Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI21342 Sapria himalayana HOM05D003391 ORTHO05D005563 5.2e-298 1026.9 513 100.0
Manes.01G037700 Manihot esculenta HOM05D003391 ORTHO05D005563 5.7e-180 634.8 447 73.8
CANSAT64G0651 Cannabis sativa HOM05D003391 ORTHO05D005563 3.9e-176 622.1 470 69.6
Prupe.3G191700 Prunus persica HOM05D003391 ORTHO05D005563 1.9e-175 619.8 448 72.5
Glyma.15G124200 Glycine max HOM05D003391 ORTHO05D005563 7.3e-175 617.8 472 69.3
Medtr2g028270 Medicago truncatula HOM05D003391 ORTHO05D005563 7.3e-175 617.8 471 69.6
TWI74G0249 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 9.5e-175 617.5 448 71.4
Lalb_Chr18g0057621 Lupinus albus HOM05D003391 ORTHO05D005563 1.2e-174 617.1 471 69.4
QL04p065456 Quercus lobata HOM05D003391 ORTHO05D005563 1.2e-174 617.1 471 69.4
Glyma.09G018300 Glycine max HOM05D003391 ORTHO05D005563 2.8e-174 615.9 470 69.6
VMungo0540G0836 Vigna mungo HOM05D003391 ORTHO05D005563 2.8e-174 615.9 471 69.6
Potri.016G023000 Populus trichocarpa HOM05D003391 ORTHO05D005563 8.0e-174 614.4 447 71.4
MD09G1135000 Malus domestica HOM05D003391 ORTHO05D005563 1.0e-173 614.0 471 69.0
TPR.G10474 Trifolium pratense HOM05D003391 ORTHO05D005563 1.0e-173 614.0 471 69.4
Phvul.006G134000 Phaseolus vulgaris HOM05D003391 ORTHO05D005563 1.4e-173 613.6 470 69.4
Cfa018226 Carpinus fangiana HOM05D003391 ORTHO05D005563 1.8e-173 613.2 471 69.9
Gohir.A08G160766 Gossypium hirsutum HOM05D003391 ORTHO05D005563 2.3e-173 612.8 470 68.5
arahy.Tifrunner.gnm1.ann1.635YAA Arachis hypogaea HOM05D003391 ORTHO05D005563 4.0e-173 612.1 472 69.3
arahy.Tifrunner.gnm1.ann1.QTWQ8J Arachis hypogaea HOM05D003391 ORTHO05D005563 4.0e-173 612.1 472 69.3
Gorai.004G190000 Gossypium raimondii HOM05D003391 ORTHO05D005563 1.2e-172 610.5 470 68.1
Gohir.D08G181000 Gossypium hirsutum HOM05D003391 ORTHO05D005563 2.0e-172 609.8 470 68.1
MD17G1124000 Malus domestica HOM05D003391 ORTHO05D005563 3.4e-172 609.0 471 68.8
Atru.chr13.1465 Acer truncatum HOM05D003391 ORTHO05D005563 4.4e-172 608.6 448 71.0
Lj6g0008612 Lotus japonicus HOM05D003391 ORTHO05D005563 4.4e-172 608.6 471 68.6
Eucgr.G02677 Eucalyptus grandis HOM05D003391 ORTHO05D005563 5.8e-172 608.2 470 68.1
Cpa.g.sc122.39 Carica papaya HOM05D003391 ORTHO05D005563 7.5e-172 607.8 474 69.2
TWI77G0821 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 7.5e-172 607.8 471 67.5
Sed0012933 Sechium edule HOM05D003391 ORTHO05D005563 9.8e-172 607.4 472 68.9
MELO3C026391.2 Cucumis melo HOM05D003391 ORTHO05D005563 4.9e-171 605.1 473 68.9
CsaV3_4G032190 Cucumis sativus L. HOM05D003391 ORTHO05D005563 4.9e-171 605.1 473 68.9
PGR042G2316 Punica granatum HOM05D003391 ORTHO05D005563 4.9e-171 605.1 470 68.1
Thecc.03G235800 Theobroma cacao HOM05D003391 ORTHO05D005563 8.3e-171 604.4 470 67.7
FvH4_6g40130 Fragaria vesca HOM05D003391 ORTHO05D005563 1.9e-170 603.2 447 70.7
RcHm_v2.0_Chr2g0154761 Rosa chinensis HOM05D003391 ORTHO05D005563 3.2e-170 602.4 449 70.4
CiPaw.10G102000 Carya illinoinensis HOM05D003391 ORTHO05D005563 4.1e-170 602.1 470 67.2
FAN02G4219 Fragaria x ananassa HOM05D003391 ORTHO05D005563 9.2e-170 600.9 448 70.8
Aa31LG10G3790 Aethionema arabicum HOM05D003391 ORTHO05D005563 1.2e-169 600.5 471 68.6
THA.LOC104809239 Tarenaya hassleriana HOM05D003391 ORTHO05D005563 1.6e-169 600.1 471 68.4
Duzib068G0467 Durio zibethinus HOM05D003391 ORTHO05D005563 7.8e-169 597.8 446 70.0
FAN09G1714 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.0e-168 597.4 449 70.8
Duzib084G0647 Durio zibethinus HOM05D003391 ORTHO05D005563 6.6e-168 594.7 470 67.0
GSVIVG01016094001 Vitis vinifera HOM05D003391 ORTHO05D005563 1.5e-167 593.6 471 67.5
FAN05G0705 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.9e-167 593.2 448 70.3
Hma1.2p1_0583F.1_g183000 Hydrangea macrophylla HOM05D003391 ORTHO05D005563 1.9e-167 593.2 471 67.5
PSO675G3205 Papaver somniferum HOM05D003391 ORTHO05D005563 3.3e-167 592.4 472 66.7
Dinv10208 Davidia involucrata HOM05D003391 ORTHO05D005563 7.3e-167 591.3 470 66.8
PSO541G1880 Papaver somniferum HOM05D003391 ORTHO05D005563 2.1e-166 589.7 472 66.3
FAN14G1902 Fragaria x ananassa HOM05D003391 ORTHO05D005563 1.1e-165 587.4 478 66.1
AUR62023891 Chenopodium quinoa HOM05D003391 ORTHO05D005563 5.2e-165 585.1 471 66.9
EL10Ac9g21140 Beta vulgaris HOM05D003391 ORTHO05D005563 4.4e-164 582.0 471 66.5
Sopen04g019460 Solanum pennellii HOM05D003391 ORTHO05D005563 7.5e-164 581.3 473 66.0
ClCG11G016680 Citrullus lanatus HOM05D003391 ORTHO05D005563 9.8e-164 580.9 445 69.2
Sp1g37350 Schrenkiella parvula HOM05D003391 ORTHO05D005563 1.7e-163 580.1 472 65.7
Migut.F02007 Erythranthe guttata HOM05D003391 ORTHO05D005563 2.9e-163 579.3 447 68.5
SalBow4G0334 Salvia bowleyana HOM05D003391 ORTHO05D005563 2.9e-163 579.3 451 67.8
TAR626G0891 Trochodendron aralioides HOM05D003391 ORTHO05D005563 2.9e-163 579.3 471 66.0
CARHR040530 Cardamine hirsuta HOM05D003391 ORTHO05D005563 3.7e-163 578.9 471 65.6
Solyc04g049490.3 Solanum lycopersicum HOM05D003391 ORTHO05D005563 4.9e-163 578.6 473 65.5
Eucgr.L01917 Eucalyptus grandis HOM05D003391 ORTHO05D005563 6.4e-163 578.2 450 67.3
AL1G58160 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 1.1e-162 577.4 471 65.8
MSTRG.9187 Avicennia marina HOM05D003391 ORTHO05D005563 2.4e-162 576.2 447 67.8
Peaxi162Scf00072g00087 Petunia axillaris HOM05D003391 ORTHO05D005563 2.4e-162 576.2 471 65.8
MSTRG.27454 Avicennia marina HOM05D003391 ORTHO05D005563 4.1e-162 575.5 447 68.0
Cc06_g14340 Coffea canephora HOM05D003391 ORTHO05D005563 4.1e-162 575.5 470 66.4
AT1G50500 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 1.2e-161 573.9 471 65.4
BcaB02g11154 Brassica carinata HOM05D003391 ORTHO05D005563 1.2e-161 573.9 471 65.6
BcaC01g01234 Brassica carinata HOM05D003391 ORTHO05D005563 1.6e-161 573.5 471 65.2
A05p20100 Brassica napus HOM05D003391 ORTHO05D005563 1.6e-161 573.5 471 65.6
C05p33590 Brassica napus HOM05D003391 ORTHO05D005563 1.6e-161 573.5 471 65.6
MBI18_g28220_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 1.6e-161 573.5 474 65.8
Aqoxy3G00251 Aquilegia oxysepala HOM05D003391 ORTHO05D005563 2.1e-161 573.2 470 65.3
CAN.G466.12 Capsicum annuum HOM05D003391 ORTHO05D005563 2.1e-161 573.2 473 65.3
CAN.G998.14 Capsicum annuum HOM05D003391 ORTHO05D005563 7.8e-161 571.2 473 65.1
Nitab4.5_0007706g0020 Nicotiana tabacum HOM05D003391 ORTHO05D005563 1.7e-160 570.1 443 68.2
BcaC05g27411 Brassica carinata HOM05D003391 ORTHO05D005563 3.0e-160 569.3 471 65.4
Ca_11369_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 3.0e-160 569.3 471 65.8
Ca_30786_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 3.0e-160 569.3 471 65.8
Thhalv10011301m.g Eutrema salsugineum HOM05D003391 ORTHO05D005563 3.9e-160 568.9 471 64.8
Nn7g37683 Nelumbo nucifera HOM05D003391 ORTHO05D005563 3.9e-160 568.9 473 64.5
SGA_v2.0_scaffold62G21434 Striga asiatica HOM05D003391 ORTHO05D005563 3.9e-160 568.9 464 65.7
CSS0020230 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 1.1e-159 567.4 448 66.1
Carub.0001s3957 Capsella rubella HOM05D003391 ORTHO05D005563 1.1e-159 567.4 470 64.7
HanXRQChr04g0122221 Helianthus annuus HOM05D003391 ORTHO05D005563 1.1e-159 567.4 447 65.5
Haze_17876 Corylus avellana HOM05D003391 ORTHO05D005563 1.5e-159 567.0 472 65.7
Migut.F01784 Erythranthe guttata HOM05D003391 ORTHO05D005563 1.9e-159 566.6 447 66.4
CDE02G0628 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 5.6e-159 565.1 450 66.2
Lsat_1_v5_gn_7_7561 Lactuca sativa HOM05D003391 ORTHO05D005563 7.3e-159 564.7 447 65.5
C03p89680 Brassica napus HOM05D003391 ORTHO05D005563 3.6e-158 562.4 442 67.6
vmacro13793 Vaccinium macrocarpon HOM05D003391 ORTHO05D005563 3.6e-158 562.4 447 64.7
Actinidia37789 Actinidia chinensis HOM05D003391 ORTHO05D005563 6.8e-157 558.1 424 68.4
Sc24g0003350 Simmondsia chinensis HOM05D003391 ORTHO05D005563 6.8e-157 558.1 451 65.4
ATR1098G037 Amborella trichopoda HOM05D003391 ORTHO05D005563 1.5e-156 557.0 472 63.3
Sabra16G0023000 Salix brachista HOM05D003391 ORTHO05D005563 2.0e-156 556.6 447 66.2
Sabra16G0029200 Salix brachista HOM05D003391 ORTHO05D005563 2.0e-156 556.6 447 66.2
Zm00001eb144220 Zea mays HOM05D003391 ORTHO05D005563 2.0e-156 556.6 450 65.6
ECA240G2134 Erigeron canadensis HOM05D003391 ORTHO05D005563 2.6e-156 556.2 447 63.8
ECA236G2623 Erigeron canadensis HOM05D003391 ORTHO05D005563 3.4e-156 555.8 447 64.4
COL.COLO4_06714 Corchorus olitorius HOM05D003391 ORTHO05D005563 1.1e-151 540.8 470 62.3
Oeu033843.4 Olea europaea HOM05D003391 ORTHO05D005563 3.3e-151 539.3 503 59.6
CSS0023421 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 1.4e-149 533.9 459 62.3
HanXRQChr03g0093781 Helianthus annuus HOM05D003391 ORTHO05D005563 4.4e-148 528.9 502 58.0
AUR62022296 Chenopodium quinoa HOM05D003391 ORTHO05D005563 5.8e-148 528.5 471 62.2
Hund02122 Selenicereus undatus HOM05D003391 ORTHO05D005563 1.3e-147 527.3 472 62.1
Lalb_Chr15g0088521 Lupinus albus HOM05D003391 ORTHO05D005563 6.4e-147 525.0 420 66.2
DCAR_003077 Daucus carota HOM05D003391 ORTHO05D005563 1.6e-145 520.4 472 60.8
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 3.6e-142 509.2 475 59.4
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 2.4e-141 506.5 446 61.2
unitig_899.g14436 Utricularia gibba HOM05D003391 ORTHO05D005563 2.4e-141 506.5 453 60.5
Lj7A654G26 Lonicera japonica HOM05D003391 ORTHO05D005563 4.9e-139 498.8 420 63.6
Ah.01g004390 Amaranthus hybridus HOM05D003391 ORTHO05D005563 5.1e-136 488.8 379 67.8
Mapoly0030s0152 Marchantia polymorpha HOM05D003391 ORTHO05D005563 8.7e-136 488.0 451 57.4
BolC3t21285H Brassica oleracea HOM05D003391 ORTHO05D005563 1.1e-133 481.1 382 67.0
SMO196G0220 Selaginella moellendorffii HOM05D003391 ORTHO05D005563 2.9e-131 473.0 450 56.4
HPP92_006006 Vanilla planifolia HOM05D003391 ORTHO05D005563 3.8e-131 472.6 464 58.0
Ciclev10029974m.g Citrus clementina HOM05D003391 ORTHO05D005563 6.4e-131 471.9 394 65.7
Pp3c8_8190 Physcomitrium patens HOM05D003391 ORTHO05D005563 7.1e-130 468.4 454 55.1
Pp3c24_4920 Physcomitrium patens HOM05D003391 ORTHO05D005563 1.0e-128 464.5 448 54.9
Rhsim11G0087500 Rhododendron simsii HOM05D003391 ORTHO05D005563 3.0e-128 463.0 414 60.4
Atru.chr13.1440 Acer truncatum HOM05D003391 ORTHO05D005563 8.7e-128 461.5 422 61.8
Nitab4.5_0000575g0140 Nicotiana tabacum HOM05D003391 ORTHO05D005563 1.1e-127 461.1 446 58.5
CBR_g35042 Chara braunii HOM05D003391 ORTHO05D005563 1.6e-121 440.7 523 49.1
Oeu030440.3 Olea europaea HOM05D003391 ORTHO05D005563 6.7e-120 435.3 373 61.9
AagrBONN_evm.TU.Sc2ySwM_228.283 Anthoceros agrestis HOM05D003391 ORTHO05D005563 4.1e-117 426.0 446 51.8
arahy.Tifrunner.gnm1.ann1.MM6MID Arachis hypogaea HOM05D003391 ORTHO05D005563 6.1e-113 412.1 296 73.3
AL1G58810 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 8.7e-112 408.3 429 55.5
BcaB04g17246 Brassica carinata HOM05D003391 ORTHO05D005563 1.1e-111 407.9 422 55.0
PGSC0003DMG401012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 7.4e-111 405.2 326 68.1
Psat1g171000 Pisum sativum HOM05D003391 ORTHO05D005563 1.3e-107 394.4 356 60.1
BolC5t32086H Brassica oleracea HOM05D003391 ORTHO05D005563 6.1e-105 385.6 474 50.4
BraA05t20918Z Brassica rapa HOM05D003391 ORTHO05D005563 3.0e-104 383.3 474 50.4
AL1G58840 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 2.0e-103 380.6 431 51.5
SEGI_14368 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 1.4e-93 347.8 220 77.7
AT1G50970 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 2.2e-86 323.9 356 51.7
PRCOL_00003915 Prasinoderma coloniale HOM05D003391 ORTHO05D005563 6.5e-83 312.4 476 40.1
Psat1g171680 Pisum sativum HOM05D003391 ORTHO05D005563 1.5e-79 301.2 204 77.5
MCO12G450 Micromonas commoda HOM05D003391 ORTHO05D005563 1.1e-69 268.5 511 36.4
Lsat_1_v5_gn_3_133361 Lactuca sativa HOM05D003391 ORTHO05D005563 1.3e-62 245.0 447 39.8
Ca_00789_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 1.2e-60 238.4 228 57.9
Cre06.g259600 Chlamydomonas reinhardtii HOM05D003391 ORTHO05D005563 5.8e-55 219.5 516 30.6
Cfa021970 Carpinus fangiana HOM05D003391 ORTHO05D125001 9.2e-37 159.1 394 31.0
Lsat_1_v5_gn_8_87740 Lactuca sativa HOM05D003391 ORTHO05D019401 3.5e-36 157.1 117 72.6
Lsat_1_v5_gn_6_88940 Lactuca sativa HOM05D003391 ORTHO05D019401 6.0e-36 156.4 119 68.9
SEGI_30207 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 2.8e-33 147.5 89 71.9
PGSC0003DMG402012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 1.1e-26 125.6 121 54.5
Atru.chr7.1997 Acer truncatum HOM05D003391 ORTHO05D019401 3.3e-26 124.0 77 83.1
Os01g0906200 Oryza sativa ssp. japonica HOM05D003391 ORTHO05D005563 4.2e-21 107.1 80 66.2
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 3.6e-17 94.0 125 43.2
Lalb_Chr15g0088511 Lupinus albus HOM05D003391 ORTHO05D019401 1.1e-16 92.4 52 90.4
SEGI_03199 Sequoiadendron giganteum HOM05D003391 ORTHO05D019401 2.4e-16 91.3 54 87.0
Ciclev10028552m.g Citrus clementina HOM05D003391 ORTHO05D005563 4.0e-16 90.5 86 57.0
CARHR292060 Cardamine hirsuta HOM05D003391 ORTHO05D019401 3.8e-14 84.0 50 86.0
Sp1g37750 Schrenkiella parvula HOM05D003391 ORTHO05D372635 4.9e-14 83.6 64 70.3
PGSC0003DMG400018968 Solanum tuberosum HOM05D000002 ORTHO05D009653 4.3e-10 70.5 70 48.6
CARHR183160 Cardamine hirsuta HOM05D003391 ORTHO05D019401 1.1e-08 65.9 41 80.5
TAR237G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.4e-08 65.5 66 51.5
SalBow4G0084 Salvia bowleyana HOM05D000136 ORTHO05D000080 4.0e-08 63.9 54 61.1
TPR.G245 Trifolium pratense HOM05D000002 ORTHO05D000001 2.0e-07 61.6 68 42.6
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 2.6e-07 61.2 66 47.0


User provided reference genes

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