Gene: Sopen02g023610

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g023610
  • Transcript Identifier Sopen02g023610.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 47038565-47044966 : positive

Gene Family Information

  • ID HOM05D000451
  • #Genes/#Species 1160/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g023610.1

Descriptions

  • Description Zinc finger, RING-type, Transcription factor jumonji/aspartyl beta-hydroxylase | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase , Zinc finger, RING-type , Transcription factor jumonji , WRC , Cell division cycle-associated protein | BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0033169
IEA
InterProhistone H3-K9 demethylation
GO:0051573
ISO
PLAZA Integrative Orthologynegative regulation of histone H3-K9 methylation AT1G09060
GO:0010628
ISO
PLAZA Integrative Orthologypositive regulation of gene expression AT1G09060
GO:2000616
ISO
PLAZA Integrative Orthologynegative regulation of histone H3-K9 acetylation AT1G09060
GO:0016567
ISO
PLAZA Integrative Orthologyprotein ubiquitination AT1G09060

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032454
IEA
InterProhistone demethylase activity (H3-K9 specific)
GO:0061630
ISO
PLAZA Integrative Orthologyubiquitin protein ligase activity AT1G09060
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G09060
GO:0042393
ISO
PLAZA Integrative Orthologyhistone binding AT1G09060
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT1G09060

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G09060

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR045109 Histone demethylase JHDM2-like
IPR014977 WRC domain
IPR018866 Zinc-finger domain of monoamine-oxidase A repressor R1
IPR003347 JmjC domain
Mapman id Description
12.3.3.8.1 Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (KDM3)