Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 0.0e+00 1290.4 623 100.0
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 0.0e+00 1157.9 636 89.8
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 6.4e-250 867.5 608 64.6
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 4.4e-243 844.7 632 64.2
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 2.1e-229 799.3 645 60.0
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 6.9e-228 794.3 620 61.8
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 7.6e-227 790.8 621 60.9
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 1.9e-225 786.2 617 61.1
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 2.1e-224 782.7 620 61.3
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 2.7e-224 782.3 620 61.1
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 3.5e-224 781.9 621 60.1
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 6.0e-224 781.2 621 60.5
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 1.8e-223 779.6 621 59.9
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 1.8e-223 779.6 620 60.8
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 1.5e-222 776.5 621 61.0
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.5e-222 776.5 621 60.1
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 1.6e-221 773.1 621 60.1
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 2.8e-221 772.3 621 60.2
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 4.8e-221 771.5 622 60.3
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 4.8e-221 771.5 622 59.5
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 6.2e-221 771.2 614 60.6
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 6.2e-221 771.2 633 59.7
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 6.2e-221 771.2 621 59.1
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 1.8e-220 769.6 617 60.5
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 1.8e-220 769.6 617 60.5
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 2.4e-220 769.2 620 59.7
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 4.0e-220 768.5 614 60.4
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 9.0e-220 767.3 627 60.0
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 9.0e-220 767.3 625 58.6
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 1.2e-219 766.9 623 60.0
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 2.0e-219 766.1 624 59.5
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 2.6e-219 765.8 601 61.1
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 3.4e-219 765.4 607 60.6
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 5.8e-219 764.6 621 60.2
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 1.3e-218 763.5 621 58.9
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 3.8e-218 761.9 621 59.7
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 3.8e-218 761.9 621 59.6
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.4e-217 760.0 640 57.8
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 3.2e-217 758.8 618 59.4
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 3.2e-217 758.8 616 59.4
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 5.5e-217 758.1 618 59.2
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 5.5e-217 758.1 609 59.9
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 5.5e-217 758.1 620 59.5
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 7.1e-217 757.7 621 59.1
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 9.3e-217 757.3 614 59.9
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 9.3e-217 757.3 620 59.5
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.6e-216 756.5 619 59.8
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 1.6e-216 756.5 633 58.1
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 1.6e-216 756.5 626 58.3
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 2.1e-216 756.1 622 59.3
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 3.5e-216 755.4 622 59.0
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 3.5e-216 755.4 622 59.0
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 3.5e-216 755.4 622 59.0
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 6.0e-216 754.6 632 58.2
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 7.9e-216 754.2 618 59.7
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 1.0e-215 753.8 621 58.5
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 1.0e-215 753.8 622 58.0
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 5.1e-215 751.5 622 58.7
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 1.5e-214 750.0 620 59.2
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.5e-214 750.0 622 57.4
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 1.5e-214 750.0 641 57.9
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 2.5e-214 749.2 622 58.8
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 7.4e-214 747.7 620 58.9
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 9.6e-214 747.3 619 59.1
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 9.6e-214 747.3 620 58.9
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 1.3e-213 746.9 620 58.2
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 1.6e-213 746.5 618 58.4
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 2.1e-213 746.1 620 58.7
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 3.7e-213 745.3 610 60.0
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 3.7e-213 745.3 610 59.8
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 3.7e-213 745.3 620 57.4
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 3.7e-213 745.3 622 58.2
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 1.4e-212 743.4 620 58.5
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 4.1e-212 741.9 647 56.0
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 5.3e-212 741.5 613 58.9
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 9.0e-212 740.7 614 59.1
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 9.0e-212 740.7 670 55.2
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.5e-211 740.0 617 57.2
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 1.3e-210 736.9 626 56.7
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 1.7e-210 736.5 656 55.5
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 1.7e-210 736.5 663 55.1
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 1.7e-210 736.5 590 60.0
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 1.4e-209 733.4 606 58.7
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 5.5e-209 731.5 614 58.1
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 1.2e-208 730.3 625 57.4
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 3.0e-207 725.7 619 57.8
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 3.9e-207 725.3 638 56.3
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 8.7e-207 724.2 564 61.7
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 2.8e-205 719.2 531 65.3
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 5.3e-204 714.9 613 56.6
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 3.4e-203 712.2 613 56.6
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 7.9e-200 701.0 625 55.7
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 7.9e-200 701.0 625 55.7
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 1.4e-199 700.3 584 57.7
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 3.9e-199 698.7 564 60.5
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 6.7e-199 698.0 607 56.2
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 2.8e-197 692.6 621 55.6
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 8.2e-197 691.0 605 55.5
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 3.1e-196 689.1 591 57.5
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 2.6e-195 686.0 619 54.4
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 8.8e-191 671.0 598 56.9
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.3e-190 669.1 621 54.6
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 9.7e-190 667.5 538 61.0
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.3e-186 657.1 607 54.7
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 5.0e-186 655.2 677 51.0
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 1.9e-185 653.3 704 49.0
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 7.2e-185 651.4 535 59.1
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 3.3e-182 642.5 617 53.6
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 4.4e-182 642.1 612 53.3
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.3e-181 640.6 616 52.6
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 4.2e-177 625.5 583 55.1
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 8.3e-173 611.3 654 49.8
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 3.6e-168 595.9 551 53.7
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 5.6e-161 572.0 506 54.9
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 9.5e-161 571.2 606 49.0
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 6.8e-159 565.1 423 63.4
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 6.8e-159 565.1 535 55.1
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 7.5e-158 561.6 429 62.2
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 2.9e-157 559.7 424 62.0
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 1.1e-156 557.8 660 46.1
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 1.8e-156 557.0 704 44.2
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 5.9e-155 552.0 424 60.8
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.9e-153 547.0 417 60.2
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 7.3e-153 545.0 423 60.3
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.7e-152 542.3 417 59.2
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 8.0e-152 541.6 604 47.2
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.3e-151 540.0 605 47.6
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 4.6e-147 525.8 383 64.8
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 2.3e-146 523.5 420 57.6
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 1.9e-145 520.4 430 57.7
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 4.7e-144 515.8 626 43.0
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 3.9e-138 496.1 606 44.6
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 5.4e-124 449.1 319 66.5
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 1.5e-121 441.0 613 40.3
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 1.3e-120 438.0 650 40.5
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 5.8e-118 429.1 419 50.6
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 6.7e-90 335.9 418 44.0
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 7.4e-81 305.8 318 49.7
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 2.6e-73 280.8 225 58.7
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 4.7e-59 233.4 157 70.7
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 5.7e-57 226.5 154 66.9
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 7.5e-57 226.1 157 68.2
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 7.5e-57 226.1 154 68.2
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 9.8e-57 225.7 155 69.7
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 1.1e-55 222.2 154 66.9
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 1.1e-55 222.2 154 67.5
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.8e-55 221.5 154 66.2
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 2.2e-48 198.0 135 68.1
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 3.7e-48 197.2 156 60.9
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 7.8e-46 189.5 132 62.9
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 3.3e-44 184.1 151 58.9
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.7e-37 161.8 126 61.9
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.9e-36 158.3 103 69.9
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 9.5e-36 156.0 110 69.1
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 2.3e-29 134.8 83 75.9
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 1.5e-28 132.1 101 60.4
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 2.3e-26 124.8 95 60.0
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 6.8e-26 123.2 79 70.9
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.5e-20 105.5 76 63.2
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 1.5e-20 105.5 84 58.3
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 4.7e-19 100.5 66 66.7
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 3.1e-18 97.8 111 40.5
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 1.2e-17 95.9 129 41.9
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 2.1e-14 85.1 85 50.6
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 9.6e-12 76.3 52 67.3
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.4e-10 71.6 50 60.0
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 3.4e-09 67.8 45 68.9
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 4.4e-09 67.4 38 76.3
Rhsim04G0099500 Rhododendron simsii HOM05D004736 ORTHO05D006424 7.1e-07 60.1 161 26.7
FAN23G0361 Fragaria x ananassa HOM05D002634 ORTHO05D003100 1.2e-06 59.3 374 22.7
Phvul.003G239000 Phaseolus vulgaris HOM05D002634 ORTHO05D003100 2.1e-06 58.5 348 20.1
HPP92_003386 Vanilla planifolia HOM05D004736 ORTHO05D006424 2.7e-06 58.2 105 30.5
HPP92_003388 Vanilla planifolia HOM05D004736 ORTHO05D006424 2.7e-06 58.2 105 30.5
ClCG10G017240 Citrullus lanatus HOM05D004736 ORTHO05D006424 3.5e-06 57.8 123 30.1
Glyma.17G165900 Glycine max HOM05D002634 ORTHO05D003100 4.6e-06 57.4 348 20.4
TPR.G3207 Trifolium pratense HOM05D002943 ORTHO05D002685 6.0e-06 57.0 99 35.4
Gohir.A01G196200 Gossypium hirsutum HOM05D004736 ORTHO05D006424 7.8e-06 56.6 105 29.5
Gohir.D01G186500 Gossypium hirsutum HOM05D004736 ORTHO05D006424 7.8e-06 56.6 105 29.5
Gorai.002G229900 Gossypium raimondii HOM05D004736 ORTHO05D006424 7.8e-06 56.6 105 29.5
Lsat_1_v5_gn_1_13520 Lactuca sativa HOM05D004736 ORTHO05D006424 7.8e-06 56.6 161 26.1


User provided reference genes

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