Gene: AT1G56310

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G56310
  • Transcript Identifier AT1G56310.1
  • Gene Type Coding gene
  • Location Chr1 : 21082863-21085564 : positive

Gene Family Information

  • ID HOM05D005361
  • #Genes/#Species 142/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G56310.1
  • uniprot F4I526

Descriptions

  • Description Polynucleotidyl transferase, ribonuclease H-like superfamily protein
  • Computational description Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: 3'-5' exonuclease domain-containing protein (TAIR:AT5G24340.1); Has 1695 Blast hits to 1690 proteins in 549 species: Archae - 0; Bacteria - 819; Metazoa - 246; Fungi - 58; Plants - 209; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0090305
ISS
Gene Ontologynucleic acid phosphodiester bond hydrolysis
GO:0030422
IMP
Gene Ontologyproduction of siRNA involved in RNA interference1
GO:0010587
IGI
Gene OntologymiRNA catabolic process2
GO:0006139
IEA
GOA Databasenucleobase-containing compound metabolic process
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0008408
IEA
GOA Database3'-5' exonuclease activity
GO:0008408
IBA
Gene Ontology3'-5' exonuclease activity3
GO:0008408
IEA
InterPro3'-5' exonuclease activity
GO:0016740
IEA
GOA Databasetransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0010494
IDA
Gene Ontologycytoplasmic stress granule2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR037432 Exonuclease Mut-7, DEDDy 3'-5' exonuclease domain
IPR002562 3'-5' exonuclease domain
IPR012337 Ribonuclease H-like superfamily
IPR036397 Ribonuclease H superfamily
Mapman id Description
35.1 not assigned.annotated