Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO232G0091 Selaginella moellendorffii HOM05D004285 ORTHO05D005176 8.9e-143 510.4 278 100.0
GSVIVG01029745001 Vitis vinifera HOM05D004285 ORTHO05D005176 5.1e-66 255.4 222 64.9
Cpa.g.sc37.8 Carica papaya HOM05D004285 ORTHO05D005176 6.7e-66 255.0 225 64.9
Potri.007G101500 Populus trichocarpa HOM05D004285 ORTHO05D005176 8.8e-66 254.6 183 73.2
Gohir.A05G382800 Gossypium hirsutum HOM05D004285 ORTHO05D005176 4.3e-65 252.3 208 68.8
Gohir.D04G032400 Gossypium hirsutum HOM05D004285 ORTHO05D005176 4.3e-65 252.3 208 68.8
Potri.005G067700 Populus trichocarpa HOM05D004285 ORTHO05D005176 4.3e-65 252.3 223 64.1
Sabra07G0083700 Salix brachista HOM05D004285 ORTHO05D005176 4.3e-65 252.3 183 72.1
Sabra05G0055600 Salix brachista HOM05D004285 ORTHO05D005176 9.7e-65 251.1 209 67.0
CsaV3_4G030940 Cucumis sativus L. HOM05D004285 ORTHO05D005176 1.7e-64 250.4 211 68.2
Psat5g059640 Pisum sativum HOM05D004285 ORTHO05D005176 1.7e-64 250.4 201 68.7
TAR628G0040 Trochodendron aralioides HOM05D004285 ORTHO05D005176 2.2e-64 250.0 226 64.2
Atru.chr4.994 Acer truncatum HOM05D004285 ORTHO05D005176 6.3e-64 248.4 201 68.7
MELO3C008970.2 Cucumis melo HOM05D004285 ORTHO05D005176 6.3e-64 248.4 211 67.8
TWI79G0936 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 8.2e-64 248.1 226 62.8
VMungo1309G0657 Vigna mungo HOM05D004285 ORTHO05D005176 8.2e-64 248.1 201 68.7
Duzib264G0533 Durio zibethinus HOM05D004285 ORTHO05D005176 1.1e-63 247.7 220 65.0
Dinv12984 Davidia involucrata HOM05D004285 ORTHO05D005176 1.4e-63 247.3 174 75.9
Phvul.009G154500 Phaseolus vulgaris HOM05D004285 ORTHO05D005176 1.4e-63 247.3 201 68.2
SGA_v2.0_scaffold12G06217 Striga asiatica HOM05D004285 ORTHO05D005176 1.4e-63 247.3 193 69.4
Thecc.01G137100 Theobroma cacao HOM05D004285 ORTHO05D005176 1.4e-63 247.3 220 63.6
Glyma.06G155800 Glycine max HOM05D004285 ORTHO05D005176 2.4e-63 246.5 201 67.2
Gorai.012G036800 Gossypium raimondii HOM05D004285 ORTHO05D005176 2.4e-63 246.5 206 67.5
MBI04_g38139_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 2.4e-63 246.5 206 67.0
TAR376G0205 Trochodendron aralioides HOM05D004285 ORTHO05D005176 2.4e-63 246.5 224 62.1
AL6G19650 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 3.1e-63 246.1 202 67.8
Glyma.04G210200 Glycine max HOM05D004285 ORTHO05D005176 3.1e-63 246.1 201 67.2
Manes.06G003800 Manihot esculenta HOM05D004285 ORTHO05D005176 3.1e-63 246.1 217 62.7
Sed0015518 Sechium edule HOM05D004285 ORTHO05D005176 4.1e-63 245.7 174 74.1
Cc03_g16000 Coffea canephora HOM05D004285 ORTHO05D005176 5.3e-63 245.4 174 74.7
PGR102G2430 Punica granatum HOM05D004285 ORTHO05D005176 5.3e-63 245.4 207 66.2
FvH4_4g10490 Fragaria vesca HOM05D004285 ORTHO05D005176 6.9e-63 245.0 204 67.6
Lj4g0011662 Lotus japonicus HOM05D004285 ORTHO05D005176 6.9e-63 245.0 217 63.6
Lj1g0004585 Lotus japonicus HOM05D004285 ORTHO05D005176 9.1e-63 244.6 201 67.7
Ca_16982_v3 Cicer arietinum L. HOM05D004285 ORTHO05D005176 1.2e-62 244.2 203 65.0
Nitab4.5_0009744g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 1.5e-62 243.8 174 73.6
TPR.G33552 Trifolium pratense HOM05D004285 ORTHO05D005176 1.5e-62 243.8 174 74.7
Lalb_Chr11g0068611 Lupinus albus HOM05D004285 ORTHO05D005176 2.0e-62 243.4 201 67.7
CSS0033426 Camellia sinensis var. sinensis HOM05D004285 ORTHO05D005176 2.6e-62 243.0 225 62.2
Lalb_Chr08g0238191 Lupinus albus HOM05D004285 ORTHO05D005176 2.6e-62 243.0 201 67.2
Nitab4.5_0000668g0170 Nicotiana tabacum HOM05D004285 ORTHO05D005176 2.6e-62 243.0 223 62.3
Duzib187G0355 Durio zibethinus HOM05D004285 ORTHO05D005176 3.4e-62 242.7 222 64.0
Peaxi162Scf00169g00092 Petunia axillaris HOM05D004285 ORTHO05D005176 3.4e-62 242.7 220 64.1
Oeu050306.1 Olea europaea HOM05D004285 ORTHO05D005176 4.5e-62 242.3 181 70.2
AT5G09260 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 5.9e-62 241.9 174 74.1
FAN22G0010 Fragaria x ananassa HOM05D004285 ORTHO05D005176 5.9e-62 241.9 204 67.2
MD15G1135100 Malus domestica HOM05D004285 ORTHO05D005176 5.9e-62 241.9 202 65.8
EL10Ac8g20044 Beta vulgaris HOM05D004285 ORTHO05D005176 7.7e-62 241.5 220 62.7
CiPaw.03G117900 Carya illinoinensis HOM05D004285 ORTHO05D005176 7.7e-62 241.5 174 73.6
QL10p041258 Quercus lobata HOM05D004285 ORTHO05D005176 7.7e-62 241.5 204 65.2
QL10p041526 Quercus lobata HOM05D004285 ORTHO05D005176 7.7e-62 241.5 204 65.2
Sc03g0010160 Simmondsia chinensis HOM05D004285 ORTHO05D005176 7.7e-62 241.5 209 66.0
CANSAT80G1716 Cannabis sativa HOM05D004285 ORTHO05D005176 1.0e-61 241.1 174 71.3
Cfa002202 Carpinus fangiana HOM05D004285 ORTHO05D005176 1.0e-61 241.1 219 62.1
Ciclev10002389m.g Citrus clementina HOM05D004285 ORTHO05D005176 1.0e-61 241.1 221 61.5
RcHm_v2.0_Chr4g0406031 Rosa chinensis HOM05D004285 ORTHO05D005176 1.0e-61 241.1 204 66.7
arahy.Tifrunner.gnm1.ann1.054DCV Arachis hypogaea HOM05D004285 ORTHO05D005176 2.9e-61 239.6 199 67.3
arahy.Tifrunner.gnm1.ann1.GQS5IM Arachis hypogaea HOM05D004285 ORTHO05D005176 2.9e-61 239.6 199 67.3
PSO675G1889 Papaver somniferum HOM05D004285 ORTHO05D005176 2.9e-61 239.6 221 62.9
Hund21406 Selenicereus undatus HOM05D004285 ORTHO05D005176 3.8e-61 239.2 208 63.9
ECA234G4310 Erigeron canadensis HOM05D004285 ORTHO05D005176 5.0e-61 238.8 203 66.5
Prupe.4G274300 Prunus persica HOM05D004285 ORTHO05D005176 5.0e-61 238.8 212 63.7
MSTRG.22052 Avicennia marina HOM05D004285 ORTHO05D005176 6.5e-61 238.4 174 70.1
Sopen12g032480 Solanum pennellii HOM05D004285 ORTHO05D005176 8.5e-61 238.0 223 61.0
HanXRQChr09g0241311 Helianthus annuus HOM05D004285 ORTHO05D005176 1.4e-60 237.3 201 64.7
PSO407G0164 Papaver somniferum HOM05D004285 ORTHO05D005176 1.9e-60 236.9 174 71.8
VMungo1309G3080 Vigna mungo HOM05D004285 ORTHO05D005176 1.9e-60 236.9 198 67.2
ATR0706G129 Amborella trichopoda HOM05D004285 ORTHO05D005176 3.2e-60 236.1 248 58.1
AagrBONN_evm.TU.Sc2ySwM_228.3779 Anthoceros agrestis HOM05D004285 ORTHO05D005176 3.2e-60 236.1 204 67.6
CARHR277780 Cardamine hirsuta HOM05D004285 ORTHO05D005176 3.2e-60 236.1 222 60.8
unitig_736.g22477 Utricularia gibba HOM05D004285 ORTHO05D005176 4.2e-60 235.7 200 65.5
BcaC01g02639 Brassica carinata HOM05D004285 ORTHO05D005176 5.5e-60 235.3 191 66.5
Carub.0008s2465 Capsella rubella HOM05D004285 ORTHO05D005176 7.2e-60 235.0 202 64.4
PSO170G3147 Papaver somniferum HOM05D004285 ORTHO05D005176 7.2e-60 235.0 221 61.5
Aa31LG1G18000 Aethionema arabicum HOM05D004285 ORTHO05D005176 9.4e-60 234.6 221 59.7
Aqoxy6G00309 Aquilegia oxysepala HOM05D004285 ORTHO05D005176 1.6e-59 233.8 168 72.6
AUR62012692 Chenopodium quinoa HOM05D004285 ORTHO05D005176 1.6e-59 233.8 186 67.7
AUR62021963 Chenopodium quinoa HOM05D004285 ORTHO05D005176 1.6e-59 233.8 186 67.7
TWI75G0304 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 1.6e-59 233.8 226 59.7
AT5G63880 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 2.1e-59 233.4 202 63.9
C03p62560 Brassica napus HOM05D004285 ORTHO05D005176 2.1e-59 233.4 204 63.7
BolC3t18513H Brassica oleracea HOM05D004285 ORTHO05D005176 2.1e-59 233.4 204 63.7
Mapoly0073s0065 Marchantia polymorpha HOM05D004285 ORTHO05D005176 2.7e-59 233.0 269 51.7
HPP92_022156 Vanilla planifolia HOM05D004285 ORTHO05D005176 2.7e-59 233.0 207 62.3
BcaB02g09769 Brassica carinata HOM05D004285 ORTHO05D005176 3.6e-59 232.6 203 63.5
A06p30500 Brassica napus HOM05D004285 ORTHO05D005176 3.6e-59 232.6 191 66.0
DCAR_001476 Daucus carota HOM05D004285 ORTHO05D005176 3.6e-59 232.6 179 69.3
Medtr3g096680 Medicago truncatula HOM05D004285 ORTHO05D005176 3.6e-59 232.6 236 59.7
Thhalv10004899m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 6.1e-59 231.9 218 61.0
Actinidia20030 Actinidia chinensis HOM05D004285 ORTHO05D005176 7.9e-59 231.5 224 62.1
Haze_25379 Corylus avellana HOM05D004285 ORTHO05D005176 1.4e-58 230.7 255 54.9
Sp2g26940 Schrenkiella parvula HOM05D004285 ORTHO05D005176 1.4e-58 230.7 212 62.3
Zm00001eb183830 Zea mays HOM05D004285 ORTHO05D005176 1.4e-58 230.7 243 58.8
BcaNung04632 Brassica carinata HOM05D004285 ORTHO05D005176 2.3e-58 229.9 198 63.1
BcaNung04637 Brassica carinata HOM05D004285 ORTHO05D005176 2.3e-58 229.9 198 63.1
Carub.0006s0781 Capsella rubella HOM05D004285 ORTHO05D005176 2.3e-58 229.9 203 63.5
TPR.G24222 Trifolium pratense HOM05D004285 ORTHO05D005176 2.3e-58 229.9 166 74.7
Aa31LG3G17740 Aethionema arabicum HOM05D004285 ORTHO05D005176 1.1e-57 227.6 207 63.3
THA.LOC104818421 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 2.6e-57 226.5 197 64.5
Nn5g28435 Nelumbo nucifera HOM05D004285 ORTHO05D005176 3.3e-57 226.1 193 65.3
Zm00001eb246180 Zea mays HOM05D004285 ORTHO05D005176 3.3e-57 226.1 242 57.9
THA.LOC104819347 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 5.7e-57 225.3 222 59.0
Sp6g34050 Schrenkiella parvula HOM05D004285 ORTHO05D005176 1.3e-56 224.2 187 66.3
Thhalv10014638m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 1.1e-55 221.1 202 62.9
BraA06t25999Z Brassica rapa HOM05D004285 ORTHO05D005176 1.4e-55 220.7 213 59.2
AL8G41110 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 1.8e-55 220.3 202 61.4
CDE08G1470 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 1.8e-55 220.3 227 55.1
CiPaw.04G079800 Carya illinoinensis HOM05D004285 ORTHO05D005176 2.4e-55 219.9 174 69.0
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 5.3e-55 218.8 174 67.2
Solyc12g096650.2 Solanum lycopersicum HOM05D004285 ORTHO05D005176 1.2e-54 217.6 223 57.0
BcaB08g37222 Brassica carinata HOM05D004285 ORTHO05D005176 2.0e-54 216.9 212 59.4
CAN.G566.38 Capsicum annuum HOM05D004285 ORTHO05D005176 2.6e-54 216.5 225 56.9
Eucgr.H05139 Eucalyptus grandis HOM05D004285 ORTHO05D005176 3.5e-54 216.1 211 60.7
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 5.9e-54 215.3 208 59.6
AagrBONN_evm.TU.Sc2ySwM_117.2591 Anthoceros agrestis HOM05D004285 ORTHO05D005176 1.0e-53 214.5 255 55.7
CDE02G0727 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 6.5e-53 211.8 227 53.7
FAN10G2762 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.1e-52 211.1 202 59.9
Os02g0596500 Oryza sativa ssp. japonica HOM05D004285 ORTHO05D005176 1.9e-52 210.3 242 54.1
Nitab4.5_0008205g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 3.2e-52 209.5 174 66.7
BraA10t44845Z Brassica rapa HOM05D004285 ORTHO05D005176 1.6e-51 207.2 194 60.3
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 6.1e-51 205.3 230 53.9
FAN06G1556 Fragaria x ananassa HOM05D004285 ORTHO05D005176 6.1e-51 205.3 202 58.4
Lsat_1_v5_gn_4_38601 Lactuca sativa HOM05D004285 ORTHO05D005176 1.0e-50 204.5 249 49.4
FvH4_7g03820 Fragaria vesca HOM05D004285 ORTHO05D005176 1.8e-50 203.8 202 57.9
Rhsim08G0027500 Rhododendron simsii HOM05D004285 ORTHO05D005176 8.8e-50 201.4 170 63.5
FAN12G0473 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.1e-49 201.1 136 77.9
Peaxi162Scf01205g00036 Petunia axillaris HOM05D004285 ORTHO05D005176 1.1e-49 201.1 218 54.1
CAN.G607.7 Capsicum annuum HOM05D004285 ORTHO05D005176 3.1e-47 193.0 263 50.6
CARHR204160 Cardamine hirsuta HOM05D004285 ORTHO05D005176 5.3e-47 192.2 164 66.5
CBR_g70720 Chara braunii HOM05D004285 ORTHO05D005176 5.3e-47 192.2 202 55.9
Oeu022909.3 Olea europaea HOM05D004285 ORTHO05D005176 5.3e-47 192.2 148 69.6
Pp3c2_32100 Physcomitrium patens HOM05D004285 ORTHO05D005176 1.6e-46 190.7 247 50.2
Nitab4.5_0000013g0100 Nicotiana tabacum HOM05D004285 ORTHO05D005176 2.6e-46 189.9 191 59.2
COL.COLO4_35812 Corchorus olitorius HOM05D003519 ORTHO05D004443 3.5e-46 189.5 171 64.3
ClCG04G001580 Citrullus lanatus HOM05D004285 ORTHO05D005176 1.0e-45 188.0 191 58.6
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 1.1e-44 184.5 164 62.8
vmacro18460 Vaccinium macrocarpon HOM05D004285 ORTHO05D005176 6.1e-43 178.7 207 54.6
Lj2A489T51 Lonicera japonica HOM05D004285 ORTHO05D005176 4.4e-41 172.6 134 69.4
C09p68060 Brassica napus HOM05D004285 ORTHO05D005176 4.5e-38 162.5 132 65.9
C09p68120 Brassica napus HOM05D004285 ORTHO05D005176 4.5e-38 162.5 132 65.9
MBI18_g28836_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 2.3e-34 150.2 103 78.6
FAN03G0757 Fragaria x ananassa HOM05D004285 ORTHO05D005176 4.0e-34 149.4 201 48.3
Cre13.g589700 Chlamydomonas reinhardtii HOM05D004285 ORTHO05D005176 5.7e-33 145.6 177 46.9
FAN12G2135 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.7e-32 144.1 105 73.3
MBI04_g07580_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 6.6e-29 132.1 103 70.9
AL697U10010 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 4.0e-26 122.9 85 75.3
Migut.G00927 Erythranthe guttata HOM05D004285 ORTHO05D005176 5.2e-26 122.5 85 74.1
AagrBONN_evm.TU.Sc2ySwM_344.1024 Anthoceros agrestis HOM05D004285 ORTHO05D005176 4.9e-24 115.9 87 74.7
Aa31LG4G3130 Aethionema arabicum HOM05D004285 ORTHO05D005176 1.1e-20 104.8 150 46.0
AL1G38920 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 8.0e-19 98.6 73 71.2
Haze_26675 Corylus avellana HOM05D004285 ORTHO05D005176 1.4e-18 97.8 219 36.5
PRCOL_00005830 Prasinoderma coloniale HOM05D004285 ORTHO05D005176 2.6e-17 93.6 196 35.2
Cfa026504 Carpinus fangiana HOM05D004285 ORTHO05D005176 5.8e-17 92.4 198 34.8
FAN07G1696 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.7e-16 90.9 199 35.2
MCO14G274 Micromonas commoda HOM05D004285 ORTHO05D005176 4.9e-16 89.4 151 38.4
Actinidia06578 Actinidia chinensis HOM05D004285 ORTHO05D005176 1.6e-14 84.3 90 54.4
BolC9t59508H Brassica oleracea HOM05D004285 ORTHO05D005176 7.3e-12 75.5 69 62.3
C09p67470 Brassica napus HOM05D004285 ORTHO05D005176 1.2e-11 74.7 69 62.3
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 2.6e-09 67.0 84 50.0
CARHR204170 Cardamine hirsuta HOM05D004285 ORTHO05D005176 2.2e-08 63.9 38 78.9
AagrBONN_evm.TU.Sc2ySwM_344.1025 Anthoceros agrestis HOM05D004285 ORTHO05D005176 2.9e-08 63.5 136 41.2
C09p09560 Brassica napus HOM05D004285 ORTHO05D005176 4.9e-08 62.8 101 41.6
BolC7t40595H Brassica oleracea HOM05D001726 ORTHO05D001761 8.3e-08 62.0 197 26.4
A08p30650 Brassica napus HOM05D004285 ORTHO05D005176 1.9e-07 60.8 53 64.2
BraA07t27889Z Brassica rapa HOM05D001726 ORTHO05D001761 1.6e-06 57.8 203 26.6
Zm00001eb358220 Zea mays HOM05D001726 ORTHO05D001761 1.6e-06 57.8 216 27.8
A06p05780 Brassica napus HOM05D004285 ORTHO05D005176 2.1e-06 57.4 58 55.2
Zm00001eb061610 Zea mays HOM05D001726 ORTHO05D001761 2.1e-06 57.4 205 29.3
Sp7g27090 Schrenkiella parvula HOM05D001726 ORTHO05D001761 2.7e-06 57.0 207 27.1
A06p32110 Brassica napus HOM05D004285 ORTHO05D005176 3.5e-06 56.6 58 55.2
CBR_g44400 Chara braunii HOM05D001726 ORTHO05D001761 3.5e-06 56.6 198 29.3
MCO05G687 Micromonas commoda HOM05D001726 ORTHO05D001761 4.6e-06 56.2 215 28.8
PSO210G2747 Papaver somniferum HOM05D001726 ORTHO05D001761 4.6e-06 56.2 212 26.9
PSO339G1592 Papaver somniferum HOM05D001726 ORTHO05D001761 4.6e-06 56.2 188 27.1
AL3G48370 Arabidopsis lyrata HOM05D001726 ORTHO05D001761 6.0e-06 55.8 205 28.3
Aa31LG2G21470 Aethionema arabicum HOM05D001726 ORTHO05D001761 7.8e-06 55.5 208 27.9
AT2G19830 Arabidopsis thaliana HOM05D001726 ORTHO05D001761 7.8e-06 55.5 206 28.6


User provided reference genes

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