Gene: Solyc05g055610.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc05g055610.4
  • Transcript Identifier Solyc05g055610.4.1
  • Gene Type Coding gene
  • Location SL4.0ch05 : 64555572-64562151 : negative

Gene Family Information

  • ID HOM05D006172
  • #Genes/#Species 128/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc05g055610.4.1
  • uniprot A0A3Q7GLB0
  • gene_id Solyc05g055610

Descriptions

  • Description tRNA wybutosine-synthesizing protein 2/3/4 (AHRD V3.3 *** A0A2G2WUK7_CAPBA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008033
IEA
GOA DatabasetRNA processing
GO:0032259
IEA
GOA Databasemethylation
GO:0030488
IBA
GOA DatabasetRNA methylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0102522
IEA
GOA DatabasetRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0008168
IEA
GOA Databasemethyltransferase activity
GO:0008175
IBA
GOA DatabasetRNA methyltransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IBA
GOA Databasecytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029063 S-adenosyl-L-methionine-dependent methyltransferase
IPR030382 SAM-dependent methyltransferase TRM5/TYW2-type
IPR015915 Kelch-type beta propeller
IPR036602 tRNA wybutosine-synthesizing-like superfamily
IPR006652 Kelch repeat type 1
IPR003827 tRNA wybutosine-synthesizing protein
Mapman id Description
35.1 not assigned.annotated