Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI25550 Sapria himalayana HOM05D003353 ORTHO05D003751 0.0e+00 1305.8 653 100.0
Haze_14661 Corylus avellana HOM05D003353 ORTHO05D003751 7.8e-89 332.4 600 36.5
Manes.15G182800 Manihot esculenta HOM05D003353 ORTHO05D003751 9.5e-87 325.5 610 36.9
Cfa007435 Carpinus fangiana HOM05D003353 ORTHO05D003751 5.2e-85 319.7 601 36.8
CiPaw.03G037100 Carya illinoinensis HOM05D003353 ORTHO05D003751 1.5e-84 318.2 621 36.1
Atru.chr6.2192 Acer truncatum HOM05D003353 ORTHO05D003751 3.7e-83 313.5 611 35.4
Sabra17G0060500 Salix brachista HOM05D003353 ORTHO05D003751 4.1e-82 310.1 584 36.6
QL02p076799 Quercus lobata HOM05D003353 ORTHO05D003751 4.6e-81 306.6 624 36.2
CiPaw.04G024200 Carya illinoinensis HOM05D003353 ORTHO05D003751 6.0e-81 306.2 567 35.3
MD09G1035200 Malus domestica HOM05D003353 ORTHO05D003751 1.7e-80 304.7 628 34.9
Potri.017G072460 Populus trichocarpa HOM05D003353 ORTHO05D003751 1.7e-80 304.7 590 36.6
Prupe.3G283100 Prunus persica HOM05D003353 ORTHO05D003751 6.6e-80 302.8 597 35.8
TWI36G0997 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 6.6e-80 302.8 603 35.0
Ciclev10014026m.g Citrus clementina HOM05D003353 ORTHO05D003751 2.5e-79 300.8 608 35.9
TWI12G0214 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 2.1e-78 297.7 630 34.6
Thecc.04G008000 Theobroma cacao HOM05D003353 ORTHO05D003751 3.6e-78 297.0 624 34.3
RcHm_v2.0_Chr2g0171081 Rosa chinensis HOM05D003353 ORTHO05D003751 1.8e-77 294.7 605 34.9
Cpa.g.sc215.4 Carica papaya HOM05D003353 ORTHO05D003751 2.3e-77 294.3 739 32.2
Lj2g0012220 Lotus japonicus HOM05D003353 ORTHO05D003751 5.2e-77 293.1 618 33.5
Duzib147G1510 Durio zibethinus HOM05D003353 ORTHO05D003751 2.6e-76 290.8 610 33.6
Glyma.13G170000 Glycine max HOM05D003353 ORTHO05D003751 9.8e-76 288.9 584 34.6
VMungo0464G0152 Vigna mungo HOM05D003353 ORTHO05D003751 6.4e-75 286.2 583 35.0
Glyma.19G010200 Glycine max HOM05D003353 ORTHO05D003751 1.9e-74 284.6 587 34.4
TPR.G2281 Trifolium pratense HOM05D003353 ORTHO05D003751 5.4e-74 283.1 598 34.3
MD17G1035500 Malus domestica HOM05D003353 ORTHO05D003751 2.7e-73 280.8 622 33.8
COL.COLO4_28936 Corchorus olitorius HOM05D003353 ORTHO05D003751 7.8e-73 279.3 594 33.8
Dinv35053 Davidia involucrata HOM05D003353 ORTHO05D003751 1.0e-72 278.9 588 34.9
Nn3g16906 Nelumbo nucifera HOM05D003353 ORTHO05D003751 1.7e-72 278.1 597 33.3
Gohir.A09G026000 Gossypium hirsutum HOM05D003353 ORTHO05D003751 1.5e-71 275.0 607 31.6
Phvul.004G017600 Phaseolus vulgaris HOM05D003353 ORTHO05D003751 1.5e-71 275.0 578 33.2
TAR629G0276 Trochodendron aralioides HOM05D003353 ORTHO05D003751 9.5e-71 272.3 594 33.5
Gorai.006G029600 Gossypium raimondii HOM05D003353 ORTHO05D003751 2.1e-70 271.2 607 31.8
Lalb_Chr02g0160241 Lupinus albus HOM05D003353 ORTHO05D003751 2.8e-70 270.8 615 33.8
Lalb_Chr06g0176091 Lupinus albus HOM05D003353 ORTHO05D003751 6.2e-70 269.6 584 34.6
Psat1g059480 Pisum sativum HOM05D003353 ORTHO05D003751 6.2e-70 269.6 598 33.3
Gohir.D09G025300 Gossypium hirsutum HOM05D003353 ORTHO05D003751 1.1e-69 268.9 607 31.6
FAN02G2799 Fragaria x ananassa HOM05D003353 ORTHO05D003751 2.3e-69 267.7 568 34.0
TAR371G0580 Trochodendron aralioides HOM05D003353 ORTHO05D003751 3.1e-69 267.3 600 34.0
FAN14G4206 Fragaria x ananassa HOM05D003353 ORTHO05D003751 6.8e-69 266.2 567 34.7
Medtr6g007650 Medicago truncatula HOM05D003353 ORTHO05D003751 6.8e-69 266.2 603 33.7
THA.LOC104822384 Tarenaya hassleriana HOM05D003353 ORTHO05D003751 6.8e-69 266.2 587 33.2
CANSAT64G0328 Cannabis sativa HOM05D003353 ORTHO05D003751 2.0e-68 264.6 610 32.5
FvH4_6g50560 Fragaria vesca HOM05D003353 ORTHO05D003751 2.0e-68 264.6 567 34.6
AT3G01460 Arabidopsis thaliana HOM05D003353 ORTHO05D003751 3.4e-68 263.8 581 34.1
Ah.16g106640 Amaranthus hybridus HOM05D003353 ORTHO05D003751 7.6e-68 262.7 598 32.3
arahy.Tifrunner.gnm1.ann1.50RNEG Arachis hypogaea HOM05D003353 ORTHO05D003751 9.9e-68 262.3 595 33.9
EL10Ac2g03352 Beta vulgaris HOM05D003353 ORTHO05D003751 9.9e-68 262.3 611 31.9
CARHR075500 Cardamine hirsuta HOM05D003353 ORTHO05D003751 4.9e-67 260.0 606 33.3
Sp3g00610 Schrenkiella parvula HOM05D003353 ORTHO05D003751 4.9e-67 260.0 576 32.6
Sed0022584 Sechium edule HOM05D003353 ORTHO05D003751 8.3e-67 259.2 733 29.2
Actinidia06029 Actinidia chinensis HOM05D003353 ORTHO05D003751 1.9e-66 258.1 583 32.2
CsaV3_3G042270 Cucumis sativus L. HOM05D003353 ORTHO05D003751 1.9e-66 258.1 746 28.2
FAN09G4608 Fragaria x ananassa HOM05D003353 ORTHO05D003751 1.9e-66 258.1 568 32.7
ClCG10G014330 Citrullus lanatus HOM05D003353 ORTHO05D003751 2.4e-66 257.7 751 29.3
Nn4g22812 Nelumbo nucifera HOM05D003353 ORTHO05D003751 2.4e-66 257.7 596 33.1
BraA01t04666Z Brassica rapa HOM05D003353 ORTHO05D003751 7.1e-66 256.1 615 32.8
BolC5t35150H Brassica oleracea HOM05D003353 ORTHO05D003751 1.2e-65 255.4 586 32.3
BolC1t05958H Brassica oleracea HOM05D003353 ORTHO05D003751 1.6e-65 255.0 580 33.4
Lalb_Chr21g0319411 Lupinus albus HOM05D003353 ORTHO05D003751 1.6e-65 255.0 516 34.7
C09p75140 Brassica napus HOM05D003353 ORTHO05D003751 2.1e-65 254.6 586 32.3
AL3G10710 Arabidopsis lyrata HOM05D003353 ORTHO05D003751 2.7e-65 254.2 577 33.4
BcaB04g21418 Brassica carinata HOM05D003353 ORTHO05D003751 3.5e-65 253.8 613 32.1
Carub.0003s0064 Capsella rubella HOM05D003353 ORTHO05D003751 3.5e-65 253.8 586 33.1
Aqoxy3G02993 Aquilegia oxysepala HOM05D003353 ORTHO05D003751 1.7e-64 251.5 611 32.4
BraA05t23202Z Brassica rapa HOM05D003353 ORTHO05D003751 1.7e-64 251.5 577 32.1
MELO3C009946.2 Cucumis melo HOM05D003353 ORTHO05D003751 3.9e-64 250.4 745 28.2
A05p44550 Brassica napus HOM05D003353 ORTHO05D003751 6.6e-64 249.6 577 31.9
Hund12469 Selenicereus undatus HOM05D003353 ORTHO05D003751 1.1e-63 248.8 589 32.4
Eucgr.I01818 Eucalyptus grandis HOM05D003353 ORTHO05D003751 2.5e-63 247.7 650 31.1
PSO063G6215 Papaver somniferum HOM05D003353 ORTHO05D003751 2.1e-62 244.6 616 30.8
AUR62032109 Chenopodium quinoa HOM05D003353 ORTHO05D003751 2.8e-62 244.2 604 31.3
AUR62042408 Chenopodium quinoa HOM05D003353 ORTHO05D003751 2.8e-62 244.2 602 31.2
BcaC09g47659 Brassica carinata HOM05D003353 ORTHO05D003751 3.6e-62 243.8 561 33.5
Thhalv10019872m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 1.4e-61 241.9 591 31.8
Dinv15308 Davidia involucrata HOM05D003353 ORTHO05D003751 1.8e-61 241.5 622 31.2
Dinv24865 Davidia involucrata HOM05D003353 ORTHO05D003751 4.0e-61 240.4 640 30.2
Sc06g0001590 Simmondsia chinensis HOM05D003353 ORTHO05D003751 5.2e-61 240.0 618 31.2
PGR142G1415 Punica granatum HOM05D003353 ORTHO05D003751 2.0e-60 238.0 594 32.8
Rhsim10G0023100 Rhododendron simsii HOM05D003353 ORTHO05D003751 2.0e-60 238.0 581 31.5
Aa31LG5G10560 Aethionema arabicum HOM05D003353 ORTHO05D003751 4.4e-60 236.9 606 30.2
PSO832G1186 Papaver somniferum HOM05D003353 ORTHO05D003751 4.4e-60 236.9 622 30.1
Sc06g0000060 Simmondsia chinensis HOM05D003353 ORTHO05D003751 7.6e-60 236.1 618 30.9
Lj7A591T75 Lonicera japonica HOM05D003353 ORTHO05D003751 1.7e-59 235.0 617 31.4
QL03p061451 Quercus lobata HOM05D003353 ORTHO05D003751 2.2e-59 234.6 600 29.5
ATR0691G050 Amborella trichopoda HOM05D003353 ORTHO05D003751 8.4e-59 232.6 594 32.2
DCAR_021679 Daucus carota HOM05D003353 ORTHO05D003751 1.9e-58 231.5 576 31.9
vmacro05816 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 7.1e-58 229.6 566 32.0
Atru.chr11.2012 Acer truncatum HOM05D003353 ORTHO05D003751 3.9e-56 223.8 623 29.4
arahy.Tifrunner.gnm1.ann1.S45US4 Arachis hypogaea HOM05D003353 ORTHO05D003751 7.3e-55 219.5 570 31.9
CSS0024289 Camellia sinensis var. sinensis HOM05D003353 ORTHO05D003751 6.2e-54 216.5 586 28.8
Ciclev10030471m.g Citrus clementina HOM05D003353 ORTHO05D003751 6.2e-54 216.5 584 30.5
Haze_12169 Corylus avellana HOM05D003353 ORTHO05D003751 4.0e-53 213.8 594 28.5
Lj6C805G5 Lonicera japonica HOM05D003353 ORTHO05D003751 5.3e-53 213.4 590 29.7
Manes.12G029600 Manihot esculenta HOM05D003353 ORTHO05D003751 4.4e-52 210.3 619 30.4
Cfa009137 Carpinus fangiana HOM05D003353 ORTHO05D003751 7.6e-52 209.5 611 29.0
Zm00001eb206240 Zea mays HOM05D003353 ORTHO05D003751 1.7e-51 208.4 557 31.6
Actinidia15042 Actinidia chinensis HOM05D003353 ORTHO05D003751 6.4e-51 206.5 600 28.7
Cc11_g14600 Coffea canephora HOM05D003353 ORTHO05D003751 1.4e-50 205.3 629 28.1
Actinidia13514 Actinidia chinensis HOM05D003353 ORTHO05D003751 2.4e-50 204.5 610 28.2
Nitab4.5_0002579g0080 Nicotiana tabacum HOM05D003353 ORTHO05D003751 9.3e-50 202.6 597 28.6
Peaxi162Scf00338g00002 Petunia axillaris HOM05D003353 ORTHO05D003751 2.7e-49 201.1 588 28.2
Lalb_Chr02g0160051 Lupinus albus HOM05D003353 ORTHO05D003751 4.6e-49 200.3 368 37.2
CSS0016548 Camellia sinensis var. sinensis HOM05D003353 ORTHO05D003751 1.7e-48 198.4 555 28.1
Os02g0192400 Oryza sativa ssp. japonica HOM05D003353 ORTHO05D003751 3.9e-48 197.2 534 31.6
vmacro16257 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 3.9e-48 197.2 521 29.8
MSTRG.7892 Avicennia marina HOM05D003353 ORTHO05D003751 1.5e-47 195.3 504 30.4
Migut.L01407 Erythranthe guttata HOM05D003353 ORTHO05D003751 2.1e-46 191.4 667 25.2
GSVIVG01032492001 Vitis vinifera HOM05D003353 ORTHO05D003751 2.1e-46 191.4 577 28.4
SEGI_35053 Sequoiadendron giganteum HOM05D003353 ORTHO05D003751 8.1e-46 189.5 570 28.8
Rhsim12G0121100 Rhododendron simsii HOM05D003353 ORTHO05D003751 1.4e-45 188.7 591 28.3
Nitab4.5_0000113g0210 Nicotiana tabacum HOM05D003353 ORTHO05D003751 1.8e-45 188.3 594 28.3
Sopen05g001650 Solanum pennellii HOM05D003353 ORTHO05D003751 6.9e-45 186.4 595 28.4
HPP92_008854 Vanilla planifolia HOM05D003353 ORTHO05D003751 1.7e-43 181.8 595 28.7
CDE10G0339 Ceratophyllum demersum HOM05D003353 ORTHO05D003751 2.2e-43 181.4 572 28.3
CAN.G1420.2 Capsicum annuum HOM05D003353 ORTHO05D003751 3.2e-42 177.6 584 28.1
SGA_v2.0_scaffold165G38252 Striga asiatica HOM05D003353 ORTHO05D003751 1.6e-41 175.3 673 26.0
HanXRQChr12g0368561 Helianthus annuus HOM05D003353 ORTHO05D003751 2.1e-41 174.9 536 29.1
GSVIVG01020232001 Vitis vinifera HOM05D003353 ORTHO05D003751 6.0e-41 173.3 613 27.9
Lsat_1_v5_gn_8_157680 Lactuca sativa HOM05D003353 ORTHO05D003751 1.3e-40 172.2 537 29.6
DCAR_031098 Daucus carota HOM05D003353 ORTHO05D003751 2.3e-40 171.4 603 27.5
Oeu056394.4 Olea europaea HOM05D003353 ORTHO05D003751 5.6e-39 166.8 559 28.3
Oeu003445.1 Olea europaea HOM05D003353 ORTHO05D003751 4.2e-34 150.6 567 25.7
DCAR_007093 Daucus carota HOM05D003353 ORTHO05D003751 4.6e-33 147.1 570 25.8
Aqoxy3G00985 Aquilegia oxysepala HOM05D003353 ORTHO05D003751 4.3e-31 140.6 554 27.4
ECA233G2073 Erigeron canadensis HOM05D003353 ORTHO05D003751 3.1e-29 134.4 536 28.5
BNapus_Darmor_BZH_scaffold_119p00030 Brassica napus HOM05D003353 ORTHO05D003751 1.5e-23 115.5 236 34.3
BNapus_Darmor_BZH_scaffold_97p00400 Brassica napus HOM05D003353 ORTHO05D003751 1.5e-23 115.5 236 34.3
Nn4g22008 Nelumbo nucifera HOM05D003353 ORTHO05D003751 5.7e-23 113.6 210 35.2
Nn4g22811 Nelumbo nucifera HOM05D003353 ORTHO05D003751 2.4e-21 108.2 223 33.6
HanXRQChr09g0266041 Helianthus annuus HOM05D003353 ORTHO05D003751 1.1e-15 89.4 234 24.4
Pp3c6_8120 Physcomitrium patens HOM05D003353 ORTHO05D003751 4.8e-14 84.0 257 28.0
unitig_26.g10339 Utricularia gibba HOM05D003353 ORTHO05D003751 4.8e-14 84.0 192 31.8
Pp3c5_19640 Physcomitrium patens HOM05D003353 ORTHO05D003751 4.5e-12 77.4 318 22.6
unitig_26.g10338 Utricularia gibba HOM05D003353 ORTHO05D003751 1.3e-11 75.9 150 30.0
Pp3c2_35750 Physcomitrium patens HOM05D003353 ORTHO05D003751 3.8e-11 74.3 380 22.6
Mapoly0064s0056 Marchantia polymorpha HOM05D003353 ORTHO05D003751 5.0e-11 73.9 702 20.4
Pp3c1_860 Physcomitrium patens HOM05D003353 ORTHO05D003751 1.2e-09 69.3 306 22.5
Lsat_1_v5_gn_4_6960 Lactuca sativa HOM05D003353 ORTHO05D003751 2.1e-09 68.6 192 25.5
HanXRQChr17g0569791 Helianthus annuus HOM05D003353 ORTHO05D003751 4.7e-09 67.4 504 22.6
arahy.Tifrunner.gnm1.ann1.YCXM3R Arachis hypogaea HOM05D003353 ORTHO05D003751 1.8e-08 65.5 81 44.4
Migut.H00129 Erythranthe guttata HOM05D003353 ORTHO05D003751 3.0e-08 64.7 112 36.6
Migut.H00131 Erythranthe guttata HOM05D003353 ORTHO05D003751 4.4e-07 60.8 112 35.7
Migut.H00132 Erythranthe guttata HOM05D003353 ORTHO05D003751 4.8e-06 57.4 108 36.1
Psat0s1953g0200 Pisum sativum HOM05D003353 ORTHO05D003751 8.2e-06 56.6 69 44.9


User provided reference genes

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