Gene: AT1G09060

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G09060
  • Transcript Identifier AT1G09060.1
  • Gene Type Coding gene
  • Location Chr1 : 2921235-2925212 : negative

Gene Family Information

  • ID HOM05D000451
  • #Genes/#Species 1160/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G09060.1
  • uniprot B9DGQ5

Descriptions

  • Description JmjC domain protein JMJ24
  • Computational description Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129), WRC (InterPro:IPR014977), Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT4G00990.1); Has 1115 Blast hits to 1061 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 398; Fungi - 30; Plants - 639; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0033169
IBA
IEA
Gene Ontologyhistone H3-K9 demethylation1
GO:0033169
IEA
InterProhistone H3-K9 demethylation
GO:0006357
IBA
Gene Ontologyregulation of transcription by RNA polymerase II1
GO:0051573
IGI
Gene Ontologynegative regulation of histone H3-K9 methylation2
GO:0016567
IDA
Gene Ontologyprotein ubiquitination2
GO:2000616
IMP
Gene Ontologynegative regulation of histone H3-K9 acetylation3
GO:0010628
IMP
Gene Ontologypositive regulation of gene expression3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0061630
IDA
Gene Ontologyubiquitin protein ligase activity2
GO:0032454
IBA
IEA
Gene Ontologyhistone demethylase activity (H3-K9 specific)1
GO:0032454
IEA
InterProhistone demethylase activity (H3-K9 specific)
GO:0031490
IBA
Gene Ontologychromatin DNA binding1
GO:0003712
IBA
Gene Ontologytranscription coregulator activity1
GO:0042393
IDA
Gene Ontologyhistone binding2
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0000976
IDA
Gene Ontologytranscription cis-regulatory region binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus3
GO:0000118
IBA
Gene Ontologyhistone deacetylase complex1
GO:0000785
IBA
Gene Ontologychromatin1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003347 JmjC domain
IPR014977 WRC domain
IPR045109 Histone demethylase JHDM2-like
IPR018866 Zinc-finger domain of monoamine-oxidase A repressor R1
Mapman id Description
12.3.3.8.1 Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (KDM3)