Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI49010 Sapria himalayana HOM05D005361 ORTHO05D006518 8.5e-128 460.3 225 100.0
SHI49398 Sapria himalayana HOM05D005361 ORTHO05D006518 8.5e-128 460.3 225 100.0
Nitab4.5_0006072g0040 Nicotiana tabacum HOM05D005361 ORTHO05D006518 1.3e-54 217.2 231 50.2
Actinidia35531 Actinidia chinensis HOM05D005361 ORTHO05D006518 4.8e-54 215.3 231 51.1
Ciclev10000759m.g Citrus clementina HOM05D005361 ORTHO05D006518 4.8e-54 215.3 213 52.1
Lj5C338G3 Lonicera japonica HOM05D005361 ORTHO05D006518 1.4e-53 213.8 193 56.0
TAR362G0767 Trochodendron aralioides HOM05D005361 ORTHO05D006518 1.4e-53 213.8 220 50.0
Atru.chr2.142 Acer truncatum HOM05D005361 ORTHO05D006518 2.4e-53 213.0 210 53.3
vmacro01549 Vaccinium macrocarpon HOM05D005361 ORTHO05D006518 3.1e-53 212.6 231 49.4
Potri.005G020000 Populus trichocarpa HOM05D005361 ORTHO05D006518 6.9e-53 211.5 231 49.4
Nitab4.5_0000368g0310 Nicotiana tabacum HOM05D005361 ORTHO05D006518 1.5e-52 210.3 231 49.4
CANSAT54G2643 Cannabis sativa HOM05D005361 ORTHO05D006518 4.5e-52 208.8 210 52.9
MD04G1195700 Malus domestica HOM05D005361 ORTHO05D006518 4.5e-52 208.8 211 50.7
Manes.08G112700 Manihot esculenta HOM05D005361 ORTHO05D006518 4.5e-52 208.8 210 53.3
Rhsim11G0093500 Rhododendron simsii HOM05D005361 ORTHO05D006518 4.5e-52 208.8 231 49.4
RcHm_v2.0_Chr3g0456811 Rosa chinensis HOM05D005361 ORTHO05D006518 4.5e-52 208.8 190 56.3
CSS0043675 Camellia sinensis var. sinensis HOM05D005361 ORTHO05D006518 7.6e-52 208.0 231 49.4
CAN.G1273.4 Capsicum annuum HOM05D005361 ORTHO05D006518 7.6e-52 208.0 231 48.9
Gohir.D13G114500 Gossypium hirsutum HOM05D005361 ORTHO05D006518 2.9e-51 206.1 209 53.1
MD12G1208000 Malus domestica HOM05D005361 ORTHO05D006518 6.4e-51 204.9 227 47.6
Gorai.013G128600 Gossypium raimondii HOM05D005361 ORTHO05D006518 1.1e-50 204.1 209 52.6
QL03p018132 Quercus lobata HOM05D005361 ORTHO05D006518 1.1e-50 204.1 213 49.8
Solyc01g100270.4 Solanum lycopersicum HOM05D005361 ORTHO05D006518 1.9e-50 203.4 215 49.3
PGSC0003DMG400002810 Solanum tuberosum HOM05D005361 ORTHO05D006518 1.9e-50 203.4 230 48.3
MBI18_g24951_MAGBIO Magnolia biondii HOM05D005361 ORTHO05D006518 2.4e-50 203.0 184 55.4
FAN05G4787 Fragaria x ananassa HOM05D005361 ORTHO05D006518 3.2e-50 202.6 213 51.2
Sopen01g043780 Solanum pennellii HOM05D005361 ORTHO05D006518 3.2e-50 202.6 215 49.8
CiPaw.08G157000 Carya illinoinensis HOM05D005361 ORTHO05D006518 4.2e-50 202.2 231 48.9
Thecc.05G320500 Theobroma cacao HOM05D005361 ORTHO05D006518 4.2e-50 202.2 191 53.9
TWI56G0631 Tripterygium wilfordii HOM05D005361 ORTHO05D006518 4.2e-50 202.2 195 52.8
GSVIVG01031212001 Vitis vinifera HOM05D005361 ORTHO05D006518 4.2e-50 202.2 206 51.5
CARHR289850 Cardamine hirsuta HOM05D005361 ORTHO05D006518 5.5e-50 201.8 191 52.9
MSTRG.27959 Avicennia marina HOM05D005361 ORTHO05D006518 7.1e-50 201.4 207 51.7
Prupe.6G315500 Prunus persica HOM05D005361 ORTHO05D006518 7.1e-50 201.4 211 49.3
Cpa.g.sc48.138 Carica papaya HOM05D005361 ORTHO05D006518 1.2e-49 200.7 211 51.7
Gohir.A13G111600 Gossypium hirsutum HOM05D005361 ORTHO05D006518 1.2e-49 200.7 229 48.0
AL1G65920 Arabidopsis lyrata HOM05D005361 ORTHO05D006518 1.6e-49 200.3 192 52.6
Duzib177G0912 Durio zibethinus HOM05D005361 ORTHO05D006518 1.6e-49 200.3 211 50.7
Thhalv10023373m.g Eutrema salsugineum HOM05D005361 ORTHO05D006518 2.1e-49 199.9 190 52.1
BcaB07g31118 Brassica carinata HOM05D005361 ORTHO05D006518 2.7e-49 199.5 210 50.0
Haze_04086 Corylus avellana HOM05D005361 ORTHO05D006518 2.7e-49 199.5 236 46.2
AT1G56310 Arabidopsis thaliana HOM05D005361 ORTHO05D006518 3.5e-49 199.1 192 53.1
BcaC04g22042 Brassica carinata HOM05D005361 ORTHO05D006518 3.5e-49 199.1 210 49.5
C09p24140 Brassica napus HOM05D005361 ORTHO05D006518 3.5e-49 199.1 210 49.5
BolC9t55332H Brassica oleracea HOM05D005361 ORTHO05D006518 3.5e-49 199.1 210 49.5
CiPaw.07G027300 Carya illinoinensis HOM05D005361 ORTHO05D006518 3.5e-49 199.1 204 52.0
Cc02_g34760 Coffea canephora HOM05D005361 ORTHO05D006518 4.6e-49 198.7 231 48.1
Lj9A208G25 Lonicera japonica HOM05D005361 ORTHO05D006518 7.9e-49 198.0 231 47.6
Dinv30866 Davidia involucrata HOM05D005361 ORTHO05D006518 1.0e-48 197.6 198 51.5
FvH4_6g07170 Fragaria vesca HOM05D005361 ORTHO05D006518 1.3e-48 197.2 209 49.8
FAN14G4398 Fragaria x ananassa HOM05D005361 ORTHO05D006518 1.3e-48 197.2 209 49.8
SGA_v2.0_scaffold80G25882 Striga asiatica HOM05D005361 ORTHO05D006518 1.3e-48 197.2 226 46.9
TPR.G2615 Trifolium pratense HOM05D005361 ORTHO05D006518 3.0e-48 196.1 208 51.9
SalBow3G1325 Salvia bowleyana HOM05D005361 ORTHO05D006518 1.1e-47 194.1 215 47.9
A09p19140 Brassica napus HOM05D005361 ORTHO05D006518 1.9e-47 193.4 210 48.1
BraA09t37532Z Brassica rapa HOM05D005361 ORTHO05D006518 1.9e-47 193.4 210 48.1
Carub.0002s0785 Capsella rubella HOM05D005361 ORTHO05D006518 1.9e-47 193.4 190 51.6
Migut.N02108 Erythranthe guttata HOM05D005361 ORTHO05D006518 1.9e-47 193.4 232 45.7
Glyma.10G148600 Glycine max HOM05D005361 ORTHO05D006518 1.9e-47 193.4 226 47.3
Ca_10160_v3 Cicer arietinum L. HOM05D005361 ORTHO05D006518 2.5e-47 193.0 188 52.1
ClCG03G017650 Citrullus lanatus HOM05D005361 ORTHO05D006518 3.3e-47 192.6 189 54.5
PSO357G0277 Papaver somniferum HOM05D005361 ORTHO05D006518 3.3e-47 192.6 188 51.6
Lsat_1_v5_gn_5_102760 Lactuca sativa HOM05D005361 ORTHO05D006518 5.6e-47 191.8 190 51.6
PSO170G3617 Papaver somniferum HOM05D005361 ORTHO05D006518 5.6e-47 191.8 188 51.1
Nn3g21622 Nelumbo nucifera HOM05D005361 ORTHO05D006518 7.4e-47 191.4 213 49.8
Psat0s1118g0080 Pisum sativum HOM05D005361 ORTHO05D006518 7.4e-47 191.4 209 50.2
arahy.Tifrunner.gnm1.ann1.1QQ1RG Arachis hypogaea HOM05D005361 ORTHO05D006518 1.3e-46 190.7 204 50.5
arahy.Tifrunner.gnm1.ann1.77BPS2 Arachis hypogaea HOM05D005361 ORTHO05D006518 1.3e-46 190.7 204 50.5
Glyma.20G239300 Glycine max HOM05D005361 ORTHO05D006518 2.1e-46 189.9 218 46.8
Os05g0357100 Oryza sativa ssp. japonica HOM05D005361 ORTHO05D006518 2.1e-46 189.9 207 47.8
Sp2g06550 Schrenkiella parvula HOM05D005361 ORTHO05D006518 2.1e-46 189.9 192 50.5
Ah.06g189010 Amaranthus hybridus HOM05D005361 ORTHO05D006518 2.8e-46 189.5 193 50.3
Oeu053699.1 Olea europaea HOM05D005361 ORTHO05D006518 2.8e-46 189.5 212 46.7
THA.LOC104805911 Tarenaya hassleriana HOM05D005361 ORTHO05D006518 2.8e-46 189.5 210 49.0
Lj5g0016289 Lotus japonicus HOM05D005361 ORTHO05D006518 3.7e-46 189.1 218 47.7
MELO3C015263.2 Cucumis melo HOM05D005361 ORTHO05D006518 4.8e-46 188.7 193 52.3
HanXRQChr10g0299251 Helianthus annuus HOM05D005361 ORTHO05D006518 6.2e-46 188.3 194 49.5
Hund07131 Selenicereus undatus HOM05D005361 ORTHO05D006518 6.2e-46 188.3 213 47.4
CsaV3_1G038340 Cucumis sativus L. HOM05D005361 ORTHO05D006518 1.1e-45 187.6 197 50.8
Sed0027360 Sechium edule HOM05D005361 ORTHO05D006518 1.1e-45 187.6 209 48.8
Lalb_Chr02g0147921 Lupinus albus HOM05D005361 ORTHO05D006518 2.4e-45 186.4 225 44.9
Phvul.007G200000 Phaseolus vulgaris HOM05D005361 ORTHO05D006518 3.1e-45 186.0 218 45.4
FAN04G2120 Fragaria x ananassa HOM05D005361 ORTHO05D006518 9.0e-45 184.5 190 49.5
FvH4_5g34880 Fragaria vesca HOM05D005361 ORTHO05D006518 1.5e-44 183.7 190 50.0
PGR083G2525 Punica granatum HOM05D005361 ORTHO05D006518 1.5e-44 183.7 199 48.7
RcHm_v2.0_Chr7g0235801 Rosa chinensis HOM05D005361 ORTHO05D006518 1.5e-44 183.7 189 49.7
ATR0706G045 Amborella trichopoda HOM05D005361 ORTHO05D006518 7.6e-44 181.4 210 47.6
Aa31LG2G11550 Aethionema arabicum HOM05D005361 ORTHO05D006518 1.0e-43 181.0 210 46.2
HPP92_001070 Vanilla planifolia HOM05D005361 ORTHO05D006518 1.7e-43 180.3 185 50.8
Aqoxy6G02436 Aquilegia oxysepala HOM05D005361 ORTHO05D006518 2.2e-43 179.9 192 48.4
ECA234G3067 Erigeron canadensis HOM05D005361 ORTHO05D006518 3.8e-43 179.1 194 48.5
FAN08G1915 Fragaria x ananassa HOM05D005361 ORTHO05D006518 3.8e-43 179.1 189 48.7
TAR365G0822 Trochodendron aralioides HOM05D005361 ORTHO05D006518 3.8e-43 179.1 210 47.6
FAN09G0306 Fragaria x ananassa HOM05D005361 ORTHO05D006518 8.4e-43 177.9 264 42.0
Migut.H01140 Erythranthe guttata HOM05D005361 ORTHO05D006518 2.5e-42 176.4 203 48.3
DCAR_005413 Daucus carota HOM05D005361 ORTHO05D006518 4.2e-42 175.6 211 46.0
Actinidia16846 Actinidia chinensis HOM05D005361 ORTHO05D006518 5.5e-42 175.3 176 55.1
Peaxi162Scf00673g00026 Petunia axillaris HOM05D005361 ORTHO05D006518 7.9e-41 171.4 231 43.3
Zm00001eb347420 Zea mays HOM05D005361 ORTHO05D006518 5.1e-40 168.7 205 44.9
Sabra05G0026100 Salix brachista HOM05D005361 ORTHO05D006518 3.7e-38 162.5 231 42.0
COL.COLO4_04134 Corchorus olitorius HOM05D005361 ORTHO05D006518 2.4e-37 159.8 229 42.4
VMungo0720G2281 Vigna mungo HOM05D005361 ORTHO05D006518 4.6e-33 145.6 218 40.4
AUR62000693 Chenopodium quinoa HOM05D005361 ORTHO05D006518 6.1e-33 145.2 190 43.7
AUR62005265 Chenopodium quinoa HOM05D005361 ORTHO05D006518 1.3e-32 144.1 193 42.5
SEGI_24449 Sequoiadendron giganteum HOM05D005361 ORTHO05D006518 4.3e-31 139.0 190 43.2
Sc09g0002730 Simmondsia chinensis HOM05D005361 ORTHO05D006518 2.2e-30 136.7 143 49.0
Mapoly0054s0112 Marchantia polymorpha HOM05D005361 ORTHO05D006518 2.9e-27 126.3 195 37.4
DCAR_025270 Daucus carota HOM05D005361 ORTHO05D006518 3.0e-24 116.3 187 38.5
Eucgr.B01653 Eucalyptus grandis HOM05D005361 ORTHO05D006518 9.1e-21 104.8 111 49.5
AagrBONN_evm.TU.Sc2ySwM_368.1952 Anthoceros agrestis HOM05D005361 ORTHO05D006518 1.2e-20 104.4 186 38.7
EL10Ac4g08339 Beta vulgaris HOM05D005361 ORTHO05D006518 3.8e-19 99.4 110 48.2
unitig_0.g2322 Utricularia gibba HOM05D005361 ORTHO05D006518 1.1e-18 97.8 180 37.2
Lalb_Chr21g0310361 Lupinus albus HOM05D005361 ORTHO05D006518 1.6e-17 94.0 92 48.9
CBR_g47086 Chara braunii HOM05D005361 ORTHO05D006518 1.1e-13 81.3 164 34.1
SEGI_00954 Sequoiadendron giganteum HOM05D005361 ORTHO05D006518 1.0e-11 74.7 117 40.2
VMungo1383G1416 Vigna mungo HOM05D006987 ORTHO05D000525 7.2e-10 68.6 159 32.7
Phvul.001G266900 Phaseolus vulgaris HOM05D006987 ORTHO05D000525 1.2e-09 67.8 159 32.7
Glyma.18G002300 Glycine max HOM05D006987 ORTHO05D000525 3.6e-09 66.2 159 32.7
PSO832G4367 Papaver somniferum HOM05D005361 ORTHO05D006518 2.3e-08 63.5 70 47.1
EL10Ac7g17359 Beta vulgaris HOM05D000762 ORTHO05D006518 5.2e-08 62.4 56 48.2
Eucgr.B02058 Eucalyptus grandis HOM05D005361 ORTHO05D006518 6.7e-08 62.0 58 51.7
Lsat_1_v5_gn_2_135240 Lactuca sativa HOM05D006088 ORTHO05D007281 3.3e-07 59.7 232 25.0
ATR0693G315 Amborella trichopoda HOM05D000886 ORTHO05D000525 4.4e-07 59.3 145 32.4
PRCOL_00002312 Prasinoderma coloniale HOM05D005361 ORTHO05D006518 4.4e-07 59.3 183 25.7
Eucgr.B02091 Eucalyptus grandis HOM05D005361 ORTHO05D006518 7.5e-07 58.5 48 60.4
CANSAT78G0110 Cannabis sativa HOM05D006987 ORTHO05D000525 9.7e-07 58.2 185 28.6
Glyma.11G254800 Glycine max HOM05D006987 ORTHO05D000525 1.7e-06 57.4 158 29.1
Ca_12770_v3 Cicer arietinum L. HOM05D006088 ORTHO05D007281 2.2e-06 57.0 185 28.1
Ca_12778_v3 Cicer arietinum L. HOM05D006088 ORTHO05D007281 2.2e-06 57.0 185 28.1
MBI12_g21748_MAGBIO Magnolia biondii HOM05D006088 ORTHO05D007281 2.2e-06 57.0 207 28.5
TPR.G24535 Trifolium pratense HOM05D006088 ORTHO05D007281 2.2e-06 57.0 185 28.1
RcHm_v2.0_Chr4g0413601 Rosa chinensis HOM05D006987 ORTHO05D000525 3.7e-06 56.2 166 28.9
GSVIVG01038590001 Vitis vinifera HOM05D006088 ORTHO05D007281 3.7e-06 56.2 196 27.6
FvH4_7g32160 Fragaria vesca HOM05D006088 ORTHO05D007281 4.8e-06 55.8 183 26.8
FAN06G1538 Fragaria x ananassa HOM05D006088 ORTHO05D007281 4.8e-06 55.8 183 26.8
Psat6g035960 Pisum sativum HOM05D006088 ORTHO05D007281 4.8e-06 55.8 185 27.0
Prupe.1G164900 Prunus persica HOM05D006987 ORTHO05D000525 4.8e-06 55.8 173 30.6
CARHR219770 Cardamine hirsuta HOM05D006987 ORTHO05D000525 6.3e-06 55.5 174 29.3
Peaxi162Scf00740g00327 Petunia axillaris HOM05D006088 ORTHO05D007281 6.3e-06 55.5 199 24.6
Phvul.001G074500 Phaseolus vulgaris HOM05D006088 ORTHO05D007281 6.3e-06 55.5 180 27.8
Prupe.2G314700 Prunus persica HOM05D006088 ORTHO05D007281 6.3e-06 55.5 183 27.3
Glyma.18G194300 Glycine max HOM05D000886 ORTHO05D000525 8.2e-06 55.1 164 27.4


User provided reference genes

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