Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI09016 Sapria himalayana HOM05D006560 ORTHO05D008164 7.6e-286 986.5 500 100.0
Manes.01G126500 Manihot esculenta HOM05D006560 ORTHO05D008164 1.4e-90 337.8 445 45.8
Potri.015G148300 Populus trichocarpa HOM05D006560 ORTHO05D008164 3.9e-88 329.7 444 45.0
TWI77G0885 Tripterygium wilfordii HOM05D006560 ORTHO05D008164 5.8e-84 315.8 443 43.8
Atru.chr1.2184 Acer truncatum HOM05D006560 ORTHO05D008164 7.5e-84 315.5 443 44.0
TAR629G1839 Trochodendron aralioides HOM05D006560 ORTHO05D008164 2.0e-81 307.4 457 42.2
CiPaw.04G006800 Carya illinoinensis HOM05D006560 ORTHO05D008164 7.8e-81 305.4 446 43.7
QL02p055474 Quercus lobata HOM05D006560 ORTHO05D008164 1.5e-79 301.2 384 47.1
vmacro20436 Vaccinium macrocarpon HOM05D006560 ORTHO05D008164 3.3e-79 300.1 409 45.0
Sabra16G0321300 Salix brachista HOM05D006560 ORTHO05D008164 3.6e-78 296.6 473 40.4
Actinidia22879 Actinidia chinensis HOM05D006560 ORTHO05D008164 8.1e-78 295.4 384 46.4
Lalb_Chr17g0345771 Lupinus albus HOM05D006560 ORTHO05D008164 1.5e-76 291.2 369 45.0
Glyma.14G208100 Glycine max HOM05D006560 ORTHO05D008164 7.5e-76 288.9 474 40.1
Lj4A249G52 Lonicera japonica HOM05D006560 ORTHO05D008164 4.9e-75 286.2 419 42.2
Phvul.008G242800 Phaseolus vulgaris HOM05D006560 ORTHO05D008164 1.4e-74 284.6 363 44.9
Aqoxy3G04298 Aquilegia oxysepala HOM05D006560 ORTHO05D008164 1.9e-74 284.3 468 39.5
Cfa008016 Carpinus fangiana HOM05D006560 ORTHO05D008164 1.9e-74 284.3 375 45.3
Glyma.02G239200 Glycine max HOM05D006560 ORTHO05D008164 3.2e-74 283.5 348 46.6
GSVIVG01033201001 Vitis vinifera HOM05D006560 ORTHO05D008164 3.2e-74 283.5 372 47.0
VMungo0647G2139 Vigna mungo HOM05D006560 ORTHO05D008164 5.4e-74 282.7 365 44.4
Cc07_g12560 Coffea canephora HOM05D006560 ORTHO05D008164 9.2e-74 282.0 382 43.2
Sabra16G0322200 Salix brachista HOM05D006560 ORTHO05D008164 2.1e-73 280.8 474 39.5
Sabra15G0156900 Salix brachista HOM05D006560 ORTHO05D008164 3.5e-73 280.0 484 39.0
MD09G1187400 Malus domestica HOM05D006560 ORTHO05D008164 4.6e-73 279.6 450 40.7
arahy.Tifrunner.gnm1.ann1.RNL3QM Arachis hypogaea HOM05D006560 ORTHO05D008164 7.8e-73 278.9 349 46.4
arahy.Tifrunner.gnm1.ann1.N6ISZX Arachis hypogaea HOM05D006560 ORTHO05D008164 1.0e-72 278.5 349 46.1
LjContig00141g0007295 Lotus japonicus HOM05D006560 ORTHO05D008164 1.7e-72 277.7 351 44.7
Medtr5g076180 Medicago truncatula HOM05D006560 ORTHO05D008164 1.7e-72 277.7 349 44.4
TPR.G15397 Trifolium pratense HOM05D006560 ORTHO05D008164 1.7e-72 277.7 348 44.8
Eucgr.B03794 Eucalyptus grandis HOM05D006560 ORTHO05D008164 2.3e-72 277.3 403 41.9
Hund12951 Selenicereus undatus HOM05D006560 ORTHO05D008164 3.9e-72 276.6 354 44.6
Prupe.8G267600 Prunus persica HOM05D006560 ORTHO05D008164 8.6e-72 275.4 455 41.1
Psat2g048560 Pisum sativum HOM05D006560 ORTHO05D008164 1.5e-71 274.6 348 45.4
RcHm_v2.0_Chr7g0242051 Rosa chinensis HOM05D006560 ORTHO05D008164 2.5e-71 273.9 435 41.6
Nitab4.5_0000108g0060 Nicotiana tabacum HOM05D006560 ORTHO05D008164 9.5e-71 271.9 484 37.8
Ca_05740_v3 Cicer arietinum L. HOM05D006560 ORTHO05D008164 2.1e-70 270.8 348 44.5
DCAR_014134 Daucus carota HOM05D006560 ORTHO05D008164 2.1e-70 270.8 487 36.8
FvH4_5g39750 Fragaria vesca HOM05D006560 ORTHO05D008164 2.8e-70 270.4 451 39.0
HanXRQChr16g0532681 Helianthus annuus HOM05D006560 ORTHO05D008164 4.7e-70 269.6 469 35.8
ECA246G0244 Erigeron canadensis HOM05D006560 ORTHO05D008164 1.4e-69 268.1 459 36.2
Nitab4.5_0003580g0010 Nicotiana tabacum HOM05D006560 ORTHO05D008164 1.4e-69 268.1 487 37.2
ClCG05G011330 Citrullus lanatus HOM05D006560 ORTHO05D008164 8.9e-69 265.4 454 39.4
Sp3g01710 Schrenkiella parvula HOM05D006560 ORTHO05D008164 1.2e-68 265.0 475 37.1
Haze_14043 Corylus avellana HOM05D006560 ORTHO05D008164 1.5e-68 264.6 467 38.3
Solyc02g081520.3 Solanum lycopersicum HOM05D006560 ORTHO05D008164 3.4e-68 263.5 491 36.7
Migut.K01188 Erythranthe guttata HOM05D006560 ORTHO05D008164 4.4e-68 263.1 403 40.2
CsaV3_3G021130 Cucumis sativus L. HOM05D006560 ORTHO05D008164 7.6e-68 262.3 448 38.4
Hma1.2p1_0085F.1_g043920 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.3e-67 261.5 446 39.7
MELO3C020249.2 Cucumis melo HOM05D006560 ORTHO05D008164 2.2e-67 260.8 450 38.9
Gohir.A12G053000 Gossypium hirsutum HOM05D006560 ORTHO05D008164 2.2e-67 260.8 455 38.7
SalBow5G2177 Salvia bowleyana HOM05D006560 ORTHO05D008164 4.9e-67 259.6 400 39.0
Duzib138G1900 Durio zibethinus HOM05D006560 ORTHO05D008164 1.4e-66 258.1 458 37.3
Thecc.04G055900 Theobroma cacao HOM05D006560 ORTHO05D008164 1.9e-66 257.7 459 37.7
MSTRG.3663 Avicennia marina HOM05D006560 ORTHO05D008164 2.4e-66 257.3 372 41.4
CANSAT64G2566 Cannabis sativa HOM05D006560 ORTHO05D008164 2.4e-66 257.3 367 42.8
PSO063G7212 Papaver somniferum HOM05D006560 ORTHO05D008164 7.1e-66 255.8 472 35.6
PSO782G5584 Papaver somniferum HOM05D006560 ORTHO05D008164 3.5e-65 253.4 473 35.5
Aa31LG5G13150 Aethionema arabicum HOM05D006560 ORTHO05D008164 6.0e-65 252.7 355 40.6
Gorai.008G054800 Gossypium raimondii HOM05D006560 ORTHO05D008164 1.0e-64 251.9 474 36.9
EL10Ac6g14054 Beta vulgaris HOM05D006560 ORTHO05D008164 1.3e-64 251.5 428 38.1
CAN.G809.82 Capsicum annuum HOM05D006560 ORTHO05D008164 1.3e-64 251.5 373 41.8
COL.COLO4_13435 Corchorus olitorius HOM05D006560 ORTHO05D008164 1.7e-64 251.1 376 41.8
Gohir.D12G051500 Gossypium hirsutum HOM05D006560 ORTHO05D008164 2.3e-64 250.8 474 36.9
Sed0010007 Sechium edule HOM05D006560 ORTHO05D008164 3.0e-64 250.4 457 36.1
A05p44410 Brassica napus HOM05D006560 ORTHO05D008164 5.1e-64 249.6 467 36.8
PGR102G0946 Punica granatum HOM05D006560 ORTHO05D008164 1.1e-63 248.4 422 39.3
AL3G12070 Arabidopsis lyrata HOM05D006560 ORTHO05D008164 1.5e-63 248.1 461 36.7
AUR62014236 Chenopodium quinoa HOM05D006560 ORTHO05D008164 1.5e-63 248.1 453 36.4
QL02p056517 Quercus lobata HOM05D006560 ORTHO05D008164 1.6e-62 244.6 525 34.9
Sc09g0004640 Simmondsia chinensis HOM05D006560 ORTHO05D008164 1.8e-61 241.1 450 35.8
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 2.4e-61 240.7 369 41.2
Dinv28275 Davidia involucrata HOM05D006560 ORTHO05D008164 6.8e-61 239.2 283 46.6
Lsat_1_v5_gn_3_69681 Lactuca sativa HOM05D006560 ORTHO05D008164 8.9e-61 238.8 471 37.6
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 1.5e-60 238.0 470 36.0
CARHR076680 Cardamine hirsuta HOM05D006560 ORTHO05D008164 1.7e-59 234.6 468 34.8
ATR0618G008 Amborella trichopoda HOM05D006560 ORTHO05D008164 2.1e-57 227.6 488 34.0
PGSC0003DMG400017739 Solanum tuberosum HOM05D006560 ORTHO05D008164 5.1e-56 223.0 517 33.1
Carub.0003s0178 Capsella rubella HOM05D006560 ORTHO05D008164 6.6e-56 222.6 473 33.0
Thhalv10020468m.g Eutrema salsugineum HOM05D006560 ORTHO05D008164 1.5e-55 221.5 475 33.5
Ah.14g086100 Amaranthus hybridus HOM05D006560 ORTHO05D008164 5.6e-55 219.5 373 38.3
MBI03_g13822_MAGBIO Magnolia biondii HOM05D006560 ORTHO05D008164 7.3e-55 219.2 414 35.7
BraA06t23296Z Brassica rapa HOM05D006560 ORTHO05D008164 3.6e-54 216.9 464 32.3
BcaC05g30516 Brassica carinata HOM05D006560 ORTHO05D008164 6.2e-54 216.1 466 34.1
C09p75830 Brassica napus HOM05D006560 ORTHO05D008164 8.1e-54 215.7 467 33.6
BolC5t35073H Brassica oleracea HOM05D006560 ORTHO05D008164 8.1e-54 215.7 467 33.6
AT3G02680 Arabidopsis thaliana HOM05D006560 ORTHO05D008164 1.2e-52 211.8 328 38.7
BcaC05g30567 Brassica carinata HOM05D006560 ORTHO05D008164 4.9e-51 206.5 334 39.2
AUR62038458 Chenopodium quinoa HOM05D006560 ORTHO05D008164 4.9e-51 206.5 452 33.6
Os10g0487300 Oryza sativa ssp. japonica HOM05D006560 ORTHO05D008164 2.7e-49 200.7 397 34.8
HPP92_015158 Vanilla planifolia HOM05D006560 ORTHO05D008164 6.0e-49 199.5 460 33.9
Cpa.g.sc108.22 Carica papaya HOM05D006560 ORTHO05D008164 2.1e-46 191.0 228 47.8
Peaxi162Scf00344g01815 Petunia axillaris HOM05D006560 ORTHO05D008164 8.1e-46 189.1 494 31.2
Zm00001eb221260 Zea mays HOM05D006560 ORTHO05D008164 1.3e-38 165.2 383 31.3
Migut.L00936 Erythranthe guttata HOM05D006560 ORTHO05D008164 4.0e-37 160.2 242 40.9
Hma1.2p1_0085F.1_g043970 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.5e-36 158.3 308 37.7
Migut.L00953 Erythranthe guttata HOM05D006560 ORTHO05D008164 4.5e-36 156.8 257 38.5
SEGI_37812 Sequoiadendron giganteum HOM05D006560 ORTHO05D008164 4.9e-35 153.3 422 29.6
Oeu060825.3 Olea europaea HOM05D006560 ORTHO05D008164 8.4e-35 152.5 346 33.8
Ciclev10012792m.g Citrus clementina HOM05D006560 ORTHO05D008164 3.2e-34 150.6 211 42.7
CSS0021055 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D000105 2.3e-32 144.4 198 44.9
Nn3g18627 Nelumbo nucifera HOM05D006560 ORTHO05D008164 5.7e-31 139.8 198 41.9
CDE04G3361 Ceratophyllum demersum HOM05D006560 ORTHO05D008164 3.7e-30 137.1 311 33.1
Hma1.2p1_0085F.1_g043925 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 4.6e-25 120.2 90 62.2
Hma1.2p1_0085F.1_g043960 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 4.6e-25 120.2 90 62.2
unitig_748.g7016 Utricularia gibba HOM05D006560 ORTHO05D008164 4.6e-25 120.2 377 27.9
Migut.L00937 Erythranthe guttata HOM05D006560 ORTHO05D008164 7.4e-23 112.8 99 57.6
TPR.G36125 Trifolium pratense HOM05D006560 ORTHO05D008164 1.3e-22 112.1 92 55.4
FAN08G2099 Fragaria x ananassa HOM05D006560 ORTHO05D008164 3.1e-21 107.5 100 53.0
Migut.L00946 Erythranthe guttata HOM05D006560 ORTHO05D008164 4.1e-21 107.1 164 40.9
SMO169G0207 Selaginella moellendorffii HOM05D006560 ORTHO05D008164 9.0e-21 105.9 356 28.9
Sopen02g026150 Solanum pennellii HOM05D006560 ORTHO05D008164 9.0e-21 105.9 286 30.8
Pp3c4_14090 Physcomitrium patens HOM05D006560 ORTHO05D008164 3.8e-19 100.5 357 26.6
Ciclev10013450m.g Citrus clementina HOM05D006560 ORTHO05D008164 1.2e-12 79.0 126 43.7
Migut.L00945 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.5e-12 78.6 52 69.2


User provided reference genes

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