Gene: AT5G63880
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G63880
- Transcript Identifier AT5G63880.1
- Gene Type Coding gene
- Location Chr5 : 25563890-25565258 : positive
Gene Family Information
- ID HOM05D004285
- #Genes/#Species 166/93
- Phylogenetic origin
- ID ORTHO05D005176
- #Genes/#Species 163/93
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G63880.1
- symbol VPS20.1
- uniprot Q8GXN6
Descriptions
- Description SNF7 family protein
- Computational description VPS20.1; INVOLVED IN: vesicle-mediated transport, N-terminal protein myristoylation; LOCATED IN: ESCRT III complex, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting-associated protein 20.2 (TAIR:AT5G09260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0007034 | IEA | Gene Ontology | vacuolar transport | |
| GO:0007034 | IEA | InterPro | vacuolar transport | |
| GO:0016192 | ISS | Gene Ontology | vesicle-mediated transport | 1 |
| GO:0006900 | IBA | Gene Ontology | vesicle budding from membrane | 2 |
| GO:0032511 | IBA | Gene Ontology | late endosome to vacuole transport via multivesicular body sorting pathway | 2 |
| GO:0015031 | IEA | GOA Database | protein transport |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 3 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0000815 | ISS, IBA | Gene Ontology | ESCRT III complex | 2 4 |
| GO:0009536 | HDA | Gene Ontology | plastid | 5 |
| GO:0005771 | IBA | Gene Ontology | multivesicular body | 2 |
| GO:0005768 | IEA | GOA Database | endosome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005024 | Snf7 family |
| Mapman id | Description |
|---|---|
| 22.4.1.3.1 | Vesicle trafficking.endocytic trafficking.ESCRT-mediated sorting.ESCRT-III complex.component VPS20 |