Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI28208 Sapria himalayana HOM05D000283 ORTHO05D004861 8.6e-44 179.9 87 100.0
Sc20g0002340 Simmondsia chinensis HOM05D000283 ORTHO05D004861 1.9e-14 82.4 44 81.8
Nitab4.5_0006737g0080 Nicotiana tabacum HOM05D000283 ORTHO05D004861 5.4e-14 80.9 47 76.6
Psat6g239360 Pisum sativum HOM05D000283 ORTHO05D004861 5.4e-14 80.9 42 85.7
SGA_v2.0_scaffold426G51499 Striga asiatica HOM05D000283 ORTHO05D004861 9.2e-14 80.1 77 54.5
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 1.2e-13 79.7 42 83.3
Potri.008G047300 Populus trichocarpa HOM05D000283 ORTHO05D004861 1.6e-13 79.3 41 87.8
Actinidia13845 Actinidia chinensis HOM05D000283 ORTHO05D004861 2.1e-13 79.0 41 85.4
MD01G1115600 Malus domestica HOM05D000283 ORTHO05D004861 2.1e-13 79.0 42 83.3
CANSAT56G1270 Cannabis sativa HOM05D000283 ORTHO05D004861 3.5e-13 78.2 41 85.4
Ca_11339_v3 Cicer arietinum L. HOM05D000283 ORTHO05D004861 3.5e-13 78.2 41 85.4
FvH4_7g20680 Fragaria vesca HOM05D000283 ORTHO05D004861 3.5e-13 78.2 41 85.4
FAN01G0258 Fragaria x ananassa HOM05D000283 ORTHO05D004861 3.5e-13 78.2 41 85.4
FAN01G0780 Fragaria x ananassa HOM05D000283 ORTHO05D004861 3.5e-13 78.2 41 85.4
FAN03G0565 Fragaria x ananassa HOM05D000283 ORTHO05D004861 3.5e-13 78.2 41 85.4
FAN06G3181 Fragaria x ananassa HOM05D000283 ORTHO05D004861 3.5e-13 78.2 41 85.4
FAN06G3682 Fragaria x ananassa HOM05D000283 ORTHO05D004861 3.5e-13 78.2 41 85.4
FAN10G1136 Fragaria x ananassa HOM05D000283 ORTHO05D004861 3.5e-13 78.2 41 85.4
Glyma.10G292551 Glycine max HOM05D000283 ORTHO05D004861 3.5e-13 78.2 41 85.4
Glyma.20G242800 Glycine max HOM05D000283 ORTHO05D004861 3.5e-13 78.2 41 85.4
Lj5g0010112 Lotus japonicus HOM05D004526 ORTHO05D004861 3.5e-13 78.2 41 85.4
MD01G1115200 Malus domestica HOM05D000283 ORTHO05D004861 3.5e-13 78.2 41 85.4
MD07G1183500 Malus domestica HOM05D000283 ORTHO05D004861 3.5e-13 78.2 41 85.4
Prupe.2G222200 Prunus persica HOM05D000283 ORTHO05D004861 3.5e-13 78.2 41 85.4
RcHm_v2.0_Chr1g0364711 Rosa chinensis HOM05D000283 ORTHO05D004861 3.5e-13 78.2 41 85.4
TPR.G40391 Trifolium pratense HOM05D000283 ORTHO05D004861 3.5e-13 78.2 41 85.4
TWI63G0514 Tripterygium wilfordii HOM05D000283 ORTHO05D004861 3.5e-13 78.2 41 85.4
CDE11G0382 Ceratophyllum demersum HOM05D000283 ORTHO05D004861 7.8e-13 77.0 41 85.4
Manes.10G039500 Manihot esculenta HOM05D000283 ORTHO05D004861 7.8e-13 77.0 41 82.9
Rhsim09G0155700 Rhododendron simsii HOM05D000283 ORTHO05D004861 7.8e-13 77.0 41 80.5
GSVIVG01032634001 Vitis vinifera HOM05D000283 ORTHO05D004861 7.8e-13 77.0 41 82.9
arahy.Tifrunner.gnm1.ann1.5B7TYX Arachis hypogaea HOM05D000283 ORTHO05D004861 1.0e-12 76.6 41 82.9
arahy.Tifrunner.gnm1.ann1.M3B011 Arachis hypogaea HOM05D000283 ORTHO05D004861 1.0e-12 76.6 41 82.9
Cpa.g.sc1.298 Carica papaya HOM05D000283 ORTHO05D004861 1.0e-12 76.6 41 82.9
Cfa001563 Carpinus fangiana HOM05D000283 ORTHO05D004861 1.0e-12 76.6 41 82.9
Haze_16966 Corylus avellana HOM05D000283 ORTHO05D004861 1.0e-12 76.6 41 82.9
Nn2g12826 Nelumbo nucifera HOM05D000283 ORTHO05D004861 1.0e-12 76.6 41 82.9
Phvul.007G007400 Phaseolus vulgaris HOM05D000283 ORTHO05D004861 1.0e-12 76.6 41 82.9
VMungo0720G1844 Vigna mungo HOM05D000283 ORTHO05D004861 1.0e-12 76.6 41 82.9
CAN.G786.36 Capsicum annuum HOM05D000283 ORTHO05D004861 1.3e-12 76.3 41 80.5
CiPaw.02G178300 Carya illinoinensis HOM05D000283 ORTHO05D004861 1.3e-12 76.3 41 82.9
Medtr1g116055 Medicago truncatula HOM05D000283 ORTHO05D004861 1.3e-12 76.3 41 82.9
Nitab4.5_0007221g0020 Nicotiana tabacum HOM05D000283 ORTHO05D004861 1.3e-12 76.3 41 80.5
Peaxi162Scf00135g00213 Petunia axillaris HOM05D000283 ORTHO05D004861 1.3e-12 76.3 41 80.5
Solyc04g010120.3 Solanum lycopersicum HOM05D000283 ORTHO05D004861 1.3e-12 76.3 41 80.5
MBI15_g43999_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 1.7e-12 75.9 54 64.8
CSS0021401 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 2.3e-12 75.5 41 80.5
CSS0032920 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 2.3e-12 75.5 41 80.5
Cc02_g08700 Coffea canephora HOM05D000283 ORTHO05D004861 2.3e-12 75.5 41 80.5
Dinv31387 Davidia involucrata HOM05D000283 ORTHO05D004861 2.3e-12 75.5 41 80.5
Gohir.A05G343200 Gossypium hirsutum HOM05D000283 ORTHO05D004861 2.3e-12 75.5 41 80.5
Oeu050636.1 Olea europaea HOM05D000283 ORTHO05D004861 2.3e-12 75.5 41 80.5
Hund22437 Selenicereus undatus HOM05D000283 ORTHO05D004861 2.3e-12 75.5 41 80.5
Thecc.10G063500 Theobroma cacao HOM05D000283 ORTHO05D004861 2.3e-12 75.5 41 80.5
Atru.BG.269.p Acer truncatum HOM05D000283 ORTHO05D004861 3.0e-12 75.1 41 80.5
MBI02_g23397_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 3.0e-12 75.1 40 85.0
CSS0019692 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 3.9e-12 74.7 41 78.0
Ciclev10031660m.g Citrus clementina HOM05D000283 ORTHO05D004861 3.9e-12 74.7 41 80.5
Sabra10G0165600 Salix brachista HOM05D000283 ORTHO05D004861 3.9e-12 74.7 41 82.9
AT3G55070 Arabidopsis thaliana HOM05D000283 ORTHO05D004861 5.1e-12 74.3 42 78.6
CSS0006131 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 5.1e-12 74.3 40 80.0
ECA232G1460 Erigeron canadensis HOM05D000283 ORTHO05D004861 5.1e-12 74.3 41 78.0
HanXRQChr09g0246601 Helianthus annuus HOM05D000283 ORTHO05D004861 5.1e-12 74.3 41 78.0
Lj8A93G63 Lonicera japonica HOM05D000283 ORTHO05D004861 5.1e-12 74.3 41 78.0
TAR623G1321 Trochodendron aralioides HOM05D000283 ORTHO05D004861 5.1e-12 74.3 41 80.5
Aqoxy4G03100 Aquilegia oxysepala HOM05D000283 ORTHO05D004861 6.6e-12 73.9 41 78.0
Duzib106G0238 Durio zibethinus HOM05D000283 ORTHO05D004861 6.6e-12 73.9 41 80.5
Hma1.2p1_0348F.1_g131730 Hydrangea macrophylla HOM05D000283 ORTHO05D004861 6.6e-12 73.9 41 78.0
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 6.6e-12 73.9 41 78.0
Lalb_Chr21g0307121 Lupinus albus HOM05D000283 ORTHO05D004861 6.6e-12 73.9 41 80.5
Manes.07G106200 Manihot esculenta HOM05D000283 ORTHO05D004861 6.6e-12 73.9 42 78.6
Sopen04g005260 Solanum pennellii HOM05D000283 ORTHO05D004861 6.6e-12 73.9 41 78.0
Carub.0005s2170 Capsella rubella HOM05D000283 ORTHO05D004861 8.7e-12 73.6 42 78.6
CARHR165090 Cardamine hirsuta HOM05D000283 ORTHO05D004861 8.7e-12 73.6 42 78.6
COL.COLO4_05799 Corchorus olitorius HOM05D000283 ORTHO05D004861 8.7e-12 73.6 41 78.0
Gohir.D04G081100 Gossypium hirsutum HOM05D000283 ORTHO05D004861 8.7e-12 73.6 41 80.5
Lalb_Chr02g0143841 Lupinus albus HOM05D000283 ORTHO05D004861 8.7e-12 73.6 41 80.5
SalBow6G5798 Salvia bowleyana HOM05D000283 ORTHO05D004861 8.7e-12 73.6 41 78.0
unitig_0.g2403 Utricularia gibba HOM05D000283 ORTHO05D004861 8.7e-12 73.6 42 76.2
A09p48090 Brassica napus HOM05D000283 ORTHO05D004861 1.1e-11 73.2 40 82.5
C08p30310 Brassica napus HOM05D000283 ORTHO05D004861 1.1e-11 73.2 40 82.5
BraA09t40263Z Brassica rapa HOM05D000283 ORTHO05D004861 1.1e-11 73.2 40 82.5
Eucgr.J01144 Eucalyptus grandis HOM05D000283 ORTHO05D004861 1.1e-11 73.2 41 75.6
Thhalv10010415m.g Eutrema salsugineum HOM05D000283 ORTHO05D004861 1.1e-11 73.2 42 78.6
Sp5g07350 Schrenkiella parvula HOM05D000283 ORTHO05D004861 1.1e-11 73.2 42 78.6
THA.LOC104809995 Tarenaya hassleriana HOM05D000283 ORTHO05D004861 1.1e-11 73.2 41 80.5
AL5G36190 Arabidopsis lyrata HOM05D000283 ORTHO05D004861 1.5e-11 72.8 41 80.5
HanXRQChr15g0496791 Helianthus annuus HOM05D000283 ORTHO05D004861 1.5e-11 72.8 41 75.6
RcHm_v2.0_Chr5g0057291 Rosa chinensis HOM05D000283 ORTHO05D004861 1.5e-11 72.8 41 80.5
BcaB01g00131 Brassica carinata HOM05D000283 ORTHO05D004861 1.9e-11 72.4 40 82.5
BcaC07g39830 Brassica carinata HOM05D000283 ORTHO05D004861 1.9e-11 72.4 40 82.5
BolC8t50654H Brassica oleracea HOM05D000283 ORTHO05D004861 1.9e-11 72.4 40 82.5
DCAR_019151 Daucus carota HOM05D000283 ORTHO05D004861 2.5e-11 72.0 41 73.2
DCAR_019154 Daucus carota HOM05D000283 ORTHO05D004861 2.5e-11 72.0 41 73.2
Hma1.2p1_0207F.1_g087990 Hydrangea macrophylla HOM05D000283 ORTHO05D004861 2.5e-11 72.0 41 78.0
PSO384G1824 Papaver somniferum HOM05D000283 ORTHO05D004861 2.5e-11 72.0 42 78.6
PSO699G0010 Papaver somniferum HOM05D000283 ORTHO05D004861 2.5e-11 72.0 42 78.6
PGR044G2742 Punica granatum HOM05D000283 ORTHO05D004861 2.5e-11 72.0 41 80.5
BcaC02g09720 Brassica carinata HOM05D000283 ORTHO05D004861 3.3e-11 71.6 41 78.0
A04p04850 Brassica napus HOM05D000283 ORTHO05D004861 3.3e-11 71.6 41 78.0
C04p37350 Brassica napus HOM05D000283 ORTHO05D004861 3.3e-11 71.6 41 78.0
BolC4t25299H Brassica oleracea HOM05D000283 ORTHO05D004861 3.3e-11 71.6 41 78.0
BraA04t16198Z Brassica rapa HOM05D000283 ORTHO05D004861 3.3e-11 71.6 41 78.0
CiPaw.01G279200 Carya illinoinensis HOM05D000283 ORTHO05D004861 3.3e-11 71.6 40 77.5
ClCG02G013690 Citrullus lanatus HOM05D000283 ORTHO05D004861 3.3e-11 71.6 41 75.6
MELO3C011710.2 Cucumis melo HOM05D000283 ORTHO05D004861 3.3e-11 71.6 41 75.6
CsaV3_5G006500 Cucumis sativus L. HOM05D000283 ORTHO05D004861 3.3e-11 71.6 41 75.6
MBI05_g05301_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 3.3e-11 71.6 41 78.0
Sed0024713 Sechium edule HOM05D000283 ORTHO05D004861 3.3e-11 71.6 41 75.6
Aa31LG10G10070 Aethionema arabicum HOM05D000283 ORTHO05D004861 4.3e-11 71.2 41 78.0
MSTRG.8232 Avicennia marina HOM05D000283 ORTHO05D004861 4.3e-11 71.2 41 78.0
TAR633G2156 Trochodendron aralioides HOM05D000283 ORTHO05D004861 5.6e-11 70.9 41 80.5
Gohir.A10G208700 Gossypium hirsutum HOM05D000283 ORTHO05D004861 7.3e-11 70.5 41 78.0
ATR0810G097 Amborella trichopoda HOM05D000283 ORTHO05D004861 9.6e-11 70.1 41 75.6
Gorai.012G092000 Gossypium raimondii HOM05D000283 ORTHO05D004861 9.6e-11 70.1 41 75.6
QL08p057473 Quercus lobata HOM05D000283 ORTHO05D004861 9.6e-11 70.1 40 80.0
Ah.16g108160 Amaranthus hybridus HOM05D000283 ORTHO05D004861 1.6e-10 69.3 41 75.6
Os05g0160100 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D004861 1.6e-10 69.3 40 75.0
Migut.F01536 Erythranthe guttata HOM05D000283 ORTHO05D004861 2.1e-10 68.9 41 75.6
HPP92_016703 Vanilla planifolia HOM05D000283 ORTHO05D004861 2.1e-10 68.9 41 75.6
Sed0007781 Sechium edule HOM05D000283 ORTHO05D004861 2.8e-10 68.6 41 73.2
Zm00001eb282460 Zea mays HOM05D000283 ORTHO05D004861 3.6e-10 68.2 42 71.4
Gohir.D10G217000 Gossypium hirsutum HOM05D000283 ORTHO05D004861 4.8e-10 67.8 40 77.5
Gorai.011G242600 Gossypium raimondii HOM05D000283 ORTHO05D004861 4.8e-10 67.8 40 77.5
SEGI_26055 Sequoiadendron giganteum HOM05D000283 ORTHO05D004861 4.8e-10 67.8 41 73.2
AUR62025543 Chenopodium quinoa HOM05D000283 ORTHO05D004861 1.1e-09 66.6 41 73.2
AUR62043534 Chenopodium quinoa HOM05D000283 ORTHO05D004861 1.1e-09 66.6 41 73.2
AUR62043801 Chenopodium quinoa HOM05D000283 ORTHO05D004861 1.1e-09 66.6 41 73.2
Pp3c24_18980 Physcomitrium patens HOM05D000283 ORTHO05D004861 1.1e-09 66.6 41 75.6
AagrBONN_evm.TU.Sc2ySwM_228.2194 Anthoceros agrestis HOM05D000283 ORTHO05D004861 2.4e-09 65.5 42 73.8
C08p30300 Brassica napus HOM05D000283 ORTHO05D004861 5.3e-09 64.3 38 81.6
Mapoly0093s0006 Marchantia polymorpha HOM05D000283 ORTHO05D004861 6.9e-09 63.9 41 75.6
BolC6t37451H Brassica oleracea HOM05D000283 ORTHO05D004861 1.5e-08 62.8 41 68.3
Pp3c8_20500 Physcomitrium patens HOM05D000283 ORTHO05D004861 1.5e-08 62.8 41 70.7
Ah.10g033170 Amaranthus hybridus HOM05D000283 ORTHO05D004861 2.6e-08 62.0 41 68.3
SMO119G0426 Selaginella moellendorffii HOM05D000283 ORTHO05D004861 2.6e-08 62.0 40 72.5
MBI08_g12332_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 4.4e-08 61.2 34 79.4
BcaB02g07699 Brassica carinata HOM05D000283 ORTHO05D004861 1.9e-06 55.8 37 73.0
CBR_g863 Chara braunii HOM05D000283 ORTHO05D004861 1.9e-06 55.8 40 67.5
SHI04699 Sapria himalayana HOM05D202366 ORTHO05D004861 1.9e-06 55.8 36 77.8
SHI33745 Sapria himalayana HOM05D005377 ORTHO05D003034 1.9e-06 55.8 36 77.8
SMO111G0010 Selaginella moellendorffii HOM05D000283 ORTHO05D004861 1.9e-06 55.8 39 64.1
SHI11937 Sapria himalayana HOM05D000392 ORTHO05D002065 7.1e-06 53.9 35 74.3
SHI43429 Sapria himalayana HOM05D005377 ORTHO05D003034 7.1e-06 53.9 35 80.0


User provided reference genes

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