Gene: Sopen02g023610
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen02g023610
- Transcript Identifier Sopen02g023610.1
- Gene Type Coding gene
- Location Spenn-ch02 : 47038565-47044966 : positive
Gene Family Information
- ID HOM05D000451
- #Genes/#Species 1160/99
- Phylogenetic origin
- ID ORTHO05D000351
- #Genes/#Species 1073/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen02g023610.1
Descriptions
- Description Zinc finger, RING-type, Transcription factor jumonji/aspartyl beta-hydroxylase | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase , Zinc finger, RING-type , Transcription factor jumonji , WRC , Cell division cycle-associated protein | BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0033169 | IEA | InterPro | histone H3-K9 demethylation | |
GO:0051573 | ISO | PLAZA Integrative Orthology | negative regulation of histone H3-K9 methylation | AT1G09060 |
GO:0010628 | ISO | PLAZA Integrative Orthology | positive regulation of gene expression | AT1G09060 |
GO:2000616 | ISO | PLAZA Integrative Orthology | negative regulation of histone H3-K9 acetylation | AT1G09060 |
GO:0016567 | ISO | PLAZA Integrative Orthology | protein ubiquitination | AT1G09060 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0032454 | IEA | InterPro | histone demethylase activity (H3-K9 specific) | |
GO:0061630 | ISO | PLAZA Integrative Orthology | ubiquitin protein ligase activity | AT1G09060 |
GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G09060 |
GO:0042393 | ISO | PLAZA Integrative Orthology | histone binding | AT1G09060 |
GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | AT1G09060 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G09060 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
12.3.3.8.1 | Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (KDM3) |