Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 1.0e-198 696.8 424 100.0
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 3.3e-64 250.0 465 40.4
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 1.4e-62 244.6 454 41.6
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 3.1e-62 243.4 461 47.9
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 4.0e-62 243.0 450 40.9
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 6.9e-62 242.3 450 44.4
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 2.0e-61 240.7 464 41.6
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 3.4e-61 240.0 462 46.5
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 6.4e-60 235.7 431 39.7
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 1.4e-59 234.6 417 48.2
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 1.9e-59 234.2 416 41.8
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 2.4e-59 233.8 463 38.0
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 2.4e-59 233.8 451 43.7
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 2.1e-58 230.7 422 41.7
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 2.3e-57 227.3 417 44.8
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 3.0e-57 226.9 421 41.3
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 1.5e-56 224.6 459 41.4
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 1.9e-56 224.2 445 45.6
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 1.9e-56 224.2 410 44.9
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 3.3e-56 223.4 427 42.4
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 3.3e-56 223.4 427 42.4
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 7.3e-56 222.2 403 40.9
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 9.6e-56 221.9 435 39.8
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 9.6e-56 221.9 417 39.8
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 1.3e-55 221.5 440 41.4
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.3e-55 221.5 417 41.5
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.6e-55 221.1 453 39.1
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 2.1e-55 220.7 432 49.3
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 2.1e-55 220.7 451 48.1
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 3.6e-55 219.9 457 38.5
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 3.6e-55 219.9 432 38.0
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 3.6e-55 219.9 467 37.5
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 4.8e-55 219.5 433 42.7
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 4.8e-55 219.5 414 44.4
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 6.2e-55 219.2 438 38.6
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 8.1e-55 218.8 464 43.8
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 8.1e-55 218.8 441 37.9
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 1.4e-54 218.0 457 37.0
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 2.4e-54 217.2 419 39.6
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 2.4e-54 217.2 434 38.5
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 3.1e-54 216.9 470 37.7
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 3.1e-54 216.9 440 45.2
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 3.1e-54 216.9 437 40.7
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 5.3e-54 216.1 427 38.2
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 6.9e-54 215.7 459 36.4
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 9.0e-54 215.3 431 41.8
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 1.2e-53 214.9 445 40.7
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 1.2e-53 214.9 429 41.5
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 1.5e-53 214.5 433 39.3
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 2.6e-53 213.8 430 37.7
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 3.4e-53 213.4 458 46.5
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 4.5e-53 213.0 416 43.0
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 9.9e-53 211.8 415 44.8
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 9.9e-53 211.8 463 37.4
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 1.7e-52 211.1 436 39.2
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 2.2e-52 210.7 496 41.5
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 2.9e-52 210.3 437 46.7
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 4.9e-52 209.5 486 42.0
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 4.9e-52 209.5 478 41.0
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 1.1e-51 208.4 415 44.1
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.4e-51 208.0 452 38.3
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 1.9e-51 207.6 429 37.3
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 2.4e-51 207.2 448 38.4
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 2.4e-51 207.2 459 36.4
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 3.2e-51 206.8 458 42.4
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 3.2e-51 206.8 440 37.5
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 5.4e-51 206.1 448 45.3
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 7.1e-51 205.7 444 43.2
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 7.1e-51 205.7 423 37.4
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 9.3e-51 205.3 436 38.8
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 9.3e-51 205.3 495 39.6
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 1.6e-50 204.5 431 40.1
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 2.1e-50 204.1 446 43.5
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 3.5e-50 203.4 437 44.6
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 6.0e-50 202.6 427 41.0
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 7.9e-50 202.2 471 34.8
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 7.9e-50 202.2 488 39.3
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 1.0e-49 201.8 448 42.9
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.3e-49 201.4 440 38.0
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 1.8e-49 201.1 438 39.5
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 2.3e-49 200.7 456 43.2
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 3.0e-49 200.3 429 41.3
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 3.0e-49 200.3 442 44.8
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 3.9e-49 199.9 474 35.9
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 1.1e-48 198.4 464 43.1
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.5e-48 198.0 432 41.0
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.9e-48 197.6 424 36.8
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 2.5e-48 197.2 445 36.4
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 2.5e-48 197.2 521 39.7
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 4.3e-48 196.4 468 35.7
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 5.6e-48 196.1 470 34.0
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 5.6e-48 196.1 479 42.6
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 7.4e-48 195.7 433 39.5
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 9.6e-48 195.3 478 35.4
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 9.6e-48 195.3 407 38.3
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.3e-47 194.9 439 36.7
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 1.6e-47 194.5 463 38.9
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 2.8e-47 193.7 445 36.9
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 4.8e-47 193.0 444 35.8
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 6.2e-47 192.6 417 38.1
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 1.1e-46 191.8 464 36.6
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.4e-46 191.4 421 37.3
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 1.4e-46 191.4 462 44.4
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 1.8e-46 191.0 446 41.7
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.8e-46 191.0 434 36.2
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 3.1e-46 190.3 462 38.5
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 3.1e-46 190.3 457 44.0
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 4.0e-46 189.9 451 35.9
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 4.0e-46 189.9 436 45.4
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 5.3e-46 189.5 421 38.0
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 5.3e-46 189.5 452 33.8
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 5.3e-46 189.5 464 39.0
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 6.9e-46 189.1 448 35.5
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 9.0e-46 188.7 456 46.5
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 9.0e-46 188.7 436 34.6
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 1.5e-45 188.0 433 36.3
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 2.6e-45 187.2 426 36.2
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 3.4e-45 186.8 433 36.0
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 3.4e-45 186.8 497 40.2
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 3.4e-45 186.8 445 45.2
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 4.5e-45 186.4 477 44.2
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 5.8e-45 186.0 449 35.4
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 5.8e-45 186.0 443 35.7
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 7.6e-45 185.7 434 35.7
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 7.6e-45 185.7 434 35.7
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 7.6e-45 185.7 384 38.5
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 1.7e-44 184.5 404 42.3
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 2.2e-44 184.1 474 33.3
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 4.9e-44 183.0 475 38.5
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 4.9e-44 183.0 441 41.0
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 1.4e-43 181.4 474 34.6
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 4.2e-43 179.9 367 37.9
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 7.1e-43 179.1 454 33.5
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 1.0e-41 175.3 461 43.2
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 1.0e-41 175.3 449 42.5
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 1.3e-41 174.9 483 37.1
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 8.7e-41 172.2 236 48.7
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 4.3e-40 169.9 463 32.8
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 9.6e-40 168.7 486 32.5
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 1.3e-39 168.3 421 35.9
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 1.4e-38 164.9 450 35.1
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 1.8e-38 164.5 237 46.8
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 4.9e-36 156.4 413 36.6
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 6.5e-36 156.0 322 38.2
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 1.4e-35 154.8 416 38.9
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 1.4e-35 154.8 461 33.0
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 2.1e-34 151.0 430 34.4
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 7.9e-34 149.1 411 35.3
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 7.9e-34 149.1 411 35.3
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 2.3e-33 147.5 411 35.0
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 3.1e-30 137.1 162 51.2
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 1.0e-28 132.1 313 35.1
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.1e-24 118.6 428 31.5
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 2.2e-23 114.4 328 33.2
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 2.8e-23 114.0 449 35.0
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 2.0e-21 107.8 134 46.3
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 3.2e-19 100.5 447 34.7
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 5.1e-17 93.2 84 57.1
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 4.4e-16 90.1 172 34.9
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 3.7e-15 87.0 105 41.9
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 2.4e-14 84.3 106 47.2
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 8.5e-12 75.9 136 36.8
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 5.5e-11 73.2 167 32.3
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 2.7e-10 70.9 90 44.4
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 1.4e-09 68.6 90 46.7
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 8.8e-09 65.9 118 41.5
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 3.3e-08 63.9 118 41.5
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 3.3e-08 63.9 118 41.5
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 5.7e-08 63.2 117 37.6
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 7.4e-08 62.8 136 36.0
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 2.2e-07 61.2 131 39.7
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 2.8e-07 60.8 116 41.4
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 3.7e-07 60.5 96 44.8


User provided reference genes

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