Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0047 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 3.2e-87 325.1 170 100.0
SMO137G0368 Selaginella moellendorffii HOM05D027672 ORTHO05D005204 2.0e-49 199.5 132 76.5
SMO302G0053 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 8.6e-48 194.1 166 72.9
SMO202G0076 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 1.3e-43 180.3 112 83.9
SMO164G0205 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 6.8e-37 157.9 166 59.0
SMO364G0410 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 5.1e-32 141.7 146 49.3
Gohir.D12G200300 Gossypium hirsutum HOM05D004178 ORTHO05D005204 2.4e-26 122.9 129 43.4
Gorai.008G215500 Gossypium raimondii HOM05D004178 ORTHO05D005204 2.4e-26 122.9 129 43.4
Gohir.A12G197800 Gossypium hirsutum HOM05D004178 ORTHO05D005204 4.1e-26 122.1 129 43.4
Prupe.2G275800 Prunus persica HOM05D004178 ORTHO05D005204 5.4e-26 121.7 156 40.4
Thecc.03G153700 Theobroma cacao HOM05D004178 ORTHO05D005204 5.4e-26 121.7 143 41.3
Dinv06570 Davidia involucrata HOM05D004178 ORTHO05D005204 1.2e-25 120.6 151 40.4
COL.COLO4_14102 Corchorus olitorius HOM05D004178 ORTHO05D005204 6.0e-25 118.2 141 42.6
Oeu021706.1 Olea europaea HOM05D004178 ORTHO05D005204 6.0e-25 118.2 140 42.9
TPR.G2991 Trifolium pratense HOM05D004178 ORTHO05D005204 6.0e-25 118.2 149 39.6
GSVIVG01013865001 Vitis vinifera HOM05D004178 ORTHO05D005204 6.0e-25 118.2 144 43.1
Zm00001eb309160 Zea mays HOM05D004178 ORTHO05D005204 6.0e-25 118.2 146 40.4
Cc02_g04400 Coffea canephora HOM05D004178 ORTHO05D005204 7.8e-25 117.9 151 38.4
Aa31LG11G1940 Aethionema arabicum HOM05D004178 ORTHO05D005204 1.0e-24 117.5 143 40.6
Manes.06G133600 Manihot esculenta HOM05D004178 ORTHO05D005204 1.7e-24 116.7 155 38.1
Sopen05g030150 Solanum pennellii HOM05D004178 ORTHO05D005204 1.7e-24 116.7 140 42.9
Eucgr.A02900 Eucalyptus grandis HOM05D004178 ORTHO05D005204 2.3e-24 116.3 141 41.1
FvH4_7g27291 Fragaria vesca HOM05D004178 ORTHO05D005204 2.3e-24 116.3 145 40.7
FAN06G2180 Fragaria x ananassa HOM05D004178 ORTHO05D005204 2.3e-24 116.3 145 40.7
Medtr4g061050 Medicago truncatula HOM05D004178 ORTHO05D005204 2.3e-24 116.3 156 38.5
Nn6g33950 Nelumbo nucifera HOM05D004178 ORTHO05D005204 2.3e-24 116.3 151 37.7
RcHm_v2.0_Chr1g0374131 Rosa chinensis HOM05D004178 ORTHO05D005204 2.3e-24 116.3 145 40.0
Atru.chr1.752 Acer truncatum HOM05D004178 ORTHO05D005204 3.0e-24 115.9 160 38.8
FAN06G0596 Fragaria x ananassa HOM05D004178 ORTHO05D005204 3.0e-24 115.9 145 40.0
PGSC0003DMG400014287 Solanum tuberosum HOM05D004178 ORTHO05D005204 3.0e-24 115.9 140 42.1
TAR375G0252 Trochodendron aralioides HOM05D004178 ORTHO05D005204 3.0e-24 115.9 143 40.6
Duzib084G0917 Durio zibethinus HOM05D004178 ORTHO05D005204 3.9e-24 115.5 143 39.2
Solyc05g051680.4 Solanum lycopersicum HOM05D004178 ORTHO05D005204 3.9e-24 115.5 140 42.9
CSS0036077 Camellia sinensis var. sinensis HOM05D004178 ORTHO05D005204 5.1e-24 115.2 141 39.7
Phvul.011G007300 Phaseolus vulgaris HOM05D004178 ORTHO05D005204 5.1e-24 115.2 149 37.6
Potri.003G107700 Populus trichocarpa HOM05D004178 ORTHO05D005204 5.1e-24 115.2 144 41.7
VMungo1127G0288 Vigna mungo HOM05D004178 ORTHO05D005204 5.1e-24 115.2 156 37.8
AL8G38150 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 6.6e-24 114.8 143 37.8
BcaC06g33236 Brassica carinata HOM05D004178 ORTHO05D005204 6.6e-24 114.8 143 38.5
A03p47060 Brassica napus HOM05D004178 ORTHO05D005204 6.6e-24 114.8 143 38.5
C07p45140 Brassica napus HOM05D004178 ORTHO05D005204 6.6e-24 114.8 143 38.5
BolC7t45036H Brassica oleracea HOM05D004178 ORTHO05D005204 6.6e-24 114.8 143 38.5
BraA03t13829Z Brassica rapa HOM05D004178 ORTHO05D005204 6.6e-24 114.8 143 38.5
CiPaw.03G020700 Carya illinoinensis HOM05D004178 ORTHO05D005204 6.6e-24 114.8 151 38.4
FAN01G0652 Fragaria x ananassa HOM05D004178 ORTHO05D005204 6.6e-24 114.8 145 40.0
FAN10G0409 Fragaria x ananassa HOM05D004178 ORTHO05D005204 6.6e-24 114.8 145 40.0
TPR.G3678 Trifolium pratense HOM05D004178 ORTHO05D005204 6.6e-24 114.8 139 41.0
unitig_37.g12493 Utricularia gibba HOM05D004178 ORTHO05D005204 6.6e-24 114.8 138 42.8
BcaC06g33151 Brassica carinata HOM05D004178 ORTHO05D005204 8.6e-24 114.4 143 37.8
HPP92_027283 Vanilla planifolia HOM05D004178 ORTHO05D005204 8.6e-24 114.4 141 39.0
PSO782G3243 Papaver somniferum HOM05D004178 ORTHO05D005204 1.1e-23 114.0 143 37.8
Psat7g194520 Pisum sativum HOM05D004178 ORTHO05D005204 1.1e-23 114.0 139 41.0
Sp2g24660 Schrenkiella parvula HOM05D004178 ORTHO05D005204 1.1e-23 114.0 143 37.8
Ciclev10004204m.g Citrus clementina HOM05D004178 ORTHO05D005204 1.5e-23 113.6 143 39.9
CsaV3_4G004020 Cucumis sativus L. HOM05D004178 ORTHO05D005204 1.5e-23 113.6 146 40.4
MD07G1252300 Malus domestica HOM05D004178 ORTHO05D005204 1.5e-23 113.6 141 39.0
AT5G61460 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 1.9e-23 113.2 143 37.8
MSTRG.8830 Avicennia marina HOM05D004178 ORTHO05D005204 1.9e-23 113.2 138 39.9
Migut.F00486 Erythranthe guttata HOM05D004178 ORTHO05D005204 1.9e-23 113.2 150 40.0
Carub.0008s2215 Capsella rubella HOM05D004178 ORTHO05D005204 2.5e-23 112.8 141 37.6
Thhalv10003566m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 2.5e-23 112.8 143 37.8
Cfa008151 Carpinus fangiana HOM05D004178 ORTHO05D005204 3.3e-23 112.5 151 37.7
Lj3g0020737 Lotus japonicus HOM05D004178 ORTHO05D005204 3.3e-23 112.5 143 39.9
QL09p005323 Quercus lobata HOM05D004178 ORTHO05D005204 3.3e-23 112.5 151 37.7
CAN.G515.9 Capsicum annuum HOM05D004178 ORTHO05D005204 4.3e-23 112.1 143 42.7
CDE11G0310 Ceratophyllum demersum HOM05D004178 ORTHO05D005204 5.6e-23 111.7 155 36.8
Medtr4g036760 Medicago truncatula HOM05D004178 ORTHO05D005204 5.6e-23 111.7 143 39.9
Nitab4.5_0003647g0020 Nicotiana tabacum HOM05D004178 ORTHO05D005204 5.6e-23 111.7 140 41.4
CANSAT56G2947 Cannabis sativa HOM05D004178 ORTHO05D005204 7.3e-23 111.3 160 36.2
Ca_30729_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 7.3e-23 111.3 139 41.0
AT5G07660 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 9.6e-23 110.9 141 38.3
Nitab4.5_0000818g0230 Nicotiana tabacum HOM05D004178 ORTHO05D005204 9.6e-23 110.9 140 40.7
ClCG07G016820 Citrullus lanatus HOM05D004178 ORTHO05D005204 1.2e-22 110.5 143 38.5
Ah.07g207660 Amaranthus hybridus HOM05D004178 ORTHO05D005204 1.6e-22 110.2 132 40.9
arahy.Tifrunner.gnm1.ann1.2YP1UN Arachis hypogaea HOM05D004178 ORTHO05D005204 1.6e-22 110.2 152 37.5
arahy.Tifrunner.gnm1.ann1.D3FWW6 Arachis hypogaea HOM05D004178 ORTHO05D005204 2.8e-22 109.4 145 37.9
Lsat_1_v5_gn_9_51940 Lactuca sativa HOM05D004178 ORTHO05D005204 2.8e-22 109.4 146 34.9
Glyma.09G229900 Glycine max HOM05D004178 ORTHO05D005204 3.6e-22 109.0 149 37.6
Peaxi162Scf00167g00610 Petunia axillaris HOM05D004178 ORTHO05D005204 3.6e-22 109.0 140 40.0
Sabra03G0074500 Salix brachista HOM05D004178 ORTHO05D005204 4.7e-22 108.6 144 39.6
EL10Ac3g05856 Beta vulgaris HOM05D004178 ORTHO05D005204 6.2e-22 108.2 132 40.2
CARHR275220 Cardamine hirsuta HOM05D004178 ORTHO05D005204 6.2e-22 108.2 143 37.1
ECA232G0935 Erigeron canadensis HOM05D004178 ORTHO05D005204 6.2e-22 108.2 139 35.3
Sed0013674 Sechium edule HOM05D004178 ORTHO05D005204 6.2e-22 108.2 143 38.5
HanXRQChr01g0028141 Helianthus annuus HOM05D004178 ORTHO05D005204 8.1e-22 107.8 143 37.8
SalBow5G4122 Salvia bowleyana HOM05D004178 ORTHO05D005204 1.1e-21 107.5 138 37.7
TWI14G1279 Tripterygium wilfordii HOM05D004178 ORTHO05D005204 1.1e-21 107.5 160 35.0
ATR0317G120 Amborella trichopoda HOM05D004178 ORTHO05D005204 1.4e-21 107.1 143 37.1
Rhsim03G0166000 Rhododendron simsii HOM05D004178 ORTHO05D005204 1.4e-21 107.1 151 38.4
Aqoxy5G03870 Aquilegia oxysepala HOM05D004178 ORTHO05D005204 2.4e-21 106.3 141 37.6
Actinidia13583 Actinidia chinensis HOM05D004178 ORTHO05D005204 3.1e-21 105.9 152 38.8
AL6G18000 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 3.1e-21 105.9 141 35.5
C02p03240 Brassica napus HOM05D004178 ORTHO05D005204 4.0e-21 105.5 144 37.5
PGR042G0822 Punica granatum HOM05D004178 ORTHO05D005204 5.2e-21 105.1 141 37.6
BraA02t04928Z Brassica rapa HOM05D004178 ORTHO05D005204 8.9e-21 104.4 144 36.8
PSO063G1916 Papaver somniferum HOM05D004178 ORTHO05D005204 8.9e-21 104.4 153 35.3
FAN03G3201 Fragaria x ananassa HOM05D004178 ORTHO05D005204 1.2e-20 104.0 145 38.6
Carub.0006s0663 Capsella rubella HOM05D004178 ORTHO05D005204 1.5e-20 103.6 141 36.2
Thhalv10012532m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 1.5e-20 103.6 143 35.0
BcaB05g21602 Brassica carinata HOM05D004178 ORTHO05D005204 2.0e-20 103.2 144 38.2
BcaNung06187 Brassica carinata HOM05D004178 ORTHO05D005204 2.0e-20 103.2 144 38.2
Pp3c11_11190 Physcomitrium patens HOM05D004178 ORTHO05D005204 2.0e-20 103.2 132 38.6
Cpa.g.sc1936.1 Carica papaya HOM05D004178 ORTHO05D005204 7.6e-20 101.3 125 40.0
Lj1C978G4 Lonicera japonica HOM05D004178 ORTHO05D005204 1.3e-19 100.5 153 37.3
MELO3C017663.2 Cucumis melo HOM05D004178 ORTHO05D005204 3.8e-19 99.0 143 37.1
Mapoly0003s0057 Marchantia polymorpha HOM05D004178 ORTHO05D005204 6.4e-19 98.2 143 34.3
vmacro06815 Vaccinium macrocarpon HOM05D004178 ORTHO05D005204 6.4e-19 98.2 141 38.3
Lalb_Chr19g0140351 Lupinus albus HOM05D004178 ORTHO05D005204 1.9e-18 96.7 161 34.8
AUR62002220 Chenopodium quinoa HOM05D004178 ORTHO05D005204 5.4e-18 95.1 141 38.3
AUR62015432 Chenopodium quinoa HOM05D004178 ORTHO05D005204 9.3e-18 94.4 141 37.6
AagrBONN_evm.TU.Sc2ySwM_228.971 Anthoceros agrestis HOM05D004178 ORTHO05D005204 2.7e-17 92.8 129 34.1
SHI13977 Sapria himalayana HOM05D004178 ORTHO05D005204 2.7e-17 92.8 125 39.2
SGA_v2.0_scaffold2G01219 Striga asiatica HOM05D004178 ORTHO05D005204 7.8e-17 91.3 151 33.1
Haze_13892 Corylus avellana HOM05D004178 ORTHO05D005204 3.0e-16 89.4 169 32.5
MCO11G708 Micromonas commoda HOM05D004178 ORTHO05D005204 1.5e-15 87.0 148 33.1
AL1G57860 Arabidopsis lyrata HOM05D004178 ORTHO05D005039 5.6e-15 85.1 115 35.7
Psat3g047440 Pisum sativum HOM05D004178 ORTHO05D005204 1.3e-14 84.0 111 38.7
BolC2t06288H Brassica oleracea HOM05D004178 ORTHO05D005204 2.8e-14 82.8 85 48.2
Ah.02g120680 Amaranthus hybridus HOM05D004178 ORTHO05D005204 1.1e-13 80.9 105 41.0
DCAR_014619 Daucus carota HOM05D004178 ORTHO05D005204 1.1e-13 80.9 128 37.5
Sc19g0002080 Simmondsia chinensis HOM05D004178 ORTHO05D005204 6.9e-13 78.2 114 36.0
Glyma.12G006400 Glycine max HOM05D004178 ORTHO05D005204 2.6e-12 76.3 59 55.9
AUR62042657 Chenopodium quinoa HOM05D004178 ORTHO05D005204 1.9e-10 70.1 142 30.3
CBR_g34600 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-08 62.8 60 41.7
BcaC03g13191 Brassica carinata HOM05D004178 ORTHO05D005204 6.7e-08 61.6 127 33.1
Ca_02789_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 8.7e-08 61.2 43 62.8
Cfa025728 Carpinus fangiana HOM05D004178 ORTHO05D005204 2.8e-06 56.2 136 27.2
PRCOL_00006025 Prasinoderma coloniale HOM05D004178 ORTHO05D005204 4.8e-06 55.5 122 28.7


User provided reference genes

Program Settings