Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI28206 Sapria himalayana HOM05D000283 ORTHO05D004861 1.1e-52 209.5 98 100.0
QL08p057473 Quercus lobata HOM05D000283 ORTHO05D004861 3.8e-16 88.2 65 60.0
Sabra10G0165600 Salix brachista HOM05D000283 ORTHO05D004861 5.0e-16 87.8 63 60.3
Duzib106G0238 Durio zibethinus HOM05D000283 ORTHO05D004861 1.1e-15 86.7 63 60.3
Duzib114G0902 Durio zibethinus HOM05D000283 ORTHO05D004861 1.1e-15 86.7 63 60.3
Gohir.A05G343200 Gossypium hirsutum HOM05D000283 ORTHO05D004861 1.1e-15 86.7 63 60.3
Gohir.D04G081100 Gossypium hirsutum HOM05D000283 ORTHO05D004861 1.1e-15 86.7 63 60.3
Gorai.012G092000 Gossypium raimondii HOM05D000283 ORTHO05D004861 1.1e-15 86.7 63 60.3
Thecc.10G063500 Theobroma cacao HOM05D000283 ORTHO05D004861 1.1e-15 86.7 63 60.3
CiPaw.01G279200 Carya illinoinensis HOM05D000283 ORTHO05D004861 2.5e-15 85.5 63 58.7
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 2.5e-15 85.5 63 58.7
TWI63G0514 Tripterygium wilfordii HOM05D000283 ORTHO05D004861 2.5e-15 85.5 63 58.7
TAR623G1321 Trochodendron aralioides HOM05D000283 ORTHO05D004861 2.5e-15 85.5 63 58.7
Atru.BG.269.p Acer truncatum HOM05D000283 ORTHO05D004861 3.2e-15 85.1 63 58.7
Cpa.g.sc1.298 Carica papaya HOM05D000283 ORTHO05D004861 3.2e-15 85.1 63 58.7
Potri.008G047300 Populus trichocarpa HOM05D000283 ORTHO05D004861 3.2e-15 85.1 63 58.7
Sabra08G0033500 Salix brachista HOM05D000283 ORTHO05D004861 3.2e-15 85.1 66 56.1
Cfa001563 Carpinus fangiana HOM05D000283 ORTHO05D004861 4.2e-15 84.7 63 58.7
Haze_16966 Corylus avellana HOM05D000283 ORTHO05D004861 4.2e-15 84.7 63 58.7
Manes.10G039500 Manihot esculenta HOM05D000283 ORTHO05D004861 4.2e-15 84.7 63 58.7
ClCG02G013690 Citrullus lanatus HOM05D000283 ORTHO05D004861 5.5e-15 84.3 63 58.7
Ciclev10031660m.g Citrus clementina HOM05D000283 ORTHO05D004861 5.5e-15 84.3 63 58.7
PGR044G2742 Punica granatum HOM05D000283 ORTHO05D004861 7.2e-15 84.0 63 58.7
COL.COLO4_05799 Corchorus olitorius HOM05D000283 ORTHO05D004861 9.4e-15 83.6 63 57.1
MELO3C011710.2 Cucumis melo HOM05D000283 ORTHO05D004861 9.4e-15 83.6 63 58.7
FvH4_7g20680 Fragaria vesca HOM05D000283 ORTHO05D004861 9.4e-15 83.6 63 57.1
FAN01G0258 Fragaria x ananassa HOM05D000283 ORTHO05D004861 9.4e-15 83.6 63 57.1
FAN01G0780 Fragaria x ananassa HOM05D000283 ORTHO05D004861 9.4e-15 83.6 63 57.1
FAN06G3181 Fragaria x ananassa HOM05D000283 ORTHO05D004861 9.4e-15 83.6 63 57.1
FAN06G3682 Fragaria x ananassa HOM05D000283 ORTHO05D004861 9.4e-15 83.6 63 57.1
FAN10G1136 Fragaria x ananassa HOM05D000283 ORTHO05D004861 9.4e-15 83.6 63 57.1
Hund22437 Selenicereus undatus HOM05D000283 ORTHO05D004861 9.4e-15 83.6 63 57.1
Ah.16g108160 Amaranthus hybridus HOM05D000283 ORTHO05D004861 1.2e-14 83.2 63 58.7
DCAR_019151 Daucus carota HOM05D000283 ORTHO05D004861 1.2e-14 83.2 63 57.1
DCAR_019154 Daucus carota HOM05D000283 ORTHO05D004861 1.2e-14 83.2 63 57.1
Sed0024713 Sechium edule HOM05D000283 ORTHO05D004861 1.2e-14 83.2 63 57.1
GSVIVG01032634001 Vitis vinifera HOM05D000283 ORTHO05D004861 1.2e-14 83.2 63 57.1
AUR62025543 Chenopodium quinoa HOM05D000283 ORTHO05D004861 1.6e-14 82.8 63 57.1
AUR62043534 Chenopodium quinoa HOM05D000283 ORTHO05D004861 1.6e-14 82.8 63 57.1
AUR62043801 Chenopodium quinoa HOM05D000283 ORTHO05D004861 1.6e-14 82.8 63 57.1
Gohir.A10G208700 Gossypium hirsutum HOM05D000283 ORTHO05D004861 1.6e-14 82.8 63 55.6
Lalb_Chr02g0143841 Lupinus albus HOM05D000283 ORTHO05D004861 1.6e-14 82.8 63 57.1
Lalb_Chr21g0307121 Lupinus albus HOM05D000283 ORTHO05D004861 1.6e-14 82.8 63 57.1
MD01G1115600 Malus domestica HOM05D000283 ORTHO05D004861 1.6e-14 82.8 63 55.6
Sed0007781 Sechium edule HOM05D000283 ORTHO05D004861 1.6e-14 82.8 63 57.1
CSS0021401 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 2.1e-14 82.4 63 57.1
CSS0032920 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 2.1e-14 82.4 63 57.1
Cc02_g08700 Coffea canephora HOM05D000283 ORTHO05D004861 2.1e-14 82.4 63 57.1
FAN03G0565 Fragaria x ananassa HOM05D000283 ORTHO05D004861 2.1e-14 82.4 65 53.8
HanXRQChr09g0246601 Helianthus annuus HOM05D000283 ORTHO05D004861 2.1e-14 82.4 63 57.1
HanXRQChr15g0496791 Helianthus annuus HOM05D000283 ORTHO05D004861 2.1e-14 82.4 63 57.1
Hma1.2p1_0207F.1_g087990 Hydrangea macrophylla HOM05D000283 ORTHO05D004861 2.1e-14 82.4 63 57.1
Lj8A93G63 Lonicera japonica HOM05D000283 ORTHO05D004861 2.1e-14 82.4 63 57.1
MD01G1115200 Malus domestica HOM05D000283 ORTHO05D004861 2.1e-14 82.4 63 55.6
Peaxi162Scf00135g00213 Petunia axillaris HOM05D000283 ORTHO05D004861 2.1e-14 82.4 63 57.1
CiPaw.02G178300 Carya illinoinensis HOM05D000283 ORTHO05D004861 2.7e-14 82.0 63 57.1
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 2.7e-14 82.0 69 52.2
SGA_v2.0_scaffold426G51499 Striga asiatica HOM05D000283 ORTHO05D004861 2.7e-14 82.0 66 54.5
CAN.G786.36 Capsicum annuum HOM05D000283 ORTHO05D004861 3.6e-14 81.6 63 57.1
CsaV3_5G006500 Cucumis sativus L. HOM05D000283 ORTHO05D004861 3.6e-14 81.6 63 57.1
Glyma.10G292551 Glycine max HOM05D000283 ORTHO05D004861 3.6e-14 81.6 63 55.6
Glyma.20G242800 Glycine max HOM05D000283 ORTHO05D004861 3.6e-14 81.6 63 55.6
Lj5g0010112 Lotus japonicus HOM05D004526 ORTHO05D004861 3.6e-14 81.6 63 55.6
Medtr1g116055 Medicago truncatula HOM05D000283 ORTHO05D004861 3.6e-14 81.6 63 55.6
Nitab4.5_0007221g0020 Nicotiana tabacum HOM05D000283 ORTHO05D004861 3.6e-14 81.6 63 57.1
Phvul.007G007400 Phaseolus vulgaris HOM05D000283 ORTHO05D004861 3.6e-14 81.6 63 55.6
Prupe.2G222200 Prunus persica HOM05D000283 ORTHO05D004861 3.6e-14 81.6 63 55.6
Sopen04g005260 Solanum pennellii HOM05D000283 ORTHO05D004861 3.6e-14 81.6 63 57.1
VMungo0720G1844 Vigna mungo HOM05D000283 ORTHO05D004861 3.6e-14 81.6 63 55.6
Actinidia13845 Actinidia chinensis HOM05D000283 ORTHO05D004861 4.7e-14 81.3 63 57.1
Hma1.2p1_0348F.1_g131730 Hydrangea macrophylla HOM05D000283 ORTHO05D004861 4.7e-14 81.3 63 57.1
Solyc04g010120.3 Solanum lycopersicum HOM05D000283 ORTHO05D004861 4.7e-14 81.3 63 57.1
TPR.G40391 Trifolium pratense HOM05D000283 ORTHO05D004861 4.7e-14 81.3 63 55.6
CANSAT56G1270 Cannabis sativa HOM05D000283 ORTHO05D004861 6.1e-14 80.9 63 55.6
MD07G1183500 Malus domestica HOM05D000283 ORTHO05D004861 6.1e-14 80.9 63 54.0
Rhsim09G0155700 Rhododendron simsii HOM05D000283 ORTHO05D004861 6.1e-14 80.9 63 57.1
MBI02_g23397_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 8.0e-14 80.5 62 56.5
Zm00001eb282460 Zea mays HOM05D000283 ORTHO05D004861 8.0e-14 80.5 63 55.6
Aqoxy4G03100 Aquilegia oxysepala HOM05D000283 ORTHO05D004861 1.0e-13 80.1 63 55.6
Ca_11339_v3 Cicer arietinum L. HOM05D000283 ORTHO05D004861 1.0e-13 80.1 63 54.0
Os05g0160100 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D004861 1.0e-13 80.1 63 55.6
RcHm_v2.0_Chr1g0364711 Rosa chinensis HOM05D000283 ORTHO05D004861 1.0e-13 80.1 63 55.6
SalBow6G5798 Salvia bowleyana HOM05D000283 ORTHO05D004861 1.0e-13 80.1 63 55.6
Oeu050636.1 Olea europaea HOM05D000283 ORTHO05D004861 1.4e-13 79.7 63 55.6
PSO384G1824 Papaver somniferum HOM05D000283 ORTHO05D004861 1.4e-13 79.7 63 54.0
arahy.Tifrunner.gnm1.ann1.5B7TYX Arachis hypogaea HOM05D000283 ORTHO05D004861 1.8e-13 79.3 63 52.4
arahy.Tifrunner.gnm1.ann1.M3B011 Arachis hypogaea HOM05D000283 ORTHO05D004861 1.8e-13 79.3 63 52.4
CSS0006131 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 1.8e-13 79.3 63 55.6
CSS0019692 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 1.8e-13 79.3 63 55.6
Dinv31387 Davidia involucrata HOM05D000283 ORTHO05D004861 1.8e-13 79.3 63 55.6
ECA232G1460 Erigeron canadensis HOM05D000283 ORTHO05D004861 1.8e-13 79.3 63 54.0
MSTRG.8232 Avicennia marina HOM05D000283 ORTHO05D004861 2.3e-13 79.0 63 54.0
CAN.G786.34 Capsicum annuum HOM05D000283 ORTHO05D004861 2.3e-13 79.0 63 54.0
Nn2g12826 Nelumbo nucifera HOM05D000283 ORTHO05D004861 3.0e-13 78.6 63 55.6
Eucgr.J01144 Eucalyptus grandis HOM05D000283 ORTHO05D004861 4.0e-13 78.2 63 55.6
Gorai.011G242600 Gossypium raimondii HOM05D000283 ORTHO05D004861 4.0e-13 78.2 89 43.8
PSO699G0010 Papaver somniferum HOM05D000283 ORTHO05D004861 4.0e-13 78.2 63 52.4
MBI05_g05301_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D004861 5.2e-13 77.8 63 52.4
THA.LOC104809995 Tarenaya hassleriana HOM05D000283 ORTHO05D004861 6.8e-13 77.4 63 50.8
THA.LOC104810168 Tarenaya hassleriana HOM05D000283 ORTHO05D004861 6.8e-13 77.4 63 50.8
ATR0810G097 Amborella trichopoda HOM05D000283 ORTHO05D004861 8.8e-13 77.0 63 52.4
TAR633G2156 Trochodendron aralioides HOM05D000283 ORTHO05D004861 8.8e-13 77.0 63 55.6
BcaC07g39830 Brassica carinata HOM05D000283 ORTHO05D004861 1.5e-12 76.3 63 54.0
A09p48090 Brassica napus HOM05D000283 ORTHO05D004861 1.5e-12 76.3 63 54.0
C08p30310 Brassica napus HOM05D000283 ORTHO05D004861 1.5e-12 76.3 63 54.0
BolC8t50654H Brassica oleracea HOM05D000283 ORTHO05D004861 1.5e-12 76.3 63 54.0
BraA09t40263Z Brassica rapa HOM05D000283 ORTHO05D004861 1.5e-12 76.3 63 54.0
BcaC02g09720 Brassica carinata HOM05D000283 ORTHO05D004861 2.0e-12 75.9 63 52.4
A04p04850 Brassica napus HOM05D000283 ORTHO05D004861 2.0e-12 75.9 63 52.4
C04p37350 Brassica napus HOM05D000283 ORTHO05D004861 2.0e-12 75.9 63 52.4
BolC4t25299H Brassica oleracea HOM05D000283 ORTHO05D004861 2.0e-12 75.9 63 52.4
BraA04t16198Z Brassica rapa HOM05D000283 ORTHO05D004861 2.0e-12 75.9 63 52.4
Gohir.D10G217000 Gossypium hirsutum HOM05D000283 ORTHO05D004861 2.0e-12 75.9 62 53.2
HPP92_016703 Vanilla planifolia HOM05D000283 ORTHO05D004861 2.0e-12 75.9 63 50.8
CDE11G0382 Ceratophyllum demersum HOM05D000283 ORTHO05D004861 3.4e-12 75.1 63 52.4
CARHR165090 Cardamine hirsuta HOM05D000283 ORTHO05D004861 5.7e-12 74.3 63 52.4
Sp5g07350 Schrenkiella parvula HOM05D000283 ORTHO05D004861 7.5e-12 73.9 63 52.4
Actinidia38228 Actinidia chinensis HOM05D000283 ORTHO05D004861 9.8e-12 73.6 63 54.0
EL10Ac2g03514 Beta vulgaris HOM05D000283 ORTHO05D004861 9.8e-12 73.6 70 51.4
AL5G36190 Arabidopsis lyrata HOM05D000283 ORTHO05D004861 1.3e-11 73.2 63 50.8
Carub.0005s2170 Capsella rubella HOM05D000283 ORTHO05D004861 1.3e-11 73.2 63 50.8
Migut.F01536 Erythranthe guttata HOM05D000283 ORTHO05D004861 1.3e-11 73.2 63 49.2
BcaB01g00131 Brassica carinata HOM05D000283 ORTHO05D004861 2.2e-11 72.4 63 50.8
Thhalv10010415m.g Eutrema salsugineum HOM05D000283 ORTHO05D004861 2.8e-11 72.0 63 50.8
Nitab4.5_0006737g0080 Nicotiana tabacum HOM05D000283 ORTHO05D004861 2.8e-11 72.0 59 55.9
AT3G55070 Arabidopsis thaliana HOM05D000283 ORTHO05D004861 3.7e-11 71.6 63 50.8
Pp3c24_18980 Physcomitrium patens HOM05D000283 ORTHO05D004861 4.8e-11 71.2 65 49.2
SMO119G0426 Selaginella moellendorffii HOM05D000283 ORTHO05D004861 6.3e-11 70.9 63 49.2
Aa31LG10G10070 Aethionema arabicum HOM05D000283 ORTHO05D004861 8.3e-11 70.5 60 51.7
Pp3c8_20500 Physcomitrium patens HOM05D000283 ORTHO05D004861 1.1e-10 70.1 63 50.8
AagrBONN_evm.TU.Sc2ySwM_228.2194 Anthoceros agrestis HOM05D000283 ORTHO05D004861 1.8e-10 69.3 63 47.6
Mapoly0093s0006 Marchantia polymorpha HOM05D000283 ORTHO05D004861 9.1e-10 67.0 62 48.4
CBR_g863 Chara braunii HOM05D000283 ORTHO05D004861 1.2e-09 66.6 65 46.2
SEGI_26055 Sequoiadendron giganteum HOM05D000283 ORTHO05D004861 2.0e-09 65.9 63 46.0
SMO111G0010 Selaginella moellendorffii HOM05D000283 ORTHO05D004861 3.5e-09 65.1 62 48.4
BcaC08g44723 Brassica carinata HOM05D000283 ORTHO05D004861 3.8e-08 61.6 54 55.6
unitig_0.g2403 Utricularia gibba HOM05D000283 ORTHO05D004861 1.9e-07 59.3 48 50.0
Ah.10g033170 Amaranthus hybridus HOM05D000283 ORTHO05D004861 7.2e-07 57.4 63 41.3


User provided reference genes

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