Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI26811 Sapria himalayana HOM05D006183 ORTHO05D007844 8.7e-162 573.5 284 100.0
SHI26778 Sapria himalayana HOM05D006183 ORTHO05D007844 1.8e-90 336.7 316 60.4
MSTRG.18360 Avicennia marina HOM05D006183 ORTHO05D007844 2.6e-73 279.6 342 48.8
Cpa.g.sc87.44 Carica papaya HOM05D006183 ORTHO05D007844 3.7e-72 275.8 342 47.7
Gohir.D07G209800 Gossypium hirsutum HOM05D006183 ORTHO05D007844 3.7e-72 275.8 339 48.7
Cc01_g17710 Coffea canephora HOM05D006183 ORTHO05D007844 4.9e-72 275.4 339 46.9
Lj1g0002370 Lotus japonicus HOM05D006183 ORTHO05D007844 6.4e-72 275.0 339 47.5
Potri.014G193500 Populus trichocarpa HOM05D006183 ORTHO05D007844 6.4e-72 275.0 339 49.0
Sabra14G0143600 Salix brachista HOM05D006183 ORTHO05D007844 6.4e-72 275.0 339 49.0
Ciclev10019299m.g Citrus clementina HOM05D006183 ORTHO05D007844 1.1e-71 274.2 339 48.1
COL.COLO4_20954 Corchorus olitorius HOM05D006183 ORTHO05D007844 1.4e-71 273.9 308 51.6
QL09p042323 Quercus lobata HOM05D006183 ORTHO05D007844 1.9e-71 273.5 341 47.5
Gorai.001G237200 Gossypium raimondii HOM05D006183 ORTHO05D007844 3.2e-71 272.7 339 48.1
Phvul.001G166600 Phaseolus vulgaris HOM05D006183 ORTHO05D007844 3.2e-71 272.7 342 47.4
SGA_v2.0_scaffold1G00669 Striga asiatica HOM05D006183 ORTHO05D007844 3.2e-71 272.7 337 47.2
CSS0020724 Camellia sinensis var. sinensis HOM05D006183 ORTHO05D007844 4.1e-71 272.3 342 47.1
Glyma.19G169500 Glycine max HOM05D006183 ORTHO05D007844 5.4e-71 271.9 342 47.1
Atru.chr5.1959 Acer truncatum HOM05D006183 ORTHO05D007844 7.1e-71 271.6 342 47.4
Medtr7g098900 Medicago truncatula HOM05D006183 ORTHO05D007844 9.2e-71 271.2 342 46.5
VMungo1383G1346 Vigna mungo HOM05D006183 ORTHO05D007844 1.2e-70 270.8 342 47.1
Rhsim13G0040400 Rhododendron simsii HOM05D006183 ORTHO05D007844 1.6e-70 270.4 342 47.1
PGR044G1356 Punica granatum HOM05D006183 ORTHO05D007844 2.1e-70 270.0 339 46.9
Ca_08753_v3 Cicer arietinum L. HOM05D006183 ORTHO05D007844 2.7e-70 269.6 339 46.0
Gohir.A07G203800 Gossypium hirsutum HOM05D006183 ORTHO05D007844 2.7e-70 269.6 339 47.5
Duzib133G1169 Durio zibethinus HOM05D006183 ORTHO05D007844 3.5e-70 269.2 342 47.4
SalBow4G1671 Salvia bowleyana HOM05D006183 ORTHO05D007844 4.6e-70 268.9 342 47.7
arahy.Tifrunner.gnm1.ann1.73B1UV Arachis hypogaea HOM05D006183 ORTHO05D007844 6.0e-70 268.5 339 47.2
arahy.Tifrunner.gnm1.ann1.P69TYL Arachis hypogaea HOM05D006183 ORTHO05D007844 6.0e-70 268.5 339 47.2
Psat3g051320 Pisum sativum HOM05D006183 ORTHO05D007844 6.0e-70 268.5 342 46.2
TPR.G20058 Trifolium pratense HOM05D006183 ORTHO05D007844 6.0e-70 268.5 339 46.0
Cfa002493 Carpinus fangiana HOM05D006183 ORTHO05D007844 7.8e-70 268.1 339 47.5
CiPaw.04G191000 Carya illinoinensis HOM05D006183 ORTHO05D007844 7.8e-70 268.1 339 47.2
Haze_24717 Corylus avellana HOM05D006183 ORTHO05D007844 7.8e-70 268.1 339 47.2
MELO3C012834.2 Cucumis melo HOM05D006183 ORTHO05D007844 7.8e-70 268.1 339 47.2
vmacro02713 Vaccinium macrocarpon HOM05D006183 ORTHO05D007844 7.8e-70 268.1 342 47.4
GSVIVG01028442001 Vitis vinifera HOM05D006183 ORTHO05D007844 7.8e-70 268.1 342 47.1
Lalb_Chr20g0113511 Lupinus albus HOM05D006183 ORTHO05D007844 1.3e-69 267.3 339 46.3
Sopen06g002920 Solanum pennellii HOM05D006183 ORTHO05D007844 1.3e-69 267.3 339 46.9
TAR636G3003 Trochodendron aralioides HOM05D006183 ORTHO05D007844 2.3e-69 266.5 339 46.0
CsaV3_3G028460 Cucumis sativus L. HOM05D006183 ORTHO05D007844 3.0e-69 266.2 339 46.9
Nitab4.5_0009671g0010 Nicotiana tabacum HOM05D006183 ORTHO05D007844 3.9e-69 265.8 339 46.6
Hund18298 Selenicereus undatus HOM05D006183 ORTHO05D007844 5.1e-69 265.4 336 45.8
Dinv43057 Davidia involucrata HOM05D006183 ORTHO05D007844 6.6e-69 265.0 342 47.1
ECA248G2561 Erigeron canadensis HOM05D006183 ORTHO05D007844 6.6e-69 265.0 339 46.9
Eucgr.K01415 Eucalyptus grandis HOM05D006183 ORTHO05D007844 6.6e-69 265.0 342 46.8
Prupe.8G213600 Prunus persica HOM05D006183 ORTHO05D007844 6.6e-69 265.0 339 46.3
RcHm_v2.0_Chr6g0286091 Rosa chinensis HOM05D006183 ORTHO05D007844 1.1e-68 264.2 339 47.5
ClCG07G001450 Citrullus lanatus HOM05D006183 ORTHO05D007844 1.5e-68 263.8 338 47.6
PGSC0003DMG400014711 Solanum tuberosum HOM05D006183 ORTHO05D007844 2.5e-68 263.1 339 46.3
MD10G1174900 Malus domestica HOM05D006183 ORTHO05D007844 3.3e-68 262.7 339 46.3
Nitab4.5_0000326g0320 Nicotiana tabacum HOM05D006183 ORTHO05D007844 3.3e-68 262.7 337 46.3
EL10Ac7g17706 Beta vulgaris HOM05D006183 ORTHO05D007844 7.3e-68 261.5 337 45.1
DCAR_018527 Daucus carota HOM05D006183 ORTHO05D007844 7.3e-68 261.5 339 45.4
FAN27G0957 Fragaria x ananassa HOM05D006183 ORTHO05D007844 7.3e-68 261.5 339 46.3
Sed0027453 Sechium edule HOM05D006183 ORTHO05D007844 1.2e-67 260.8 338 45.9
Aqoxy5G00112 Aquilegia oxysepala HOM05D006183 ORTHO05D007844 1.6e-67 260.4 339 44.8
AUR62025425 Chenopodium quinoa HOM05D006183 ORTHO05D007844 1.6e-67 260.4 349 44.7
FAN24G0209 Fragaria x ananassa HOM05D006183 ORTHO05D007844 2.1e-67 260.0 339 46.0
Migut.D00486 Erythranthe guttata HOM05D006183 ORTHO05D007844 2.8e-67 259.6 339 45.1
Os10g0464100 Oryza sativa ssp. japonica HOM05D006183 ORTHO05D007844 3.6e-67 259.2 338 46.2
FAN15G0492 Fragaria x ananassa HOM05D006183 ORTHO05D007844 4.7e-67 258.8 339 45.7
Hma1.2p1_2051F.1_g312550 Hydrangea macrophylla HOM05D006183 ORTHO05D007844 6.2e-67 258.5 340 46.2
FvH4_2g20290 Fragaria vesca HOM05D006183 ORTHO05D007844 8.1e-67 258.1 339 45.7
Lj1A75T45 Lonicera japonica HOM05D006183 ORTHO05D007844 8.1e-67 258.1 337 45.4
Thecc.01G248600 Theobroma cacao HOM05D006183 ORTHO05D007844 1.1e-66 257.7 339 46.6
AUR62008815 Chenopodium quinoa HOM05D006183 ORTHO05D007844 3.1e-66 256.1 337 44.8
HanXRQChr03g0066991 Helianthus annuus HOM05D006183 ORTHO05D007844 4.0e-66 255.8 337 45.4
THA.LOC104814536 Tarenaya hassleriana HOM05D006183 ORTHO05D007844 1.5e-65 253.8 338 45.9
Zm00001eb222270 Zea mays HOM05D006183 ORTHO05D007844 2.0e-65 253.4 339 45.4
Sc17g0002990 Simmondsia chinensis HOM05D006183 ORTHO05D007844 2.6e-65 253.1 337 44.2
MBI10_g16795_MAGBIO Magnolia biondii HOM05D006183 ORTHO05D007844 1.3e-64 250.8 326 46.3
Lsat_1_v5_gn_5_180141 Lactuca sativa HOM05D006183 ORTHO05D007844 1.7e-64 250.4 339 44.5
Sp3g33570 Schrenkiella parvula HOM05D006183 ORTHO05D007844 3.8e-64 249.2 343 43.4
Thhalv10001927m.g Eutrema salsugineum HOM05D006183 ORTHO05D007844 4.9e-64 248.8 342 43.6
AL3G53280 Arabidopsis lyrata HOM05D006183 ORTHO05D007844 8.4e-64 248.1 342 43.6
PSO210G4577 Papaver somniferum HOM05D006183 ORTHO05D007844 8.4e-64 248.1 337 44.2
BcaB03g16820 Brassica carinata HOM05D006183 ORTHO05D007844 7.1e-63 245.0 342 43.0
SEGI_33423 Sequoiadendron giganteum HOM05D006183 ORTHO05D007844 7.1e-63 245.0 339 42.5
ATR0751G065 Amborella trichopoda HOM05D006183 ORTHO05D007844 2.1e-62 243.4 338 41.7
BcaC06g36716 Brassica carinata HOM05D006183 ORTHO05D007844 2.1e-62 243.4 342 42.4
BolC7t40519H Brassica oleracea HOM05D006183 ORTHO05D007844 2.1e-62 243.4 342 42.4
C07p00800 Brassica napus HOM05D006183 ORTHO05D007844 2.7e-62 243.0 341 42.8
CARHR110860 Cardamine hirsuta HOM05D006183 ORTHO05D007844 3.5e-62 242.7 342 43.3
A07p00380 Brassica napus HOM05D006183 ORTHO05D007844 4.6e-62 242.3 342 42.7
BraA07t27830Z Brassica rapa HOM05D006183 ORTHO05D007844 4.6e-62 242.3 342 42.7
Aa31LG8G17320 Aethionema arabicum HOM05D006183 ORTHO05D007844 1.3e-61 240.7 337 43.3
AT2G20330 Arabidopsis thaliana HOM05D006183 ORTHO05D007844 2.3e-61 240.0 342 43.0
HPP92_025390 Vanilla planifolia HOM05D006183 ORTHO05D007844 2.3e-61 240.0 341 42.5
Carub.0003s3467 Capsella rubella HOM05D006183 ORTHO05D007844 3.9e-61 239.2 342 42.7
Peaxi162Scf00499g00067 Petunia axillaris HOM05D006183 ORTHO05D007844 6.6e-61 238.4 338 43.8
Lj1A75T44 Lonicera japonica HOM05D006183 ORTHO05D007844 9.6e-60 234.6 280 48.9
Oeu015440.1 Olea europaea HOM05D006183 ORTHO05D007844 1.6e-59 233.8 324 43.5
Manes.13G038900 Manihot esculenta HOM05D006183 ORTHO05D007844 5.3e-58 228.8 328 43.3
CDE02G0751 Ceratophyllum demersum HOM05D006183 ORTHO05D007844 3.8e-56 222.6 314 42.7
AagrBONN_evm.TU.Sc2ySwM_228.230 Anthoceros agrestis HOM05D006183 ORTHO05D007844 1.2e-54 217.6 338 39.3
Solyc06g008110.4 Solanum lycopersicum HOM05D006183 ORTHO05D007844 3.5e-54 216.1 321 43.0
Mapoly0020s0160 Marchantia polymorpha HOM05D006183 ORTHO05D007844 3.8e-48 196.1 339 36.0
Actinidia30118 Actinidia chinensis HOM05D006183 ORTHO05D007844 1.8e-45 187.2 290 43.4
CBR_g29722 Chara braunii HOM05D006183 ORTHO05D007844 2.5e-44 183.3 351 35.6
Pp3c3_26410 Physcomitrium patens HOM05D006183 ORTHO05D007844 5.6e-44 182.2 339 34.5
SMO117G0187 Selaginella moellendorffii HOM05D006183 ORTHO05D007844 2.1e-43 180.3 341 35.8
MD05G1186900 Malus domestica HOM05D006183 ORTHO05D007844 3.8e-40 169.5 422 32.7
BcaNung04798 Brassica carinata HOM05D006183 ORTHO05D007844 9.3e-39 164.9 131 60.3
C09p15190 Brassica napus HOM05D006183 ORTHO05D007844 9.3e-39 164.9 131 60.3
BolC9t54425H Brassica oleracea HOM05D006183 ORTHO05D007844 9.3e-39 164.9 131 60.3
Rhsim08G0025400 Rhododendron simsii HOM05D006183 ORTHO05D007844 1.6e-35 154.1 272 39.3
AagrBONN_evm.TU.Sc2ySwM_117.1686 Anthoceros agrestis HOM05D006183 ORTHO05D007844 3.3e-28 129.8 115 56.5
Actinidia37559 Actinidia chinensis HOM05D006183 ORTHO05D007844 6.3e-27 125.6 233 36.9
SEGI_26680 Sequoiadendron giganteum HOM05D006183 ORTHO05D007844 9.7e-20 101.7 134 43.3
Dinv19261 Davidia involucrata HOM05D006183 ORTHO05D007844 6.3e-19 99.0 128 47.7
Cre04.g217750 Chlamydomonas reinhardtii HOM05D006183 ORTHO05D007844 1.2e-14 84.7 133 36.1
unitig_22.g6310 Utricularia gibba HOM05D006183 ORTHO05D007844 1.2e-14 84.7 43 86.0
MCO16G174 Micromonas commoda HOM05D006183 ORTHO05D007844 2.7e-14 83.6 341 24.9
BcaB07g31601 Brassica carinata HOM05D006183 ORTHO05D007844 4.1e-10 69.7 44 70.5
Dinv36951 Davidia involucrata HOM05D006183 ORTHO05D007844 6.5e-08 62.4 47 63.8
HanXRQChr13g0404811 Helianthus annuus HOM05D006183 ORTHO05D007844 6.1e-06 55.8 41 63.4


User provided reference genes

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