Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 9.6e-67 256.5 116 100.0
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 6.4e-63 243.8 114 92.1
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.4e-62 242.7 114 93.9
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 1.9e-62 242.3 114 92.1
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 2.5e-62 241.9 114 92.1
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 3.2e-62 241.5 114 92.1
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 4.2e-62 241.1 114 93.0
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 7.1e-62 240.4 114 91.2
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 7.1e-62 240.4 114 91.2
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 9.3e-62 240.0 114 91.2
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 1.2e-61 239.6 114 91.2
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 1.2e-61 239.6 114 92.1
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 1.6e-61 239.2 114 90.4
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 1.6e-61 239.2 114 90.4
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 1.6e-61 239.2 114 90.4
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 2.1e-61 238.8 114 91.2
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 2.1e-61 238.8 114 91.2
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 2.1e-61 238.8 114 90.4
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 2.7e-61 238.4 114 89.5
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 2.7e-61 238.4 114 89.5
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 2.7e-61 238.4 114 91.2
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 2.7e-61 238.4 114 91.2
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 2.7e-61 238.4 114 91.2
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 2.7e-61 238.4 114 90.4
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 3.5e-61 238.0 114 91.2
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 3.5e-61 238.0 114 90.4
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 3.5e-61 238.0 114 93.0
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 3.5e-61 238.0 114 90.4
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 4.6e-61 237.7 114 89.5
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 4.6e-61 237.7 114 89.5
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 4.6e-61 237.7 114 91.2
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 4.6e-61 237.7 114 90.4
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 4.6e-61 237.7 114 89.5
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 4.6e-61 237.7 114 89.5
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 4.6e-61 237.7 114 89.5
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 6.0e-61 237.3 114 90.4
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 7.9e-61 236.9 114 89.5
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 1.0e-60 236.5 114 89.5
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 1.3e-60 236.1 114 89.5
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 1.3e-60 236.1 114 90.4
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 1.8e-60 235.7 114 89.5
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 2.3e-60 235.3 114 91.2
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 3.0e-60 235.0 114 90.4
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 3.9e-60 234.6 114 88.6
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 3.9e-60 234.6 114 89.5
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 3.9e-60 234.6 114 89.5
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 5.1e-60 234.2 114 89.5
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 5.1e-60 234.2 114 89.5
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 6.7e-60 233.8 114 88.6
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 6.7e-60 233.8 114 89.5
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 6.7e-60 233.8 114 89.5
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 6.7e-60 233.8 114 89.5
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 6.7e-60 233.8 114 89.5
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 6.7e-60 233.8 114 89.5
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 1.1e-59 233.0 114 89.5
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 1.1e-59 233.0 114 90.4
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 1.5e-59 232.6 114 89.5
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 1.5e-59 232.6 114 86.8
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 2.5e-59 231.9 114 86.0
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 3.3e-59 231.5 114 88.6
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 3.3e-59 231.5 114 88.6
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 4.3e-59 231.1 114 86.0
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 5.6e-59 230.7 114 85.1
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 5.6e-59 230.7 114 86.0
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 5.6e-59 230.7 114 86.0
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 7.4e-59 230.3 114 86.8
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 7.4e-59 230.3 114 85.1
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 9.6e-59 229.9 114 86.0
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 9.6e-59 229.9 114 86.0
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 9.6e-59 229.9 114 86.0
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 1.3e-58 229.6 114 86.8
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 1.3e-58 229.6 114 86.0
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 1.3e-58 229.6 114 87.7
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 1.6e-58 229.2 114 86.0
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 1.6e-58 229.2 114 86.0
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 1.6e-58 229.2 114 86.0
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 1.6e-58 229.2 114 86.0
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 1.6e-58 229.2 114 87.7
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 2.1e-58 228.8 114 86.8
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 2.1e-58 228.8 114 86.8
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 2.1e-58 228.8 114 87.7
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 4.8e-58 227.6 114 85.1
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 4.8e-58 227.6 114 85.1
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 4.8e-58 227.6 114 85.1
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 6.2e-58 227.3 114 87.7
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 1.8e-57 225.7 114 84.2
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 3.1e-57 224.9 134 76.9
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 4.0e-57 224.6 114 85.1
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 9.0e-57 223.4 114 85.1
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 9.0e-57 223.4 114 82.5
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 1.2e-56 223.0 111 89.2
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 1.2e-56 223.0 111 89.2
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 1.5e-56 222.6 114 84.2
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 2.0e-56 222.2 133 76.7
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.0e-55 219.9 114 85.1
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 4.9e-55 217.6 104 91.3
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 3.2e-54 214.9 104 89.4
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 4.2e-54 214.5 114 81.6
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 4.2e-54 214.5 104 89.4
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.7e-53 211.8 114 79.8
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 4.6e-53 211.1 112 80.4
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 4.6e-53 211.1 112 80.4
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 1.8e-52 209.1 114 79.8
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.3e-52 208.8 104 89.4
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 6.7e-52 207.2 104 84.6
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 1.1e-51 206.5 104 84.6
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 3.3e-51 204.9 104 83.7
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 5.7e-51 204.1 111 79.3
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 9.7e-51 203.4 114 80.7
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 1.6e-50 202.6 111 77.5
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 2.2e-50 202.2 111 77.5
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 2.2e-50 202.2 111 77.5
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 2.2e-50 202.2 127 74.0
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 2.4e-49 198.7 114 71.1
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.2e-48 196.4 116 74.1
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 2.0e-48 195.7 114 72.8
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 7.7e-48 193.7 98 87.8
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 7.7e-48 193.7 115 70.4
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.9e-47 191.8 116 72.4
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 1.1e-46 189.9 114 68.4
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 1.4e-46 189.5 129 66.7
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.4e-44 183.0 115 69.6
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 8.8e-44 180.3 88 92.0
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 2.0e-43 179.1 114 65.8
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 5.7e-43 177.6 114 71.9
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 1.4e-41 172.9 179 51.4
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 9.1e-41 170.2 88 86.4
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 1.5e-40 169.5 114 70.2
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 4.5e-40 167.9 114 57.9
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 5.9e-40 167.5 79 89.9
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 7.7e-40 167.2 92 79.3
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 2.2e-39 165.6 79 89.9
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 3.8e-39 164.9 88 80.7
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 1.1e-38 163.3 89 80.9
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 1.1e-38 163.3 83 86.7
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.4e-38 162.9 81 85.2
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 1.9e-38 162.5 79 87.3
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 2.1e-37 159.1 79 86.1
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 2.1e-37 159.1 80 83.8
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 2.7e-37 158.7 93 77.4
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 1.0e-36 156.8 80 85.0
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 2.3e-36 155.6 77 92.2
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 3.0e-36 155.2 79 82.3
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 1.1e-35 153.3 79 84.8
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 3.3e-35 151.8 83 79.5
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 4.4e-35 151.4 80 83.8
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 1.1e-30 136.7 111 54.1
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 1.5e-30 136.3 110 52.7
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 4.8e-26 121.3 64 87.5
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 2.0e-24 115.9 61 80.3
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 5.0e-23 111.3 114 47.4
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 8.5e-23 110.5 97 48.5
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 7.2e-22 107.5 56 83.9
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 4.7e-21 104.8 73 65.8
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 6.1e-21 104.4 113 44.2
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 4.0e-20 101.7 54 88.9
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 2.6e-19 99.0 114 47.4
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 1.1e-17 93.6 48 83.3
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.2e-16 90.1 119 37.8
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 2.0e-16 89.4 54 74.1
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 4.5e-16 88.2 64 54.7
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 1.8e-12 76.3 105 39.0
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 6.8e-12 74.3 104 36.5
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.8e-10 68.9 62 58.1
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 2.7e-08 62.4 117 29.1
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 3.5e-08 62.0 115 27.8
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 4.5e-08 61.6 114 31.6
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 5.9e-08 61.2 114 33.3
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 1.7e-07 59.7 117 29.1
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 5.0e-07 58.2 120 29.2
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 8.6e-07 57.4 116 31.0
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 1.1e-06 57.0 114 28.1
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 2.5e-06 55.8 115 29.6
Mapoly0122s0031 Marchantia polymorpha HOM05D004365 ORTHO05D253640 4.2e-06 55.1 88 35.2


User provided reference genes

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