Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18116 Sapria himalayana HOM05D000451 ORTHO05D000351 5.7e-121 437.6 219 100.0
Sabra13G0021500 Salix brachista HOM05D000451 ORTHO05D000351 4.5e-41 172.2 186 56.5
Manes.08G119400 Manihot esculenta HOM05D000451 ORTHO05D000351 5.9e-41 171.8 176 58.0
QL03p012752 Quercus lobata HOM05D000451 ORTHO05D000351 1.0e-40 171.0 183 54.6
Actinidia23649 Actinidia chinensis HOM05D000451 ORTHO05D000351 9.4e-39 164.5 182 53.3
Ciclev10000178m.g Citrus clementina HOM05D000451 ORTHO05D000351 1.2e-38 164.1 179 57.0
Potri.005G026950 Populus trichocarpa HOM05D000451 ORTHO05D000351 2.1e-38 163.3 179 55.3
Potri.013G019000 Populus trichocarpa HOM05D000451 ORTHO05D000351 2.7e-38 162.9 178 56.7
TAR636G3404 Trochodendron aralioides HOM05D000451 ORTHO05D000351 2.7e-38 162.9 180 53.9
CSS0020020 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 3.6e-38 162.5 176 55.1
Dinv40307 Davidia involucrata HOM05D000451 ORTHO05D000351 3.6e-38 162.5 178 55.1
Atru.chr12.1397 Acer truncatum HOM05D000451 ORTHO05D000351 7.9e-38 161.4 177 57.6
Lj2A283T71 Lonicera japonica HOM05D000451 ORTHO05D000351 1.0e-37 161.0 179 55.3
Cpa.g.sc48.77 Carica papaya HOM05D000451 ORTHO05D000351 1.8e-37 160.2 173 57.2
Sabra05G0032300 Salix brachista HOM05D000451 ORTHO05D000351 1.8e-37 160.2 178 56.2
Prupe.6G322900 Prunus persica HOM05D000451 ORTHO05D000351 3.9e-37 159.1 178 53.9
Thecc.05G311000 Theobroma cacao HOM05D000451 ORTHO05D000351 3.9e-37 159.1 183 52.5
Dinv30784 Davidia involucrata HOM05D000451 ORTHO05D000351 5.2e-37 158.7 194 51.5
CANSAT54G0508 Cannabis sativa HOM05D000451 ORTHO05D000351 8.8e-37 157.9 181 54.7
vmacro04981 Vaccinium macrocarpon HOM05D000451 ORTHO05D000351 2.6e-36 156.4 177 55.4
Gorai.004G240400 Gossypium raimondii HOM05D000451 ORTHO05D000351 3.3e-36 156.0 182 51.6
Hund21700 Selenicereus undatus HOM05D000451 ORTHO05D000351 3.3e-36 156.0 182 52.2
Gohir.D08G226400 Gossypium hirsutum HOM05D000451 ORTHO05D000351 7.4e-36 154.8 182 51.1
Duzib177G0338 Durio zibethinus HOM05D000451 ORTHO05D000351 1.7e-35 153.7 181 53.0
MD12G1216600 Malus domestica HOM05D000451 ORTHO05D000351 1.7e-35 153.7 178 51.7
RcHm_v2.0_Chr3g0455331 Rosa chinensis HOM05D000451 ORTHO05D000351 4.8e-35 152.1 177 52.0
SalBow7G0560 Salvia bowleyana HOM05D000451 ORTHO05D000351 6.3e-35 151.8 183 52.5
TWI56G0869 Tripterygium wilfordii HOM05D000451 ORTHO05D000351 6.3e-35 151.8 178 53.4
Nn5g27410 Nelumbo nucifera HOM05D000451 ORTHO05D000351 8.2e-35 151.4 175 51.4
COL.COLO4_10492 Corchorus olitorius HOM05D000451 ORTHO05D000351 1.1e-34 151.0 182 52.7
Haze_04163 Corylus avellana HOM05D000451 ORTHO05D000351 1.8e-34 150.2 185 50.8
MBI19_g13123_MAGBIO Magnolia biondii HOM05D000451 ORTHO05D000351 3.1e-34 149.4 157 52.9
SalBow7G2472 Salvia bowleyana HOM05D000451 ORTHO05D000351 3.1e-34 149.4 177 53.1
Hma1.2p1_1374F.1_g278940 Hydrangea macrophylla HOM05D000451 ORTHO05D000351 5.3e-34 148.7 178 51.1
Nitab4.5_0012439g0010 Nicotiana tabacum HOM05D000451 ORTHO05D000351 5.3e-34 148.7 185 48.1
Lalb_Chr02g0148191 Lupinus albus HOM05D000451 ORTHO05D000351 9.1e-34 147.9 167 53.3
SalBow7G2359 Salvia bowleyana HOM05D000451 ORTHO05D000351 9.1e-34 147.9 177 52.5
Eucgr.B01932 Eucalyptus grandis HOM05D000451 ORTHO05D000351 1.2e-33 147.5 176 48.9
Hma1.2p1_1334F.1_g276260 Hydrangea macrophylla HOM05D000451 ORTHO05D000351 1.2e-33 147.5 178 51.1
TWI36G1320 Tripterygium wilfordii HOM05D000451 ORTHO05D000351 1.2e-33 147.5 182 51.1
Rhsim07G0183200 Rhododendron simsii HOM05D000451 ORTHO05D000351 2.0e-33 146.7 111 70.3
RhsimUnG0135400 Rhododendron simsii HOM05D000451 ORTHO05D000351 2.0e-33 146.7 111 70.3
SGA_v2.0_scaffold159G37650 Striga asiatica HOM05D000451 ORTHO05D000351 2.0e-33 146.7 177 50.8
Cc00_g11530 Coffea canephora HOM05D000451 ORTHO05D000351 3.5e-33 146.0 178 52.2
Nitab4.5_0001820g0020 Nicotiana tabacum HOM05D000451 ORTHO05D000351 1.7e-32 143.7 181 48.1
MSTRG.14692 Avicennia marina HOM05D000451 ORTHO05D000351 8.5e-32 141.4 181 51.9
FAN02G0562 Fragaria x ananassa HOM05D000451 ORTHO05D000351 8.5e-32 141.4 174 51.1
CAN.G1705.8 Capsicum annuum HOM05D000451 ORTHO05D000351 1.1e-31 141.0 175 49.1
ClCG02G015560 Citrullus lanatus HOM05D000451 ORTHO05D000351 1.5e-31 140.6 171 50.9
Migut.H01499 Erythranthe guttata HOM05D000451 ORTHO05D000351 1.9e-31 140.2 179 48.0
PGR083G1052 Punica granatum HOM05D000451 ORTHO05D000351 2.5e-31 139.8 183 50.3
Sopen02g023610 Solanum pennellii HOM05D000451 ORTHO05D000351 2.5e-31 139.8 110 62.7
PGSC0003DMG400022424 Solanum tuberosum HOM05D000451 ORTHO05D000351 3.2e-31 139.4 169 49.7
Ah.06g189590 Amaranthus hybridus HOM05D000451 ORTHO05D000351 4.2e-31 139.0 187 48.1
EL10Ac4g09391 Beta vulgaris HOM05D000451 ORTHO05D000351 2.1e-30 136.7 187 47.1
Oeu026009.3 Olea europaea HOM05D000451 ORTHO05D000351 2.1e-30 136.7 170 50.6
Peaxi162Scf00612g00037 Petunia axillaris HOM05D000451 ORTHO05D000351 2.7e-30 136.3 178 49.4
FAN09G0933 Fragaria x ananassa HOM05D000451 ORTHO05D000351 3.6e-30 136.0 185 48.6
HanXRQChr04g0124461 Helianthus annuus HOM05D000451 ORTHO05D000351 8.0e-30 134.8 176 48.9
MELO3C004232.2 Cucumis melo HOM05D000451 ORTHO05D000351 1.4e-29 134.0 196 44.9
FAN05G0411 Fragaria x ananassa HOM05D000451 ORTHO05D000351 4.0e-29 132.5 185 47.6
FAN09G2708 Fragaria x ananassa HOM05D000451 ORTHO05D000351 4.0e-29 132.5 185 47.6
FAN14G2897 Fragaria x ananassa HOM05D000451 ORTHO05D000351 4.0e-29 132.5 185 47.6
CsaV3_2G006530 Cucumis sativus L. HOM05D000451 ORTHO05D000351 5.2e-29 132.1 180 48.3
ECA236G4774 Erigeron canadensis HOM05D000451 ORTHO05D000351 5.2e-29 132.1 177 49.7
FvH4_6g06290 Fragaria vesca HOM05D000451 ORTHO05D000351 8.8e-29 131.3 185 47.0
THA.LOC104805886 Tarenaya hassleriana HOM05D000451 ORTHO05D000351 2.0e-28 130.2 83 75.9
Sed0014911 Sechium edule HOM05D000451 ORTHO05D000351 2.6e-28 129.8 173 49.1
DCAR_004126 Daucus carota HOM05D000451 ORTHO05D000351 7.5e-28 128.3 180 45.0
ATR0706G211 Amborella trichopoda HOM05D000451 ORTHO05D000351 9.7e-28 127.9 145 49.7
Sc09g0003050 Simmondsia chinensis HOM05D000451 ORTHO05D000351 1.3e-27 127.5 185 45.4
unitig_0.g963 Utricularia gibba HOM05D000451 ORTHO05D000351 1.3e-27 127.5 182 44.0
arahy.Tifrunner.gnm1.ann1.D02CS5 Arachis hypogaea HOM05D000451 ORTHO05D000351 1.7e-27 127.1 129 58.1
arahy.Tifrunner.gnm1.ann1.GQG5UP Arachis hypogaea HOM05D000451 ORTHO05D000351 1.7e-27 127.1 129 58.1
Phvul.007G196300 Phaseolus vulgaris HOM05D000451 ORTHO05D000351 1.7e-27 127.1 87 75.9
Solyc02g078790.4 Solanum lycopersicum HOM05D000451 ORTHO05D000351 1.7e-27 127.1 107 62.6
VMungo0720G2144 Vigna mungo HOM05D000451 ORTHO05D000351 1.7e-27 127.1 87 75.9
CDE08G1685 Ceratophyllum demersum HOM05D000451 ORTHO05D000351 6.3e-27 125.2 165 47.3
Lj5g0007729 Lotus japonicus HOM05D000451 ORTHO05D000351 1.1e-26 124.4 178 46.6
Psat6g149920 Pisum sativum HOM05D000451 ORTHO05D000351 1.1e-26 124.4 171 48.0
CDE02G1342 Ceratophyllum demersum HOM05D000451 ORTHO05D000351 1.4e-26 124.0 171 45.6
Medtr1g083120 Medicago truncatula HOM05D000451 ORTHO05D000351 1.8e-26 123.6 159 49.1
TPR.G6062 Trifolium pratense HOM05D000451 ORTHO05D000351 9.1e-26 121.3 141 50.4
Glyma.20G235300 Glycine max HOM05D000451 ORTHO05D000351 5.9e-25 118.6 133 54.9
Glyma.10G153000 Glycine max HOM05D000451 ORTHO05D000351 7.7e-25 118.2 90 70.0
CARHR008950 Cardamine hirsuta HOM05D000451 ORTHO05D000351 1.7e-24 117.1 79 73.4
PSO478G0113 Papaver somniferum HOM05D000451 ORTHO05D000351 5.0e-24 115.5 170 44.7
Aa31sc588G20 Aethionema arabicum HOM05D000451 ORTHO05D000351 8.5e-24 114.8 171 45.6
Ca_10120_v3 Cicer arietinum L. HOM05D000451 ORTHO05D000351 1.5e-23 114.0 180 42.8
PSO017G6360 Papaver somniferum HOM05D000451 ORTHO05D000351 2.5e-23 113.2 170 44.7
Sp1g07660 Schrenkiella parvula HOM05D000451 ORTHO05D000351 1.6e-22 110.5 163 48.5
Thhalv10006723m.g Eutrema salsugineum HOM05D000451 ORTHO05D000351 2.1e-22 110.2 82 68.3
AL1G19500 Arabidopsis lyrata HOM05D000451 ORTHO05D000351 2.7e-22 109.8 173 45.1
HPP92_002139 Vanilla planifolia HOM05D000451 ORTHO05D000351 2.7e-22 109.8 178 42.7
Aqoxy7G03357 Aquilegia oxysepala HOM05D000451 ORTHO05D000351 3.6e-22 109.4 201 40.3
BcaC07g38480 Brassica carinata HOM05D000451 ORTHO05D000351 4.7e-22 109.0 65 75.4
C08p12430 Brassica napus HOM05D000451 ORTHO05D000351 4.7e-22 109.0 65 75.4
BolC8t48883H Brassica oleracea HOM05D000451 ORTHO05D000351 4.7e-22 109.0 65 75.4
A08p34830 Brassica napus HOM05D000451 ORTHO05D000351 8.0e-22 108.2 62 77.4
BraA08t35394Z Brassica rapa HOM05D000451 ORTHO05D000351 8.0e-22 108.2 62 77.4
Carub.0001s0838 Capsella rubella HOM05D000451 ORTHO05D000351 1.0e-21 107.8 74 73.0
AT1G09060 Arabidopsis thaliana HOM05D000451 ORTHO05D000351 1.8e-21 107.1 177 43.5
SEGI_14001 Sequoiadendron giganteum HOM05D000451 ORTHO05D000351 8.3e-19 98.2 86 58.1
CiPaw.07G020100 Carya illinoinensis HOM05D000451 ORTHO05D000351 1.4e-18 97.4 145 48.3
Zm00001eb394830 Zea mays HOM05D000451 ORTHO05D000351 7.7e-17 91.7 55 72.7
Os03g0346700 Oryza sativa ssp. japonica HOM05D000451 ORTHO05D000351 1.0e-16 91.3 51 76.5
BcaC05g24756 Brassica carinata HOM05D000451 ORTHO05D000351 1.1e-15 87.8 44 81.8
MD04G1202700 Malus domestica HOM05D000451 ORTHO05D000351 1.1e-15 87.8 145 46.2
Lsat_1_v5_gn_7_19961 Lactuca sativa HOM05D000451 ORTHO05D000351 1.5e-15 87.4 134 47.8
TAR365G0596 Trochodendron aralioides HOM05D000451 ORTHO05D000351 2.8e-14 83.2 185 34.1
SEGI_17437 Sequoiadendron giganteum HOM05D000451 ORTHO05D000351 2.6e-12 76.6 59 55.9
SEGI_25356 Sequoiadendron giganteum HOM05D000451 ORTHO05D000351 2.6e-12 76.6 59 55.9
GSVIVG01031115001 Vitis vinifera HOM05D000451 ORTHO05D000351 1.7e-11 73.9 138 44.9
Sp2g06730 Schrenkiella parvula HOM05D000451 ORTHO05D000351 2.8e-11 73.2 89 50.6
SEGI_12800 Sequoiadendron giganteum HOM05D000451 ORTHO05D000351 2.0e-09 67.0 58 46.6
Atru.chr10.2027 Acer truncatum HOM05D000451 ORTHO05D014276 1.7e-08 63.9 58 50.0
Potri.004G032700 Populus trichocarpa HOM05D000451 ORTHO05D000351 1.7e-08 63.9 99 39.4
MBI18_g26026_MAGBIO Magnolia biondii HOM05D000451 ORTHO05D000351 3.8e-08 62.8 69 39.1
GSVIVG01003670001 Vitis vinifera HOM05D000451 ORTHO05D014276 3.8e-08 62.8 72 40.3
Peaxi162Scf01391g00216 Petunia axillaris HOM05D000451 ORTHO05D000351 6.6e-08 62.0 64 46.9
Actinidia11280 Actinidia chinensis HOM05D000451 ORTHO05D000351 1.5e-07 60.8 39 59.0
Sabra11G0028300 Salix brachista HOM05D000451 ORTHO05D000351 1.5e-07 60.8 55 49.1
SEGI_06129 Sequoiadendron giganteum HOM05D000451 ORTHO05D000351 1.5e-07 60.8 59 50.8
CANSAT56G1620 Cannabis sativa HOM05D000451 ORTHO05D000351 1.9e-07 60.5 146 30.8
ClCG01G022420 Citrullus lanatus HOM05D000451 ORTHO05D000351 2.5e-07 60.1 62 46.8
Nn1g03849 Nelumbo nucifera HOM05D000451 ORTHO05D000351 2.5e-07 60.1 57 50.9
COL.COLO4_31627 Corchorus olitorius HOM05D000451 ORTHO05D000351 3.3e-07 59.7 58 44.8
Dinv40468 Davidia involucrata HOM05D000451 ORTHO05D000351 3.3e-07 59.7 43 53.5
Sabra04G0018800 Salix brachista HOM05D000451 ORTHO05D000351 3.3e-07 59.7 59 45.8
Ciclev10018309m.g Citrus clementina HOM05D000451 ORTHO05D000351 4.3e-07 59.3 54 46.3
Duzib160G0721 Durio zibethinus HOM05D000451 ORTHO05D000351 5.6e-07 58.9 59 44.1
Potri.011G041400 Populus trichocarpa HOM05D000451 ORTHO05D000351 5.6e-07 58.9 55 47.3
SEGI_01523 Sequoiadendron giganteum HOM05D000451 ORTHO05D000351 5.6e-07 58.9 64 42.2
Duzib235G0293 Durio zibethinus HOM05D000451 ORTHO05D000351 7.3e-07 58.5 59 44.1
Manes.17G033900 Manihot esculenta HOM05D000451 ORTHO05D000351 7.3e-07 58.5 68 42.6
Dinv19101 Davidia involucrata HOM05D000451 ORTHO05D000351 9.5e-07 58.2 65 47.7
Eucgr.D00753 Eucalyptus grandis HOM05D000451 ORTHO05D000351 9.5e-07 58.2 53 49.1
Migut.H01525 Erythranthe guttata HOM05D000451 ORTHO05D000351 1.2e-06 57.8 48 47.9
HanXRQChr15g0482571 Helianthus annuus HOM05D000451 ORTHO05D000351 1.2e-06 57.8 59 42.4
Lj1C1214T10 Lonicera japonica HOM05D000451 ORTHO05D000351 1.2e-06 57.8 72 36.1
Manes.16G019400 Manihot esculenta HOM05D000451 ORTHO05D000351 1.2e-06 57.8 68 41.2
Rhsim13G0169100 Rhododendron simsii HOM05D000451 ORTHO05D000351 1.2e-06 57.8 65 43.1
Actinidia26986 Actinidia chinensis HOM05D000774 ORTHO05D000602 1.6e-06 57.4 63 39.7
MELO3C007332.2 Cucumis melo HOM05D000451 ORTHO05D000351 1.6e-06 57.4 64 45.3
CsaV3_6G049610 Cucumis sativus L. HOM05D000451 ORTHO05D000351 1.6e-06 57.4 64 45.3
Solyc02g079300.3 Solanum lycopersicum HOM05D000451 ORTHO05D000351 1.6e-06 57.4 63 42.9
Sopen02g024120 Solanum pennellii HOM05D000451 ORTHO05D000351 1.6e-06 57.4 63 42.9
CSS0041812 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 2.1e-06 57.0 54 46.3
Hma1.2p1_1515F.1_g288170 Hydrangea macrophylla HOM05D000451 ORTHO05D000351 2.1e-06 57.0 66 39.4
Nitab4.5_0000649g0130 Nicotiana tabacum HOM05D000451 ORTHO05D000351 2.1e-06 57.0 68 42.6
Nitab4.5_0008924g0030 Nicotiana tabacum HOM05D000451 ORTHO05D000351 2.1e-06 57.0 68 42.6
Thecc.06G201800 Theobroma cacao HOM05D000451 ORTHO05D000351 2.8e-06 56.6 74 40.5
Sed0002365 Sechium edule HOM05D000451 ORTHO05D000351 3.6e-06 56.2 68 38.2
Sed0011802 Sechium edule HOM05D000451 ORTHO05D000351 3.6e-06 56.2 62 43.5
SEGI_20838 Sequoiadendron giganteum HOM05D000771 ORTHO05D001350 3.6e-06 56.2 51 45.1
SEGI_27059 Sequoiadendron giganteum HOM05D033726 ORTHO05D014797 4.7e-06 55.8 49 49.0
vmacro03801 Vaccinium macrocarpon HOM05D000451 ORTHO05D000351 4.7e-06 55.8 72 40.3
Cpa.g.sc27.138 Carica papaya HOM05D000451 ORTHO05D014276 6.1e-06 55.5 53 43.4
Cfa000339 Carpinus fangiana HOM05D000451 ORTHO05D000351 6.1e-06 55.5 60 41.7
Haze_06592 Corylus avellana HOM05D000451 ORTHO05D000351 6.1e-06 55.5 60 41.7
QL05p080957 Quercus lobata HOM05D000451 ORTHO05D000351 6.1e-06 55.5 72 37.5
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 6.1e-06 55.5 48 43.8
TPR.G36777 Trifolium pratense HOM05D000451 ORTHO05D000351 6.1e-06 55.5 63 42.9
Ca_18473_v3 Cicer arietinum L. HOM05D000451 ORTHO05D000351 8.0e-06 55.1 60 45.0
HanXRQChr05g0131101 Helianthus annuus HOM05D000451 ORTHO05D000351 8.0e-06 55.1 82 34.1
Lalb_Chr05g0218121 Lupinus albus HOM05D000451 ORTHO05D000351 8.0e-06 55.1 76 32.9
MD05G1326700 Malus domestica HOM05D000451 ORTHO05D000351 8.0e-06 55.1 55 45.5
Rhsim12G0013100 Rhododendron simsii HOM05D000451 ORTHO05D000351 8.0e-06 55.1 33 57.6
TAR629G3465 Trochodendron aralioides HOM05D000451 ORTHO05D000351 8.0e-06 55.1 72 38.9


User provided reference genes

Program Settings