Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO172G0113 Selaginella moellendorffii HOM05D006172 ORTHO05D005515 3.1e-133 478.4 231 100.0
AagrBONN_evm.TU.Sc2ySwM_362.1356 Anthoceros agrestis HOM05D006172 ORTHO05D005515 1.7e-94 349.7 229 66.4
Thecc.06G220200 Theobroma cacao HOM05D006172 ORTHO05D005515 1.4e-88 330.1 229 64.2
TAR626G1786 Trochodendron aralioides HOM05D006172 ORTHO05D005515 3.0e-88 328.9 229 62.9
Gorai.009G178500 Gossypium raimondii HOM05D006172 ORTHO05D005515 4.0e-88 328.6 229 65.1
MD10G1321300 Malus domestica HOM05D006172 ORTHO05D005515 4.0e-88 328.6 229 62.4
CDE11G0909 Ceratophyllum demersum HOM05D006172 ORTHO05D005515 5.2e-88 328.2 229 62.9
CsaV3_6G049060 Cucumis sativus L. HOM05D006172 ORTHO05D005515 6.8e-88 327.8 229 63.8
HanXRQChr05g0129541 Helianthus annuus HOM05D006172 ORTHO05D005515 8.8e-88 327.4 229 62.9
HanXRQChr05g0129551 Helianthus annuus HOM05D006172 ORTHO05D005515 8.8e-88 327.4 229 62.9
Peaxi162Scf00627g00035 Petunia axillaris HOM05D006172 ORTHO05D005515 8.8e-88 327.4 229 63.3
DCAR_028182 Daucus carota HOM05D006172 ORTHO05D005515 1.2e-87 327.0 229 62.4
THA.LOC104813121 Tarenaya hassleriana HOM05D006172 ORTHO05D005515 3.4e-87 325.5 229 61.1
ECA236G0092 Erigeron canadensis HOM05D006172 ORTHO05D005515 4.4e-87 325.1 230 62.2
Nitab4.5_0006322g0020 Nicotiana tabacum HOM05D006172 ORTHO05D005515 4.4e-87 325.1 229 62.9
PGSC0003DMG400023367 Solanum tuberosum HOM05D006172 ORTHO05D005515 4.4e-87 325.1 229 63.3
SGA_v2.0_scaffold4G01916 Striga asiatica HOM05D006172 ORTHO05D005515 4.4e-87 325.1 229 62.9
Gohir.D05G173300 Gossypium hirsutum HOM05D006172 ORTHO05D005515 5.7e-87 324.7 229 64.2
RcHm_v2.0_Chr5g0003171 Rosa chinensis HOM05D006172 ORTHO05D005515 5.7e-87 324.7 229 62.9
COL.COLO4_31773 Corchorus olitorius HOM05D006172 ORTHO05D005515 7.5e-87 324.3 229 63.8
TWI38G1682 Tripterygium wilfordii HOM05D006172 ORTHO05D005515 7.5e-87 324.3 229 64.2
Ca_21083_v3 Cicer arietinum L. HOM05D006172 ORTHO05D005515 9.8e-87 323.9 229 64.2
Potri.004G015200 Populus trichocarpa HOM05D006172 ORTHO05D005515 1.7e-86 323.2 229 62.9
Sopen05g034060 Solanum pennellii HOM05D006172 ORTHO05D005515 1.7e-86 323.2 229 62.4
ClCG01G022000 Citrullus lanatus HOM05D006172 ORTHO05D005515 2.2e-86 322.8 229 62.9
GSVIVG01012726001 Vitis vinifera HOM05D006172 ORTHO05D005515 2.2e-86 322.8 229 64.6
Lsat_1_v5_gn_7_15980 Lactuca sativa HOM05D006172 ORTHO05D005515 2.8e-86 322.4 229 61.6
Oeu013636.1 Olea europaea HOM05D006172 ORTHO05D005515 2.8e-86 322.4 229 61.6
Sc05g0009220 Simmondsia chinensis HOM05D006172 ORTHO05D005515 2.8e-86 322.4 230 61.7
VMungo1215G3219 Vigna mungo HOM05D006172 ORTHO05D005515 2.8e-86 322.4 229 61.6
MELO3C007389.2 Cucumis melo HOM05D006172 ORTHO05D005515 3.7e-86 322.0 228 64.0
Medtr4g132120 Medicago truncatula HOM05D006172 ORTHO05D005515 3.7e-86 322.0 229 63.8
Sc05g0009930 Simmondsia chinensis HOM05D006172 ORTHO05D005515 3.7e-86 322.0 230 61.3
Dinv13892 Davidia involucrata HOM05D006172 ORTHO05D005515 4.8e-86 321.6 229 62.9
Solyc05g055610.4 Solanum lycopersicum HOM05D006172 ORTHO05D005515 6.3e-86 321.2 229 62.0
QL05p073195 Quercus lobata HOM05D006172 ORTHO05D005515 8.3e-86 320.9 229 61.6
Aqoxy1G02151 Aquilegia oxysepala HOM05D006172 ORTHO05D005515 1.1e-85 320.5 229 62.0
Nn1g07129 Nelumbo nucifera HOM05D006172 ORTHO05D005515 1.4e-85 320.1 229 61.6
Phvul.003G078700 Phaseolus vulgaris HOM05D006172 ORTHO05D005515 1.4e-85 320.1 229 61.6
Glyma.07G260400 Glycine max HOM05D006172 ORTHO05D005515 1.8e-85 319.7 229 60.7
Lj4g0023330 Lotus japonicus HOM05D006172 ORTHO05D005515 1.8e-85 319.7 229 61.6
vmacro03686 Vaccinium macrocarpon HOM05D006172 ORTHO05D005515 1.8e-85 319.7 229 62.4
Eucgr.E04055 Eucalyptus grandis HOM05D006172 ORTHO05D005515 2.4e-85 319.3 229 60.3
Sabra04G0007400 Salix brachista HOM05D006172 ORTHO05D005515 2.4e-85 319.3 229 62.4
CSS0038964 Camellia sinensis var. sinensis HOM05D006172 ORTHO05D005515 3.1e-85 318.9 229 62.9
CSS0050420 Camellia sinensis var. sinensis HOM05D006172 ORTHO05D005515 3.1e-85 318.9 229 62.9
FAN25G0496 Fragaria x ananassa HOM05D006172 ORTHO05D005515 4.1e-85 318.5 229 61.6
PGR042G0524 Punica granatum HOM05D006172 ORTHO05D005515 4.1e-85 318.5 229 62.0
SEGI_01208 Sequoiadendron giganteum HOM05D006172 ORTHO05D005515 4.1e-85 318.5 229 61.1
CANSAT56G2229 Cannabis sativa HOM05D006172 ORTHO05D005515 5.4e-85 318.2 229 61.1
Duzib192G0085 Durio zibethinus HOM05D006172 ORTHO05D005515 5.4e-85 318.2 229 62.9
Migut.M01317 Erythranthe guttata HOM05D006172 ORTHO05D005515 5.4e-85 318.2 229 60.7
Pp3c9_15020 Physcomitrium patens HOM05D006172 ORTHO05D005515 5.4e-85 318.2 233 61.8
Sed0002789 Sechium edule HOM05D006172 ORTHO05D005515 5.4e-85 318.2 229 61.1
Ah.09g234910 Amaranthus hybridus HOM05D006172 ORTHO05D005515 7.0e-85 317.8 229 62.0
Cc09_g01690 Coffea canephora HOM05D006172 ORTHO05D005515 7.0e-85 317.8 229 61.1
FvH4_3g02080 Fragaria vesca HOM05D006172 ORTHO05D005515 7.0e-85 317.8 229 61.1
FAN21G3941 Fragaria x ananassa HOM05D006172 ORTHO05D005515 7.0e-85 317.8 229 61.1
Manes.16G007200 Manihot esculenta HOM05D006172 ORTHO05D005515 9.1e-85 317.4 229 62.9
CAN.G694.35 Capsicum annuum HOM05D006172 ORTHO05D005515 1.6e-84 316.6 229 61.1
Prupe.4G021000 Prunus persica HOM05D006172 ORTHO05D005515 1.6e-84 316.6 229 60.7
AT4G04670 Arabidopsis thaliana HOM05D006172 ORTHO05D005515 2.0e-84 316.2 229 59.8
arahy.Tifrunner.gnm1.ann1.GS5NL2 Arachis hypogaea HOM05D006172 ORTHO05D005515 2.0e-84 316.2 229 61.6
Lalb_Chr13g0304211 Lupinus albus HOM05D006172 ORTHO05D005515 2.0e-84 316.2 229 61.1
PSO675G8381 Papaver somniferum HOM05D006172 ORTHO05D005515 2.0e-84 316.2 230 60.4
Thhalv10028391m.g Eutrema salsugineum HOM05D006172 ORTHO05D005515 2.7e-84 315.8 229 60.3
Aa31LG9G9740 Aethionema arabicum HOM05D006172 ORTHO05D005515 3.5e-84 315.5 229 59.0
ATR0794G123 Amborella trichopoda HOM05D006172 ORTHO05D005515 4.5e-84 315.1 229 60.7
CiPaw.09G091900 Carya illinoinensis HOM05D006172 ORTHO05D005515 4.5e-84 315.1 229 62.4
Lj1A1230T62 Lonicera japonica HOM05D006172 ORTHO05D005515 4.5e-84 315.1 228 61.0
Rhsim13G0154200 Rhododendron simsii HOM05D006172 ORTHO05D005515 4.5e-84 315.1 229 61.1
arahy.Tifrunner.gnm1.ann1.3R4FRS Arachis hypogaea HOM05D006172 ORTHO05D005515 5.9e-84 314.7 229 61.6
BcaB01g02576 Brassica carinata HOM05D006172 ORTHO05D005515 5.9e-84 314.7 229 59.8
AUR62012709 Chenopodium quinoa HOM05D006172 ORTHO05D005515 5.9e-84 314.7 229 61.1
AUR62021945 Chenopodium quinoa HOM05D006172 ORTHO05D005515 5.9e-84 314.7 229 61.1
Carub.0006s3250 Capsella rubella HOM05D006172 ORTHO05D005515 7.7e-84 314.3 229 59.8
AL6G48130 Arabidopsis lyrata HOM05D006172 ORTHO05D005515 1.3e-83 313.5 229 59.4
PSO541G4594 Papaver somniferum HOM05D006172 ORTHO05D005515 2.3e-83 312.8 230 59.6
Sp6g04230 Schrenkiella parvula HOM05D006172 ORTHO05D005515 2.3e-83 312.8 229 59.0
Hund21409 Selenicereus undatus HOM05D006172 ORTHO05D005515 2.3e-83 312.8 229 61.6
CARHR252870 Cardamine hirsuta HOM05D006172 ORTHO05D005515 5.0e-83 311.6 229 58.5
Zm00001eb322630 Zea mays HOM05D006172 ORTHO05D005515 1.1e-82 310.5 229 59.8
Atru.chr10.2219 Acer truncatum HOM05D006172 ORTHO05D005515 1.5e-82 310.1 229 59.8
C03p36400 Brassica napus HOM05D006172 ORTHO05D005515 3.3e-82 308.9 230 59.1
BolC3t15953H Brassica oleracea HOM05D006172 ORTHO05D005515 3.3e-82 308.9 230 59.1
A03p30170 Brassica napus HOM05D006172 ORTHO05D005515 5.5e-82 308.1 230 58.7
BraA03t12201Z Brassica rapa HOM05D006172 ORTHO05D005515 5.5e-82 308.1 230 58.7
Mapoly0137s0034 Marchantia polymorpha HOM05D006172 ORTHO05D005515 5.5e-82 308.1 229 61.1
Gohir.A05G170200 Gossypium hirsutum HOM05D006172 ORTHO05D005515 9.5e-82 307.4 250 58.4
HPP92_012401 Vanilla planifolia HOM05D006172 ORTHO05D005515 6.8e-80 301.2 229 56.8
Cpa.g.sc152.15 Carica papaya HOM05D006172 ORTHO05D005515 1.5e-79 300.1 210 64.3
EL10Ac8g20057 Beta vulgaris HOM05D006172 ORTHO05D005515 1.3e-78 297.0 214 63.6
SHI02198 Sapria himalayana HOM05D006172 ORTHO05D005515 1.4e-77 293.5 229 58.1
Psat4g006680 Pisum sativum HOM05D006172 ORTHO05D005515 1.1e-74 283.9 193 66.3
Haze_06799 Corylus avellana HOM05D006172 ORTHO05D005515 2.3e-72 276.2 193 63.2
CBR_g48263 Chara braunii HOM05D006172 ORTHO05D005515 1.2e-71 273.9 230 56.5
MBI02_g46431_MAGBIO Magnolia biondii HOM05D006172 ORTHO05D005515 4.4e-71 271.9 193 61.7
unitig_37.g12153 Utricularia gibba HOM05D006172 ORTHO05D005515 9.5e-66 254.2 229 51.5
Ciclev10018338m.g Citrus clementina HOM05D006172 ORTHO05D005515 1.0e-59 234.2 229 48.5
MBI02_g21855_MAGBIO Magnolia biondii HOM05D006172 ORTHO05D005515 1.7e-59 233.4 169 58.6
Nitab4.5_0000096g0040 Nicotiana tabacum HOM05D006172 ORTHO05D005515 3.6e-57 225.7 192 55.7
Cre14.g626634 Chlamydomonas reinhardtii HOM05D006172 ORTHO05D005515 3.2e-53 212.6 312 41.7
MCO05G475 Micromonas commoda HOM05D006172 ORTHO05D005515 3.2e-53 212.6 232 49.1
PRCOL_00000475 Prasinoderma coloniale HOM05D006172 ORTHO05D005515 4.1e-53 212.2 245 43.3
Oeu014516.1 Olea europaea HOM05D006172 ORTHO05D005515 1.2e-52 210.7 147 64.6
TPR.G20315 Trifolium pratense HOM05D006172 ORTHO05D005515 5.6e-34 148.7 101 67.3
TPR.G37083 Trifolium pratense HOM05D006172 ORTHO05D005515 2.2e-14 83.6 61 62.3
EL10Ac4g08040 Beta vulgaris HOM05D002586 ORTHO05D007009 2.0e-07 60.5 146 30.8
Sopen12g001260 Solanum pennellii HOM05D002586 ORTHO05D007009 7.7e-07 58.5 146 28.8
Cc05_g12810 Coffea canephora HOM05D002586 ORTHO05D007009 1.3e-06 57.8 144 29.9
HanXRQChr11g0331971 Helianthus annuus HOM05D002586 ORTHO05D007009 1.3e-06 57.8 112 32.1
Peaxi162Scf00000g00783 Petunia axillaris HOM05D002586 ORTHO05D007009 1.3e-06 57.8 117 31.6
Solyc12g005280.3 Solanum lycopersicum HOM05D002586 ORTHO05D007009 1.3e-06 57.8 129 29.5
PGSC0003DMG400021815 Solanum tuberosum HOM05D002586 ORTHO05D007009 1.3e-06 57.8 129 29.5
Dinv08360 Davidia involucrata HOM05D002586 ORTHO05D007009 2.2e-06 57.0 97 36.1
ECA236G1774 Erigeron canadensis HOM05D002586 ORTHO05D007009 2.2e-06 57.0 112 33.0
Aqoxy1G03945 Aquilegia oxysepala HOM05D002586 ORTHO05D007009 2.9e-06 56.6 93 33.3
MSTRG.6857 Avicennia marina HOM05D002586 ORTHO05D007009 2.9e-06 56.6 114 32.5
CsaV3_3G044270 Cucumis sativus L. HOM05D002586 ORTHO05D007009 2.9e-06 56.6 128 32.0
Actinidia35288 Actinidia chinensis HOM05D002586 ORTHO05D007009 3.8e-06 56.2 97 37.1
MELO3C018180.2 Cucumis melo HOM05D002586 ORTHO05D007009 3.8e-06 56.2 129 30.2
FvH4_3g21210 Fragaria vesca HOM05D002586 ORTHO05D007009 3.8e-06 56.2 129 30.2
FAN11G1488 Fragaria x ananassa HOM05D002586 ORTHO05D007009 3.8e-06 56.2 129 30.2
FAN21G1241 Fragaria x ananassa HOM05D002586 ORTHO05D007009 3.8e-06 56.2 114 32.5
CDE02G1138 Ceratophyllum demersum HOM05D002586 ORTHO05D007009 5.0e-06 55.8 114 31.6
AUR62041166 Chenopodium quinoa HOM05D002586 ORTHO05D007009 5.0e-06 55.8 146 28.8
Sed0008369 Sechium edule HOM05D002586 ORTHO05D007009 5.0e-06 55.8 129 31.8
CAN.G1181.9 Capsicum annuum HOM05D002586 ORTHO05D007009 6.5e-06 55.5 129 30.2
FAN16G1115 Fragaria x ananassa HOM05D002586 ORTHO05D007009 6.5e-06 55.5 114 31.6
AUR62029292 Chenopodium quinoa HOM05D002586 ORTHO05D007009 8.5e-06 55.1 146 28.8
Sc07g0002680 Simmondsia chinensis HOM05D002586 ORTHO05D007009 8.5e-06 55.1 95 32.6


User provided reference genes

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