Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI33827 Sapria himalayana HOM05D005363 ORTHO05D006607 0.0e+00 1426.0 710 100.0
CiPaw.11G177000 Carya illinoinensis HOM05D005363 ORTHO05D006607 5.3e-285 984.2 723 70.1
Potri.001G407300 Populus trichocarpa HOM05D005363 ORTHO05D006607 2.9e-283 978.4 728 70.1
Manes.15G082900 Manihot esculenta HOM05D005363 ORTHO05D006607 2.7e-281 971.8 725 69.4
Thecc.07G070700 Theobroma cacao HOM05D005363 ORTHO05D006607 5.2e-280 967.6 727 68.1
TAR629G3355 Trochodendron aralioides HOM05D005363 ORTHO05D006607 4.4e-279 964.5 726 68.9
CANSAT11G0579 Cannabis sativa HOM05D005363 ORTHO05D006607 3.1e-277 958.4 725 67.9
Ciclev10007579m.g Citrus clementina HOM05D005363 ORTHO05D006607 9.1e-277 956.8 730 67.8
Glyma.12G219100 Glycine max HOM05D005363 ORTHO05D006607 1.6e-276 956.1 717 67.8
QL08p017669 Quercus lobata HOM05D005363 ORTHO05D006607 1.6e-276 956.1 777 65.1
GSVIVG01014441001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.0e-275 953.4 726 68.0
arahy.Tifrunner.gnm1.ann1.42XSYF Arachis hypogaea HOM05D005363 ORTHO05D006607 1.9e-274 949.1 719 68.0
CSS0003917 Camellia sinensis var. sinensis HOM05D005363 ORTHO05D006607 1.2e-273 946.4 720 67.6
Cpa.g.sc12.44 Carica papaya HOM05D005363 ORTHO05D006607 2.7e-273 945.3 713 67.5
Lalb_Chr25g0286791 Lupinus albus HOM05D005363 ORTHO05D006607 2.7e-273 945.3 708 68.6
Sc03g0009580 Simmondsia chinensis HOM05D005363 ORTHO05D006607 1.8e-272 942.6 725 68.3
Actinidia35283 Actinidia chinensis HOM05D005363 ORTHO05D006607 4.0e-272 941.4 732 66.7
Duzib170G0704 Durio zibethinus HOM05D005363 ORTHO05D006607 4.0e-272 941.4 725 66.9
arahy.Tifrunner.gnm1.ann1.3P80NP Arachis hypogaea HOM05D005363 ORTHO05D006607 6.8e-272 940.6 717 67.9
MSTRG.5819 Avicennia marina HOM05D005363 ORTHO05D006607 2.6e-271 938.7 733 66.0
Phvul.005G085700 Phaseolus vulgaris HOM05D005363 ORTHO05D006607 7.5e-271 937.2 719 66.8
Nn1g03887 Nelumbo nucifera HOM05D005363 ORTHO05D006607 3.7e-270 934.9 723 66.5
HanXRQChr03g0077211 Helianthus annuus HOM05D005363 ORTHO05D006607 8.3e-270 933.7 724 66.7
PGR083G1158 Punica granatum HOM05D005363 ORTHO05D006607 3.1e-269 931.8 733 67.5
Gorai.009G430700 Gossypium raimondii HOM05D005363 ORTHO05D006607 4.1e-269 931.4 730 66.0
Gohir.D05G362100 Gossypium hirsutum HOM05D005363 ORTHO05D006607 5.4e-269 931.0 730 65.9
Dinv08347 Davidia involucrata HOM05D005363 ORTHO05D006607 7.0e-269 930.6 744 66.4
Prupe.4G191100 Prunus persica HOM05D005363 ORTHO05D006607 1.2e-268 929.9 719 66.1
Oeu009902.1 Olea europaea HOM05D005363 ORTHO05D006607 1.6e-268 929.5 732 66.7
COL.COLO4_09485 Corchorus olitorius HOM05D005363 ORTHO05D006607 1.9e-266 922.5 726 66.4
MD11G1235900 Malus domestica HOM05D005363 ORTHO05D006607 7.3e-266 920.6 722 65.9
Migut.J00972 Erythranthe guttata HOM05D005363 ORTHO05D006607 1.6e-265 919.5 729 65.8
Lj3g0015043 Lotus japonicus HOM05D005363 ORTHO05D006607 1.6e-265 919.5 720 66.0
RcHm_v2.0_Chr5g0036071 Rosa chinensis HOM05D005363 ORTHO05D006607 4.7e-265 917.9 721 64.9
Psat2g184560 Pisum sativum HOM05D005363 ORTHO05D006607 1.0e-264 916.8 714 66.4
CARHR267540 Cardamine hirsuta HOM05D005363 ORTHO05D006607 3.0e-264 915.2 723 66.0
Sabra16G0268700 Salix brachista HOM05D005363 ORTHO05D006607 3.0e-264 915.2 717 68.5
Aqoxy1G03881 Aquilegia oxysepala HOM05D005363 ORTHO05D006607 2.0e-263 912.5 719 65.8
MD03G1218100 Malus domestica HOM05D005363 ORTHO05D006607 3.4e-263 911.8 721 65.0
CsaV3_3G044350 Cucumis sativus L. HOM05D005363 ORTHO05D006607 1.1e-261 906.7 719 66.9
ClCG11G018480 Citrullus lanatus HOM05D005363 ORTHO05D006607 3.2e-261 905.2 710 67.2
ECA240G2604 Erigeron canadensis HOM05D005363 ORTHO05D006607 9.2e-261 903.7 721 64.8
PSO832G2870 Papaver somniferum HOM05D005363 ORTHO05D006607 2.0e-260 902.5 732 64.5
Medtr2g081100 Medicago truncatula HOM05D005363 ORTHO05D006607 2.7e-260 902.1 708 66.7
Aa31LG3G10220 Aethionema arabicum HOM05D005363 ORTHO05D006607 4.6e-260 901.4 722 65.7
PSO210G7030 Papaver somniferum HOM05D005363 ORTHO05D006607 5.9e-260 901.0 730 64.0
FAN11G3021 Fragaria x ananassa HOM05D005363 ORTHO05D006607 6.6e-259 897.5 717 64.9
FvH4_3g21040 Fragaria vesca HOM05D005363 ORTHO05D006607 8.6e-259 897.1 717 64.9
SalBow3G2312 Salvia bowleyana HOM05D005363 ORTHO05D006607 8.6e-259 897.1 751 63.1
Sp6g16300 Schrenkiella parvula HOM05D005363 ORTHO05D006607 1.5e-258 896.3 721 65.0
vmacro09564 Vaccinium macrocarpon HOM05D005363 ORTHO05D006607 1.5e-258 896.3 688 67.3
Sabra16G0270900 Salix brachista HOM05D005363 ORTHO05D006607 4.3e-258 894.8 640 72.8
Thhalv10012804m.g Eutrema salsugineum HOM05D005363 ORTHO05D006607 3.6e-257 891.7 721 64.5
AT5G54260 Arabidopsis thaliana HOM05D005363 ORTHO05D006607 4.7e-257 891.3 725 64.8
Sed0012869 Sechium edule HOM05D005363 ORTHO05D006607 4.7e-257 891.3 715 64.9
SGA_v2.0_scaffold13G06767 Striga asiatica HOM05D005363 ORTHO05D006607 8.0e-257 890.6 739 62.8
TPR.G32857 Trifolium pratense HOM05D005363 ORTHO05D006607 1.4e-256 889.8 616 72.4
Carub.0008s1460 Capsella rubella HOM05D005363 ORTHO05D006607 3.1e-256 888.6 605 72.9
Lsat_1_v5_gn_9_95600 Lactuca sativa HOM05D005363 ORTHO05D006607 4.0e-256 888.3 730 64.7
FAN21G3123 Fragaria x ananassa HOM05D005363 ORTHO05D006607 5.2e-256 887.9 718 64.5
Sopen09g004090 Solanum pennellii HOM05D005363 ORTHO05D006607 8.9e-256 887.1 550 78.4
BcaC04g20356 Brassica carinata HOM05D005363 ORTHO05D006607 2.2e-254 882.5 720 64.3
Hma1.2p1_1176F.1_g264200 Hydrangea macrophylla HOM05D005363 ORTHO05D006607 3.7e-254 881.7 741 63.7
HPP92_026561 Vanilla planifolia HOM05D005363 ORTHO05D006607 6.4e-254 880.9 720 63.6
AL8G29590 Arabidopsis lyrata HOM05D005363 ORTHO05D006607 1.4e-253 879.8 706 65.4
FAN25G3415 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.4e-253 879.8 718 63.6
THA.LOC104813315 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 1.9e-253 879.4 522 81.4
BcaB08g35781 Brassica carinata HOM05D005363 ORTHO05D006607 4.1e-253 878.2 719 63.7
HPP92_026534 Vanilla planifolia HOM05D005363 ORTHO05D006607 6.0e-252 874.4 730 63.2
Haze_09533 Corylus avellana HOM05D005363 ORTHO05D006607 7.8e-252 874.0 801 60.9
CAN.G824.3 Capsicum annuum HOM05D005363 ORTHO05D006607 1.0e-251 873.6 637 69.5
ATR0693G020 Amborella trichopoda HOM05D005363 ORTHO05D006607 1.7e-251 872.8 711 62.4
Cc06_g05460 Coffea canephora HOM05D005363 ORTHO05D006607 5.0e-251 871.3 498 83.5
EL10Ac4g08052 Beta vulgaris HOM05D005363 ORTHO05D006607 8.6e-251 870.5 769 60.1
BolC9t57330H Brassica oleracea HOM05D005363 ORTHO05D006607 8.6e-251 870.5 734 63.4
BraA10t43250Z Brassica rapa HOM05D005363 ORTHO05D006607 3.3e-250 868.6 729 63.2
Gohir.D01G056400 Gossypium hirsutum HOM05D005363 ORTHO05D006607 1.1e-248 863.6 711 64.0
C09p44570 Brassica napus HOM05D005363 ORTHO05D006607 3.1e-248 862.1 650 68.0
A10p11550 Brassica napus HOM05D005363 ORTHO05D006607 5.2e-248 861.3 652 67.8
Zm00001eb069270 Zea mays HOM05D005363 ORTHO05D006607 8.9e-248 860.5 714 64.4
Os04g0635900 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 1.2e-247 860.1 715 62.9
MBI15_g19746_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 4.1e-245 851.7 672 65.8
unitig_8.g4146 Utricularia gibba HOM05D005363 ORTHO05D006607 4.1e-245 851.7 734 61.0
RhsimUnG0258300 Rhododendron simsii HOM05D005363 ORTHO05D006607 3.0e-243 845.5 631 68.5
Peaxi162Scf00290g00111 Petunia axillaris HOM05D005363 ORTHO05D006607 3.6e-241 838.6 593 71.3
Hund02186 Selenicereus undatus HOM05D005363 ORTHO05D006607 4.7e-241 838.2 716 63.1
DCAR_018424 Daucus carota HOM05D005363 ORTHO05D006607 8.1e-241 837.4 668 65.6
Lj8C160T16 Lonicera japonica HOM05D005363 ORTHO05D006607 8.9e-240 833.9 734 61.7
Gorai.002G076500 Gossypium raimondii HOM05D005363 ORTHO05D006607 1.5e-239 833.2 728 62.2
VMungo1080G1535 Vigna mungo HOM05D005363 ORTHO05D006607 2.7e-236 822.4 473 82.0
Gohir.A04G025700 Gossypium hirsutum HOM05D005363 ORTHO05D006607 2.8e-233 812.4 741 59.6
MELO3C018187.2 Cucumis melo HOM05D005363 ORTHO05D006607 3.6e-225 785.4 717 60.5
AUR62015595 Chenopodium quinoa HOM05D005363 ORTHO05D006607 4.6e-220 768.5 525 72.0
AUR62029306 Chenopodium quinoa HOM05D005363 ORTHO05D006607 5.3e-216 755.0 799 53.3
Gohir.A04G026000 Gossypium hirsutum HOM05D005363 ORTHO05D006607 7.1e-213 744.6 630 62.2
Pp3c24_2350 Physcomitrium patens HOM05D005363 ORTHO05D006607 8.7e-211 737.6 575 61.9
FAN16G0276 Fragaria x ananassa HOM05D005363 ORTHO05D006607 1.3e-209 733.8 731 55.5
Mapoly0023s0117 Marchantia polymorpha HOM05D005363 ORTHO05D006607 2.1e-209 733.0 716 55.6
AagrBONN_evm.TU.Sc2ySwM_117.2240 Anthoceros agrestis HOM05D005363 ORTHO05D006607 1.1e-200 704.1 729 52.9
SMO347G0170 Selaginella moellendorffii HOM05D005363 ORTHO05D006607 1.3e-195 687.2 493 66.3
CDE12G0672 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.7e-190 670.2 399 80.2
CBR_g48040 Chara braunii HOM05D005363 ORTHO05D006607 8.2e-177 624.8 542 56.5
Atru.chr2.2913 Acer truncatum HOM05D005363 ORTHO05D006607 2.4e-176 623.2 338 85.8
Os08g0177600 Oryza sativa ssp. japonica HOM05D005363 ORTHO05D006607 3.7e-169 599.4 532 56.4
Zm00001eb171920 Zea mays HOM05D005363 ORTHO05D006607 2.2e-166 590.1 502 56.4
Nitab4.5_0001969g0080 Nicotiana tabacum HOM05D005363 ORTHO05D006607 7.2e-165 585.1 654 53.1
Ca_01813_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 2.3e-155 553.5 364 73.6
Eucgr.F01076 Eucalyptus grandis HOM05D005363 ORTHO05D006607 1.4e-152 544.3 555 56.4
Nitab4.5_0007366g0050 Nicotiana tabacum HOM05D005363 ORTHO05D006607 4.1e-136 489.6 500 56.2
Cre12.g556911 Chlamydomonas reinhardtii HOM05D005363 ORTHO05D006607 1.1e-133 481.5 513 48.0
unitig_13.g31430 Utricularia gibba HOM05D005363 ORTHO05D006607 8.6e-126 455.3 500 52.4
MCO13G379 Micromonas commoda HOM05D005363 ORTHO05D006607 1.2e-124 451.4 566 45.1
SEGI_22122 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 2.6e-114 417.2 255 74.1
PRCOL_00003292 Prasinoderma coloniale HOM05D005363 ORTHO05D006607 2.9e-113 413.7 526 44.5
Cfa025591 Carpinus fangiana HOM05D005363 ORTHO05D006607 2.4e-99 367.5 521 39.7
Nitab4.5_0007366g0060 Nicotiana tabacum HOM05D005363 ORTHO05D006607 1.4e-96 358.2 219 78.1
PGSC0003DMG400002669 Solanum tuberosum HOM05D005363 ORTHO05D006607 4.6e-87 326.6 197 77.2
Atru.chr2.2912 Acer truncatum HOM05D005363 ORTHO05D006607 2.0e-82 311.2 377 51.2
CAN.G397.4 Capsicum annuum HOM05D005363 ORTHO05D006607 5.5e-80 303.1 263 60.5
MBI09_g27609_MAGBIO Magnolia biondii HOM05D005363 ORTHO05D006607 7.0e-67 259.6 157 76.4
Eucgr.C01186 Eucalyptus grandis HOM05D005363 ORTHO05D006607 5.9e-58 229.9 368 44.8
CDE12G0057 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 3.8e-57 227.3 172 64.5
CDE12G0487 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 1.6e-47 195.3 308 43.5
SEGI_32923 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 3.5e-42 177.6 98 83.7
Ca_01800_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 5.4e-35 153.7 212 45.8
Ca_30473_v3 Cicer arietinum L. HOM05D005363 ORTHO05D006607 2.7e-34 151.4 200 47.0
GSVIVG01001519001 Vitis vinifera HOM05D005363 ORTHO05D006607 2.4e-27 128.3 99 65.7
SEGI_35588 Sequoiadendron giganteum HOM05D005363 ORTHO05D006607 4.6e-26 124.0 295 33.9
CDE12G0011 Ceratophyllum demersum HOM05D005363 ORTHO05D006607 6.8e-22 110.2 76 72.4
arahy.Tifrunner.gnm1.ann1.Q8WXS4 Arachis hypogaea HOM05D005363 ORTHO05D006607 4.0e-14 84.3 105 46.7
Cc06_g05450 Coffea canephora HOM05D005363 ORTHO05D006607 7.1e-11 73.6 235 32.8
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.6e-08 63.9 273 28.2
THA.LOC104811844 Tarenaya hassleriana HOM05D005363 ORTHO05D006607 3.1e-06 58.2 202 30.7


User provided reference genes

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