Gene: Sopen01g043780

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g043780
  • Transcript Identifier Sopen01g043780.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 100797705-100809709 : positive

Gene Family Information

  • ID HOM05D005361
  • #Genes/#Species 142/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g043780.1

Descriptions

  • Description Polynucleotidyl transferase, ribonuclease H-like superfamily protein | FUNCTIONS IN: 3-5 exonuclease activity, nucleic acid binding | INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | LOCATED IN: intracellular | EXPRESSED IN: 12 plant structures | EXPRESSED DURING: 6 growth stages | CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold , 3-5 exonuclease | BEST Arabidopsis thaliana protein match is: 3-5 exonuclease domain-containing protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0030422
ISO
PLAZA Integrative Orthologyproduction of siRNA involved in RNA interference AT1G56310
GO:0010587
ISO
PLAZA Integrative OrthologymiRNA catabolic process AT1G56310

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0008408
IEA
InterPro3'-5' exonuclease activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G56310

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010494
ISO
PLAZA Integrative Orthologycytoplasmic stress granule AT1G56310

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002562 3'-5' exonuclease domain
IPR012337 Ribonuclease H-like superfamily
IPR036397 Ribonuclease H superfamily
Mapman id Description
35.1 not assigned.annotated