8
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 1.5e-132 477.2 515 48.7
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 8.2e-126 454.9 473 53.9
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 4.8e-118 429.1 539 45.8
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 1.3e-107 394.4 548 43.6
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.5e-103 380.9 257 68.1
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 2.2e-102 377.1 323 59.4
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 2.8e-102 376.7 532 40.8
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 1.4e-96 357.8 434 48.4
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 2.8e-89 333.6 329 55.3
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 4.4e-87 326.2 214 70.6
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 1.4e-80 304.7 194 72.7
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 4.7e-65 253.1 265 51.3
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 2.4e-56 224.2 168 63.1
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.2e-47 195.3 172 54.7
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 1.3e-38 165.2 95 80.0
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 1.2e-36 158.7 145 58.6
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 3.6e-28 130.6 115 61.7
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 3.3e-18 97.4 85 61.2
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 8.2e-17 92.8 86 57.0
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 2.2e-14 84.7 88 53.4
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 1.8e-08 65.1 80 46.2
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 5.3e-08 63.5 60 53.3
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 2.0e-07 61.6 64 51.6


User provided reference genes

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