Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13977 Sapria himalayana HOM05D004178 ORTHO05D005204 4.3e-130 468.0 235 100.0
Manes.06G133600 Manihot esculenta HOM05D004178 ORTHO05D005204 2.7e-52 209.5 137 79.6
ClCG07G016820 Citrullus lanatus HOM05D004178 ORTHO05D005204 3.0e-51 206.1 188 58.0
Aa31LG11G1940 Aethionema arabicum HOM05D004178 ORTHO05D005204 3.9e-51 205.7 136 73.5
Haze_13892 Corylus avellana HOM05D004178 ORTHO05D005204 5.1e-51 205.3 194 56.2
Sp2g24660 Schrenkiella parvula HOM05D004178 ORTHO05D005204 1.1e-50 204.1 195 56.4
MELO3C017663.2 Cucumis melo HOM05D004178 ORTHO05D005204 1.5e-50 203.8 184 57.6
AL8G38150 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 5.7e-50 201.8 136 73.5
BcaC06g33236 Brassica carinata HOM05D004178 ORTHO05D005204 9.7e-50 201.1 136 73.5
A03p47060 Brassica napus HOM05D004178 ORTHO05D005204 9.7e-50 201.1 136 73.5
C07p45140 Brassica napus HOM05D004178 ORTHO05D005204 9.7e-50 201.1 136 73.5
BolC7t45036H Brassica oleracea HOM05D004178 ORTHO05D005204 9.7e-50 201.1 136 73.5
BraA03t13829Z Brassica rapa HOM05D004178 ORTHO05D005204 9.7e-50 201.1 136 73.5
AT5G61460 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 2.2e-49 199.9 136 73.5
BcaC06g33151 Brassica carinata HOM05D004178 ORTHO05D005204 2.2e-49 199.9 136 72.8
Carub.0008s2215 Capsella rubella HOM05D004178 ORTHO05D005204 2.2e-49 199.9 136 72.8
GSVIVG01013865001 Vitis vinifera HOM05D004178 ORTHO05D005204 2.2e-49 199.9 194 57.7
Cfa008151 Carpinus fangiana HOM05D004178 ORTHO05D005204 4.8e-49 198.7 194 56.2
Nn6g33950 Nelumbo nucifera HOM05D004178 ORTHO05D005204 4.8e-49 198.7 194 56.2
Thhalv10003566m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 6.3e-49 198.4 136 72.8
Potri.003G107700 Populus trichocarpa HOM05D004178 ORTHO05D005204 6.3e-49 198.4 135 75.6
Sabra03G0074500 Salix brachista HOM05D004178 ORTHO05D005204 6.3e-49 198.4 137 75.2
Ciclev10004204m.g Citrus clementina HOM05D004178 ORTHO05D005204 1.1e-48 197.6 169 61.5
Cpa.g.sc1936.1 Carica papaya HOM05D004178 ORTHO05D005204 1.4e-48 197.2 135 73.3
CiPaw.03G020700 Carya illinoinensis HOM05D004178 ORTHO05D005204 1.4e-48 197.2 194 55.2
TAR375G0252 Trochodendron aralioides HOM05D004178 ORTHO05D005204 2.4e-48 196.4 194 56.2
Atru.chr1.752 Acer truncatum HOM05D004178 ORTHO05D005204 5.3e-48 195.3 169 60.4
CsaV3_4G004020 Cucumis sativus L. HOM05D004178 ORTHO05D005204 5.3e-48 195.3 188 55.3
Sed0013674 Sechium edule HOM05D004178 ORTHO05D005204 5.3e-48 195.3 136 72.1
TPR.G2991 Trifolium pratense HOM05D004178 ORTHO05D005204 1.6e-47 193.7 192 56.2
Medtr4g036760 Medicago truncatula HOM05D004178 ORTHO05D005204 2.0e-47 193.4 139 70.5
Phvul.011G007300 Phaseolus vulgaris HOM05D004178 ORTHO05D005204 2.0e-47 193.4 180 57.2
QL09p005323 Quercus lobata HOM05D004178 ORTHO05D005204 2.6e-47 193.0 188 55.9
CSS0036077 Camellia sinensis var. sinensis HOM05D004178 ORTHO05D005204 3.5e-47 192.6 188 54.8
MD07G1252300 Malus domestica HOM05D004178 ORTHO05D005204 3.5e-47 192.6 197 55.3
Glyma.09G229900 Glycine max HOM05D004178 ORTHO05D005204 5.9e-47 191.8 180 56.7
Dinv06570 Davidia involucrata HOM05D004178 ORTHO05D005204 7.7e-47 191.4 194 55.2
Psat7g194520 Pisum sativum HOM05D004178 ORTHO05D005204 7.7e-47 191.4 136 72.1
CARHR275220 Cardamine hirsuta HOM05D004178 ORTHO05D005204 1.3e-46 190.7 136 69.1
Ca_30729_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 1.3e-46 190.7 136 71.3
Thecc.03G153700 Theobroma cacao HOM05D004178 ORTHO05D005204 1.3e-46 190.7 133 72.9
VMungo1127G0288 Vigna mungo HOM05D004178 ORTHO05D005204 1.3e-46 190.7 152 62.5
FAN01G0652 Fragaria x ananassa HOM05D004178 ORTHO05D005204 1.7e-46 190.3 194 53.6
FAN03G3201 Fragaria x ananassa HOM05D004178 ORTHO05D005204 2.2e-46 189.9 184 54.3
AT5G07660 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 2.9e-46 189.5 136 71.3
Prupe.2G275800 Prunus persica HOM05D004178 ORTHO05D005204 2.9e-46 189.5 188 54.8
TWI14G1279 Tripterygium wilfordii HOM05D004178 ORTHO05D005204 2.9e-46 189.5 136 71.3
RcHm_v2.0_Chr1g0374131 Rosa chinensis HOM05D004178 ORTHO05D005204 5.0e-46 188.7 194 54.1
FAN10G0409 Fragaria x ananassa HOM05D004178 ORTHO05D005204 6.5e-46 188.3 194 53.1
Carub.0006s0663 Capsella rubella HOM05D004178 ORTHO05D005204 1.1e-45 187.6 136 71.3
Duzib084G0917 Durio zibethinus HOM05D004178 ORTHO05D005204 1.1e-45 187.6 188 56.9
Lj1C978G4 Lonicera japonica HOM05D004178 ORTHO05D005204 1.1e-45 187.6 184 54.3
CDE11G0310 Ceratophyllum demersum HOM05D004178 ORTHO05D005204 1.5e-45 187.2 188 54.3
Eucgr.A02900 Eucalyptus grandis HOM05D004178 ORTHO05D005204 1.5e-45 187.2 139 70.5
Rhsim03G0166000 Rhododendron simsii HOM05D004178 ORTHO05D005204 1.5e-45 187.2 136 69.1
AL6G18000 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 1.9e-45 186.8 136 69.9
FvH4_7g27291 Fragaria vesca HOM05D004178 ORTHO05D005204 2.5e-45 186.4 188 53.2
FAN06G0596 Fragaria x ananassa HOM05D004178 ORTHO05D005204 2.5e-45 186.4 188 53.7
ATR0317G120 Amborella trichopoda HOM05D004178 ORTHO05D005204 3.2e-45 186.0 133 68.4
FAN06G2180 Fragaria x ananassa HOM05D004178 ORTHO05D005204 3.2e-45 186.0 188 53.2
TPR.G3678 Trifolium pratense HOM05D004178 ORTHO05D005204 4.2e-45 185.7 136 69.9
Sopen05g030150 Solanum pennellii HOM05D004178 ORTHO05D005204 7.2e-45 184.9 194 54.1
Medtr4g061050 Medicago truncatula HOM05D004178 ORTHO05D005204 9.4e-45 184.5 151 65.6
Solyc05g051680.4 Solanum lycopersicum HOM05D004178 ORTHO05D005204 1.2e-44 184.1 194 53.6
Peaxi162Scf00167g00610 Petunia axillaris HOM05D004178 ORTHO05D005204 2.7e-44 183.0 188 54.8
arahy.Tifrunner.gnm1.ann1.2YP1UN Arachis hypogaea HOM05D004178 ORTHO05D005204 4.7e-44 182.2 136 66.9
Nitab4.5_0003647g0020 Nicotiana tabacum HOM05D004178 ORTHO05D005204 4.7e-44 182.2 197 52.8
PGSC0003DMG400014287 Solanum tuberosum HOM05D004178 ORTHO05D005204 6.1e-44 181.8 188 54.3
Nitab4.5_0000818g0230 Nicotiana tabacum HOM05D004178 ORTHO05D005204 1.0e-43 181.0 197 52.3
arahy.Tifrunner.gnm1.ann1.D3FWW6 Arachis hypogaea HOM05D004178 ORTHO05D005204 1.8e-43 180.3 136 66.2
Oeu021706.1 Olea europaea HOM05D004178 ORTHO05D005204 1.8e-43 180.3 133 70.7
HPP92_027283 Vanilla planifolia HOM05D004178 ORTHO05D005204 1.8e-43 180.3 182 53.8
Lj3g0020737 Lotus japonicus HOM05D004178 ORTHO05D005204 2.3e-43 179.9 132 68.9
BraA02t04928Z Brassica rapa HOM05D004178 ORTHO05D005204 4.0e-43 179.1 136 66.9
PSO063G1916 Papaver somniferum HOM05D004178 ORTHO05D005204 5.2e-43 178.7 194 52.1
Aqoxy5G03870 Aquilegia oxysepala HOM05D004178 ORTHO05D005204 8.8e-43 177.9 133 69.2
C02p03240 Brassica napus HOM05D004178 ORTHO05D005204 8.8e-43 177.9 136 66.9
Actinidia13583 Actinidia chinensis HOM05D004178 ORTHO05D005204 2.6e-42 176.4 194 51.5
Thhalv10012532m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 4.4e-42 175.6 136 67.6
SalBow5G4122 Salvia bowleyana HOM05D004178 ORTHO05D005204 9.7e-42 174.5 195 51.8
MSTRG.8830 Avicennia marina HOM05D004178 ORTHO05D005204 1.3e-41 174.1 183 53.0
PGR042G0822 Punica granatum HOM05D004178 ORTHO05D005204 1.3e-41 174.1 190 53.7
CAN.G515.9 Capsicum annuum HOM05D004178 ORTHO05D005204 2.2e-41 173.3 136 67.6
Zm00001eb309160 Zea mays HOM05D004178 ORTHO05D005204 2.2e-41 173.3 151 60.3
Cc02_g04400 Coffea canephora HOM05D004178 ORTHO05D005204 1.4e-40 170.6 133 63.9
Migut.F00486 Erythranthe guttata HOM05D004178 ORTHO05D005204 4.1e-40 169.1 133 66.2
COL.COLO4_14102 Corchorus olitorius HOM05D004178 ORTHO05D005204 2.0e-39 166.8 136 66.9
unitig_37.g12493 Utricularia gibba HOM05D004178 ORTHO05D005204 4.5e-39 165.6 133 63.2
CANSAT56G2947 Cannabis sativa HOM05D004178 ORTHO05D005204 7.7e-39 164.9 133 63.9
BcaB05g21602 Brassica carinata HOM05D004178 ORTHO05D005204 5.0e-38 162.2 136 61.0
BcaNung06187 Brassica carinata HOM05D004178 ORTHO05D005204 5.0e-38 162.2 136 61.0
PSO782G3243 Papaver somniferum HOM05D004178 ORTHO05D005204 6.5e-38 161.8 131 63.4
ECA232G0935 Erigeron canadensis HOM05D004178 ORTHO05D005204 8.5e-38 161.4 136 58.8
Lsat_1_v5_gn_9_51940 Lactuca sativa HOM05D004178 ORTHO05D005204 8.5e-38 161.4 129 64.3
HanXRQChr01g0028141 Helianthus annuus HOM05D004178 ORTHO05D005204 5.5e-37 158.7 136 59.6
Ah.07g207660 Amaranthus hybridus HOM05D004178 ORTHO05D005204 3.6e-36 156.0 136 62.5
Gohir.D12G200300 Gossypium hirsutum HOM05D004178 ORTHO05D005204 8.0e-36 154.8 119 68.1
Gorai.008G215500 Gossypium raimondii HOM05D004178 ORTHO05D005204 1.8e-35 153.7 115 70.4
vmacro06815 Vaccinium macrocarpon HOM05D004178 ORTHO05D005204 1.8e-35 153.7 188 47.3
AUR62015432 Chenopodium quinoa HOM05D004178 ORTHO05D005204 3.0e-35 152.9 186 46.8
Lalb_Chr19g0140351 Lupinus albus HOM05D004178 ORTHO05D005204 1.2e-34 151.0 136 58.8
Gohir.A12G197800 Gossypium hirsutum HOM05D004178 ORTHO05D005204 1.5e-34 150.6 118 66.9
EL10Ac3g05856 Beta vulgaris HOM05D004178 ORTHO05D005204 1.3e-33 147.5 133 58.6
AUR62002220 Chenopodium quinoa HOM05D004178 ORTHO05D005204 1.3e-33 147.5 181 47.5
SGA_v2.0_scaffold2G01219 Striga asiatica HOM05D004178 ORTHO05D005204 1.8e-32 143.7 129 56.6
BcaC03g13191 Brassica carinata HOM05D004178 ORTHO05D005204 9.1e-32 141.4 132 55.3
AL1G57860 Arabidopsis lyrata HOM05D004178 ORTHO05D005039 2.2e-30 136.7 99 73.7
DCAR_014619 Daucus carota HOM05D004178 ORTHO05D005204 3.8e-30 136.0 128 59.4
SMO364G0410 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 9.5e-29 131.3 142 50.0
Pp3c11_11190 Physcomitrium patens HOM05D004178 ORTHO05D005204 1.4e-27 127.5 133 48.1
Sc19g0002080 Simmondsia chinensis HOM05D004178 ORTHO05D005204 6.8e-27 125.2 185 42.7
Psat3g047440 Pisum sativum HOM05D004178 ORTHO05D005204 3.4e-26 122.9 98 68.4
AagrBONN_evm.TU.Sc2ySwM_228.971 Anthoceros agrestis HOM05D004178 ORTHO05D005204 2.2e-25 120.2 133 45.9
Mapoly0003s0057 Marchantia polymorpha HOM05D004178 ORTHO05D005204 3.5e-23 112.8 133 41.4
BolC2t06288H Brassica oleracea HOM05D004178 ORTHO05D005204 5.0e-22 109.0 80 72.5
AUR62042657 Chenopodium quinoa HOM05D004178 ORTHO05D005204 2.0e-18 97.1 124 49.2
SMO117G0047 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 2.2e-17 93.6 125 39.2
Os09g0121050 Oryza sativa ssp. japonica HOM05D004178 ORTHO05D005204 5.4e-16 89.0 89 51.7
Ah.02g120680 Amaranthus hybridus HOM05D004178 ORTHO05D005204 1.3e-14 84.3 83 57.8
MCO11G708 Micromonas commoda HOM05D004178 ORTHO05D005204 3.9e-14 82.8 132 36.4
SMO137G0368 Selaginella moellendorffii HOM05D027672 ORTHO05D005204 5.6e-13 79.0 113 36.3
Glyma.12G006400 Glycine max HOM05D004178 ORTHO05D005204 1.6e-12 77.4 47 83.0
Sp7g06190 Schrenkiella parvula HOM05D004178 ORTHO05D005204 1.8e-11 73.9 163 32.5
SMO302G0053 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 8.9e-11 71.6 131 35.1
Medtr1g018410 Medicago truncatula HOM05D004178 ORTHO05D005204 1.7e-09 67.4 64 57.8
Ca_02789_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 5.4e-08 62.4 29 96.6
CBR_g34600 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-06 58.2 106 34.0
SMO202G0076 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 2.3e-06 57.0 100 35.0


User provided reference genes

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