Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 0.0e+00 1224.5 624 100.0
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.9e-257 892.5 675 70.7
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 2.1e-256 889.0 675 70.2
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 2.1e-256 889.0 675 70.8
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 4.6e-256 887.9 675 70.2
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 1.7e-255 885.9 673 69.7
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 5.1e-255 884.4 676 70.3
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 1.9e-254 882.5 675 69.5
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 2.5e-254 882.1 675 70.2
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 2.5e-254 882.1 675 69.8
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 4.3e-254 881.3 675 69.8
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 7.3e-254 880.6 675 70.1
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 1.2e-253 879.8 676 69.5
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 1.2e-253 879.8 675 69.6
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 1.2e-253 879.8 676 70.0
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 3.6e-253 878.2 676 69.8
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 8.1e-253 877.1 676 70.0
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 1.1e-252 876.7 675 69.5
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 8.9e-252 873.6 675 69.8
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 1.2e-251 873.2 675 70.1
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 1.2e-251 873.2 675 68.6
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 2.6e-251 872.1 679 69.8
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 3.4e-251 871.7 675 69.6
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 3.4e-251 871.7 675 68.9
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 3.4e-251 871.7 675 69.6
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 4.4e-251 871.3 675 68.9
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 4.4e-251 871.3 675 68.9
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 4.4e-251 871.3 675 68.9
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 5.8e-251 870.9 675 69.5
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 5.8e-251 870.9 675 69.3
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 7.6e-251 870.5 677 69.9
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 7.6e-251 870.5 676 68.5
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 1.3e-250 869.8 675 69.0
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 1.7e-250 869.4 675 68.7
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 1.7e-250 869.4 675 68.7
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 1.7e-250 869.4 675 68.7
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 2.2e-250 869.0 675 68.7
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 2.9e-250 868.6 684 68.7
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 4.9e-250 867.8 675 68.4
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 4.9e-250 867.8 675 68.6
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 1.9e-249 865.9 675 68.4
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 4.2e-249 864.8 675 69.0
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 7.1e-249 864.0 675 67.7
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 7.1e-249 864.0 704 67.0
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 9.2e-249 863.6 675 68.1
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 1.6e-248 862.8 697 67.1
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 1.6e-248 862.8 676 68.8
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 1.6e-248 862.8 675 68.4
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 2.1e-248 862.4 675 67.7
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 2.1e-248 862.4 675 68.4
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 3.5e-248 861.7 675 67.4
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 2.3e-247 859.0 675 67.3
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 2.3e-247 859.0 676 67.6
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 2.3e-247 859.0 675 68.7
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 3.0e-247 858.6 675 67.1
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 5.1e-247 857.8 667 68.2
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 5.1e-247 857.8 701 66.5
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 8.7e-247 857.1 679 69.1
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 1.9e-246 855.9 675 67.0
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.9e-246 855.9 680 67.9
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 2.5e-246 855.5 675 67.0
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 2.5e-246 855.5 675 67.0
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 3.3e-246 855.1 675 68.0
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.3e-246 855.1 676 67.6
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 5.6e-246 854.4 675 68.6
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 7.3e-246 854.0 675 67.4
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 1.6e-245 852.8 676 67.0
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 2.1e-245 852.4 677 66.9
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 2.1e-245 852.4 676 68.9
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 3.6e-245 851.7 676 67.3
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 4.7e-245 851.3 675 67.3
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 6.2e-245 850.9 676 67.3
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 8.1e-245 850.5 676 67.5
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 1.4e-244 849.7 693 66.2
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 2.4e-244 849.0 675 68.3
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 4.0e-244 848.2 675 66.4
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 9.0e-244 847.0 672 67.6
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.5e-243 846.3 658 68.4
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 1.5e-243 846.3 675 67.9
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 3.4e-243 845.1 676 67.2
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 5.8e-243 844.3 677 66.8
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 7.6e-243 844.0 675 67.7
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 1.3e-242 843.2 676 67.6
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 1.7e-242 842.8 676 67.2
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 1.7e-242 842.8 674 67.7
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 2.2e-242 842.4 677 67.8
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 6.4e-242 840.9 676 66.1
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 1.1e-241 840.1 676 67.2
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 7.1e-241 837.4 750 61.5
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 1.6e-240 836.3 709 64.0
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 2.7e-240 835.5 675 65.6
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 3.5e-240 835.1 676 67.0
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 1.0e-239 833.6 694 65.7
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 6.9e-236 820.8 721 62.0
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 1.4e-233 813.1 694 63.7
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 4.2e-233 811.6 675 64.3
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 1.8e-231 806.2 645 66.8
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 1.1e-230 803.5 677 63.4
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 2.8e-229 798.9 707 61.0
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 2.4e-228 795.8 702 62.0
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 7.9e-216 754.2 680 60.1
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 7.9e-216 754.2 680 60.1
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 9.7e-214 747.3 639 63.8
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 3.4e-211 738.8 599 66.9
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 5.9e-211 738.0 679 58.5
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 1.0e-210 737.3 599 66.1
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 5.5e-209 731.5 678 58.3
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 2.7e-208 729.2 698 56.3
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 6.7e-207 724.5 591 66.0
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.7e-194 683.3 558 66.1
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 5.5e-193 678.3 684 57.2
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 8.8e-191 671.0 573 62.7
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 9.1e-188 661.0 484 72.1
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 5.5e-185 651.7 598 60.7
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.0e-178 630.9 674 51.3
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.2e-171 607.4 467 69.0
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 2.8e-165 586.3 674 48.1
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.6e-152 543.9 403 72.5
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 6.6e-138 495.4 424 63.2
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 1.0e-122 444.9 720 38.8
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 5.4e-116 422.5 763 34.7
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 1.3e-114 417.9 358 60.9
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 3.8e-109 399.8 328 63.7
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 9.7e-97 358.6 250 75.2
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 3.6e-91 340.1 243 72.4
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 2.3e-90 337.4 242 71.9
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 4.8e-88 329.7 252 67.9
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 6.3e-88 329.3 219 78.1
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 3.1e-87 327.0 241 69.7
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 1.1e-81 308.5 744 32.4
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 8.2e-80 302.4 236 66.5
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.2e-66 256.5 205 65.4
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 8.8e-66 255.8 201 70.6
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 7.3e-52 209.5 143 71.3
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.6e-51 208.4 200 61.0
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 2.6e-49 201.1 172 62.8
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 9.8e-49 199.1 130 75.4
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 8.3e-48 196.1 199 55.3
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 1.3e-45 188.7 214 50.0
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 6.6e-45 186.4 114 83.3
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 1.0e-42 179.1 136 67.6
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.6e-41 174.5 113 78.8
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 8.6e-37 159.5 102 78.4
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 4.7e-35 153.7 167 54.5
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 5.2e-34 150.2 119 63.0
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-33 148.7 105 60.0
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.1e-31 142.5 147 53.7
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.1e-28 132.5 497 26.4
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 2.1e-27 128.3 86 72.1
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.7e-24 118.6 139 48.2
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.3e-20 104.0 57 86.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.3e-16 92.4 75 66.7
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 1.7e-16 92.0 59 67.8
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.7e-16 92.0 77 62.3
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 3.8e-16 90.9 62 71.0
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 6.4e-16 90.1 65 73.8
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 3.2e-15 87.8 58 74.1
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.0e-13 81.3 51 80.4
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 1.9e-12 78.6 51 76.5
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.9e-12 78.6 88 55.7
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 2.5e-12 78.2 56 69.6
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 5.6e-12 77.0 86 51.2
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 2.1e-11 75.1 56 66.1
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 2.1e-11 75.1 56 66.1
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 8.1e-11 73.2 43 74.4
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 3.8e-08 64.3 39 74.4


User provided reference genes

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