Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 4.3e-43 177.6 88 100.0
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 1.1e-27 126.3 70 85.7
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.5e-27 125.9 70 85.7
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.5e-27 125.9 70 85.7
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 1.9e-27 125.6 70 85.7
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 2.5e-27 125.2 70 85.7
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 3.3e-27 124.8 70 85.7
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.3e-27 124.4 70 85.7
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.3e-27 124.4 70 85.7
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.3e-27 124.4 70 85.7
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 4.3e-27 124.4 74 81.1
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 5.6e-27 124.0 70 85.7
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 5.6e-27 124.0 70 84.3
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 9.6e-27 123.2 70 84.3
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 9.6e-27 123.2 70 82.9
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 9.6e-27 123.2 70 82.9
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.3e-26 122.9 70 84.3
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 1.6e-26 122.5 70 84.3
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 2.1e-26 122.1 70 84.3
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 2.1e-26 122.1 70 84.3
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.1e-26 122.1 70 82.9
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 2.1e-26 122.1 70 82.9
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 3.7e-26 121.3 70 82.9
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 3.7e-26 121.3 70 82.9
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 3.7e-26 121.3 69 82.6
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 3.7e-26 121.3 70 82.9
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 3.7e-26 121.3 70 84.3
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 4.8e-26 120.9 70 84.3
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 4.8e-26 120.9 70 81.4
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 6.2e-26 120.6 70 81.4
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 6.2e-26 120.6 70 82.9
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 6.2e-26 120.6 70 82.9
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 6.2e-26 120.6 70 80.0
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 8.2e-26 120.2 70 81.4
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 1.1e-25 119.8 70 78.6
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 1.8e-25 119.0 70 77.1
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.8e-25 119.0 70 81.4
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 2.4e-25 118.6 73 78.1
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.4e-25 118.6 70 81.4
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 2.4e-25 118.6 70 80.0
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 5.3e-25 117.5 70 78.6
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.3e-25 117.5 70 78.6
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 6.9e-25 117.1 69 79.7
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 6.9e-25 117.1 70 80.0
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 6.9e-25 117.1 70 78.6
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 6.9e-25 117.1 84 70.2
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 1.2e-24 116.3 70 81.4
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 1.5e-24 115.9 70 78.6
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 1.5e-24 115.9 70 78.6
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 2.0e-24 115.5 74 75.7
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 2.0e-24 115.5 70 78.6
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 2.6e-24 115.2 69 78.3
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 2.6e-24 115.2 70 78.6
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 2.6e-24 115.2 70 78.6
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 3.4e-24 114.8 70 75.7
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 3.4e-24 114.8 70 77.1
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 3.4e-24 114.8 70 75.7
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 3.4e-24 114.8 70 75.7
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 4.5e-24 114.4 70 75.7
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 4.5e-24 114.4 70 77.1
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 4.5e-24 114.4 70 78.6
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 5.8e-24 114.0 70 78.6
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 5.8e-24 114.0 70 74.3
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 5.8e-24 114.0 70 74.3
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 5.8e-24 114.0 70 77.1
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 7.6e-24 113.6 70 74.3
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 7.6e-24 113.6 70 75.7
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 7.6e-24 113.6 70 80.0
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 1.0e-23 113.2 69 78.3
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 1.0e-23 113.2 70 75.7
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 1.0e-23 113.2 70 74.3
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 1.0e-23 113.2 70 75.7
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 1.3e-23 112.8 77 71.4
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 1.3e-23 112.8 70 75.7
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 1.7e-23 112.5 70 75.7
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 1.7e-23 112.5 70 75.7
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 2.2e-23 112.1 70 74.3
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 3.8e-23 111.3 70 74.3
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 3.8e-23 111.3 70 77.1
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 3.8e-23 111.3 69 76.8
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 3.8e-23 111.3 69 76.8
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 3.8e-23 111.3 69 76.8
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 4.9e-23 110.9 70 72.9
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 4.9e-23 110.9 70 74.3
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 4.9e-23 110.9 69 73.9
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 6.5e-23 110.5 70 71.4
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 8.4e-23 110.2 70 72.9
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 8.4e-23 110.2 70 72.9
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 8.4e-23 110.2 70 72.9
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.1e-22 109.8 70 74.3
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 1.1e-22 109.8 74 73.0
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 1.1e-22 109.8 70 75.7
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 1.4e-22 109.4 68 76.5
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 2.5e-22 108.6 74 71.6
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 4.2e-22 107.8 70 75.7
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 5.5e-22 107.5 70 72.9
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 5.5e-22 107.5 70 72.9
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 7.1e-22 107.1 70 75.7
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 7.1e-22 107.1 69 69.6
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 9.3e-22 106.7 70 74.3
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 9.3e-22 106.7 74 68.9
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 9.3e-22 106.7 70 70.0
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 1.6e-21 105.9 70 71.4
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 2.7e-21 105.1 70 68.6
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 2.7e-21 105.1 70 71.4
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 3.5e-21 104.8 62 77.4
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 2.5e-19 98.6 50 88.0
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 4.3e-19 97.8 69 65.2
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 2.8e-18 95.1 70 65.7
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 6.3e-18 94.0 70 65.7
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 1.8e-17 92.4 69 62.3
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 2.2e-15 85.5 103 47.6
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 8.5e-15 83.6 62 66.1
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 1.4e-14 82.8 69 58.0
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 7.2e-14 80.5 44 84.1
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 1.2e-13 79.7 48 79.2
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.1e-13 79.0 46 82.6
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 6.1e-13 77.4 60 70.0
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 1.8e-12 75.9 47 78.7
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.8e-12 75.9 60 68.3
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.0e-12 75.1 48 77.1
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 6.7e-12 73.9 48 72.9
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 8.8e-12 73.6 41 75.6
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 7.4e-11 70.5 70 54.3
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.1e-09 66.6 43 72.1
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.4e-09 65.5 43 72.1
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 6.9e-09 63.9 58 63.8
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 8.5e-07 57.0 42 61.9
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 3.2e-06 55.1 32 71.9


User provided reference genes

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