Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI08585 Sapria himalayana HOM05D000706 ORTHO05D001633 1.1e-124 449.9 222 100.0
Potri.005G117300 Populus trichocarpa HOM05D000706 ORTHO05D001633 7.3e-15 85.1 94 47.9
Sabra05G0096300 Salix brachista HOM05D000706 ORTHO05D001633 1.6e-14 84.0 94 47.9
Manes.02G101200 Manihot esculenta HOM05D000706 ORTHO05D001633 5.3e-13 79.0 91 46.2
Manes.01G142800 Manihot esculenta HOM05D000706 ORTHO05D001633 1.5e-12 77.4 91 48.4
Cfa006940 Carpinus fangiana HOM05D000706 ORTHO05D001633 4.5e-12 75.9 89 47.2
CANSAT01G1453 Cannabis sativa HOM05D000706 ORTHO05D001633 5.8e-12 75.5 115 42.6
Potri.007G016000 Populus trichocarpa HOM05D000706 ORTHO05D001633 5.8e-12 75.5 98 48.0
Gohir.A11G177900 Gossypium hirsutum HOM05D000706 ORTHO05D001633 7.6e-12 75.1 93 50.5
Duzib187G0171 Durio zibethinus HOM05D000706 ORTHO05D001633 9.9e-12 74.7 92 51.1
Duzib264G0704 Durio zibethinus HOM05D000706 ORTHO05D001633 1.3e-11 74.3 93 51.6
Sabra07G0013200 Salix brachista HOM05D000706 ORTHO05D001633 1.7e-11 73.9 98 46.9
BcaB08g34790 Brassica carinata HOM05D000706 ORTHO05D001633 2.2e-11 73.6 48 70.8
Gohir.A11G042625 Gossypium hirsutum HOM05D000706 ORTHO05D001633 2.9e-11 73.2 106 43.4
Gohir.D11G046150 Gossypium hirsutum HOM05D000706 ORTHO05D001633 2.9e-11 73.2 106 43.4
Gorai.007G049500 Gossypium raimondii HOM05D000706 ORTHO05D001633 2.9e-11 73.2 106 43.4
TWI73G0969 Tripterygium wilfordii HOM05D000706 ORTHO05D001633 2.9e-11 73.2 100 46.0
CiPaw.08G135500 Carya illinoinensis HOM05D000706 ORTHO05D001633 3.8e-11 72.8 95 45.3
MELO3C017537.2 Cucumis melo HOM05D000706 ORTHO05D001633 4.9e-11 72.4 78 50.0
CiPaw.08G135700 Carya illinoinensis HOM05D000706 ORTHO05D001633 8.4e-11 71.6 95 45.3
CSS0022868 Camellia sinensis var. sinensis HOM05D000706 ORTHO05D001633 1.1e-10 71.2 94 48.9
CSS0044957 Camellia sinensis var. sinensis HOM05D002906 ORTHO05D003211 1.1e-10 71.2 94 48.9
Cpa.g.sc6.213 Carica papaya HOM05D000706 ORTHO05D001633 1.4e-10 70.9 98 43.9
CARHR108570 Cardamine hirsuta HOM05D000706 ORTHO05D001633 1.9e-10 70.5 108 44.4
ClCG07G008850 Citrullus lanatus HOM05D000706 ORTHO05D001633 1.9e-10 70.5 91 46.2
THA.LOC104819187 Tarenaya hassleriana HOM05D000706 ORTHO05D001633 2.4e-10 70.1 102 45.1
CsaV3_4G005330 Cucumis sativus L. HOM05D000706 ORTHO05D001633 3.2e-10 69.7 68 54.4
Hma1.2p1_0266F.1_g106930 Hydrangea macrophylla HOM05D000706 ORTHO05D001633 3.2e-10 69.7 102 45.1
CSS0048501 Camellia sinensis var. sinensis HOM05D000706 ORTHO05D001633 4.2e-10 69.3 89 47.2
CSS0050455 Camellia sinensis var. sinensis HOM05D000706 ORTHO05D001633 4.2e-10 69.3 89 47.2
Aa31LG4G19210 Aethionema arabicum HOM05D000706 ORTHO05D001633 5.4e-10 68.9 49 67.3
Gorai.007G197200 Gossypium raimondii HOM05D000706 ORTHO05D001633 5.4e-10 68.9 93 49.5
ECA232G1998 Erigeron canadensis HOM05D000706 ORTHO05D001633 7.1e-10 68.6 66 53.0
Gohir.D11G185700 Gossypium hirsutum HOM05D000706 ORTHO05D001633 7.1e-10 68.6 93 49.5
RcHm_v2.0_Chr2g0099921 Rosa chinensis HOM05D000706 ORTHO05D001633 7.1e-10 68.6 88 47.7
Sp3g31520 Schrenkiella parvula HOM05D000706 ORTHO05D001633 1.2e-09 67.8 70 50.0
FAN19G1544 Fragaria x ananassa HOM05D000706 ORTHO05D001633 2.7e-09 66.6 90 45.6
Sp5g11090 Schrenkiella parvula HOM05D000706 ORTHO05D001633 3.5e-09 66.2 49 65.3
FvH4_1g12170 Fragaria vesca HOM05D000706 ORTHO05D001633 4.6e-09 65.9 90 43.3
DCAR_017341 Daucus carota HOM05D000706 ORTHO05D001633 6.0e-09 65.5 89 47.2
TAR625G0367 Trochodendron aralioides HOM05D000706 ORTHO05D001633 6.0e-09 65.5 93 40.9
COL.COLO4_21963 Corchorus olitorius HOM05D000706 ORTHO05D001633 7.9e-09 65.1 94 45.7
FAN23G0695 Fragaria x ananassa HOM05D000706 ORTHO05D001633 7.9e-09 65.1 90 43.3
FAN26G0297 Fragaria x ananassa HOM05D000706 ORTHO05D001633 1.0e-08 64.7 90 43.3
TWI53G1717 Tripterygium wilfordii HOM05D000706 ORTHO05D001633 1.0e-08 64.7 101 45.5
GSVIVG01018827001 Vitis vinifera HOM05D000706 ORTHO05D001633 1.0e-08 64.7 91 42.9
Actinidia31014 Actinidia chinensis HOM05D000706 ORTHO05D001633 1.3e-08 64.3 92 45.7
AT2G18090 Arabidopsis thaliana HOM05D000706 ORTHO05D001633 1.3e-08 64.3 105 41.0
HanXRQChr09g0260881 Helianthus annuus HOM05D000706 ORTHO05D001633 1.3e-08 64.3 70 50.0
Lsat_1_v5_gn_4_152920 Lactuca sativa HOM05D000706 ORTHO05D001633 1.3e-08 64.3 62 51.6
AL3G51260 Arabidopsis lyrata HOM05D000706 ORTHO05D001633 1.8e-08 63.9 105 41.9
Nitab4.5_0005814g0020 Nicotiana tabacum HOM05D000706 ORTHO05D001633 1.8e-08 63.9 47 66.0
Nitab4.5_0016410g0010 Nicotiana tabacum HOM05D000706 ORTHO05D001633 1.8e-08 63.9 47 63.8
Prupe.7G165000 Prunus persica HOM05D000706 ORTHO05D001633 1.8e-08 63.9 91 47.3
Sed0017742 Sechium edule HOM05D000706 ORTHO05D001633 1.8e-08 63.9 47 66.0
Carub.0003s3222 Capsella rubella HOM05D000706 ORTHO05D001633 2.3e-08 63.5 47 66.0
Hma1.2p1_0743F.1_g211440 Hydrangea macrophylla HOM05D000706 ORTHO05D001633 2.3e-08 63.5 126 38.1
Rhsim08G0035300 Rhododendron simsii HOM05D000706 ORTHO05D001633 2.3e-08 63.5 58 55.2
Glyma.11G074600 Glycine max HOM05D000706 ORTHO05D001633 3.0e-08 63.2 95 42.1
Ca_24896_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001633 3.9e-08 62.8 50 60.0
Gohir.D03G011000 Gossypium hirsutum HOM05D000706 ORTHO05D001633 3.9e-08 62.8 66 53.0
Gorai.003G011400 Gossypium raimondii HOM05D000706 ORTHO05D001633 3.9e-08 62.8 66 53.0
Lj4A215G51 Lonicera japonica HOM05D000706 ORTHO05D001633 3.9e-08 62.8 51 62.7
Thhalv10022555m.g Eutrema salsugineum HOM05D000706 ORTHO05D001633 5.1e-08 62.4 48 58.3
FAN28G1501 Fragaria x ananassa HOM05D000706 ORTHO05D001633 5.1e-08 62.4 89 40.4
Psat0s3997g0080 Pisum sativum HOM05D000706 ORTHO05D001633 5.1e-08 62.4 63 54.0
Aa31LG8G13810 Aethionema arabicum HOM05D000706 ORTHO05D001633 6.7e-08 62.0 92 40.2
Migut.L00038 Erythranthe guttata HOM05D000706 ORTHO05D001633 6.7e-08 62.0 47 61.7
BraA09t39878Z Brassica rapa HOM05D000706 ORTHO05D001633 8.7e-08 61.6 92 42.4
VMungo1215G2634 Vigna mungo HOM05D000706 ORTHO05D001633 8.7e-08 61.6 89 42.7
CDE08G0316 Ceratophyllum demersum HOM05D000706 ORTHO05D001633 1.1e-07 61.2 107 39.3
BcaB03g16593 Brassica carinata HOM05D000706 ORTHO05D001633 1.5e-07 60.8 75 45.3
A09p44170 Brassica napus HOM05D000706 ORTHO05D001633 1.5e-07 60.8 92 41.3
Gohir.A02G169000 Gossypium hirsutum HOM05D000706 ORTHO05D001633 1.5e-07 60.8 66 53.0
Nitab4.5_0010830g0010 Nicotiana tabacum HOM05D000706 ORTHO05D001633 1.5e-07 60.8 46 58.7
TAR381G1479 Trochodendron aralioides HOM05D000706 ORTHO05D001633 1.5e-07 60.8 109 37.6
Aa31LG8G15250 Aethionema arabicum HOM05D000706 ORTHO05D001633 1.9e-07 60.5 108 40.7
AL5G31540 Arabidopsis lyrata HOM05D000706 ORTHO05D001633 1.9e-07 60.5 55 56.4
CARHR160720 Cardamine hirsuta HOM05D000706 ORTHO05D001633 1.9e-07 60.5 59 52.5
Lsat_1_v5_gn_2_78401 Lactuca sativa HOM05D000706 ORTHO05D001633 1.9e-07 60.5 68 45.6
BcaB07g31686 Brassica carinata HOM05D000706 ORTHO05D001633 2.5e-07 60.1 46 58.7
A09p11710 Brassica napus HOM05D002906 ORTHO05D003211 2.5e-07 60.1 44 65.9
HanXRQChr13g0414741 Helianthus annuus HOM05D000706 ORTHO05D001633 2.5e-07 60.1 62 50.0
Nitab4.5_0000136g0060 Nicotiana tabacum HOM05D000706 ORTHO05D001633 2.5e-07 60.1 96 40.6
Sed0010303 Sechium edule HOM05D000706 ORTHO05D001633 2.5e-07 60.1 98 35.7
Actinidia00570 Actinidia chinensis HOM05D000706 ORTHO05D001633 3.3e-07 59.7 104 42.3
BcaC04g22931 Brassica carinata HOM05D000706 ORTHO05D001633 3.3e-07 59.7 88 40.9
C09p13780 Brassica napus HOM05D002906 ORTHO05D003211 3.3e-07 59.7 88 40.9
BraA09t36816Z Brassica rapa HOM05D002906 ORTHO05D003211 3.3e-07 59.7 44 65.9
MD15G1249200 Malus domestica HOM05D000706 ORTHO05D001633 3.3e-07 59.7 47 61.7
SalBow8G0912 Salvia bowleyana HOM05D000706 ORTHO05D001633 3.3e-07 59.7 47 59.6
VMungo1215G3412 Vigna mungo HOM05D000706 ORTHO05D001633 3.3e-07 59.7 89 41.6
BolC9t54266H Brassica oleracea HOM05D002906 ORTHO05D003211 4.3e-07 59.3 90 40.0
BraA03t13920Z Brassica rapa HOM05D000706 ORTHO05D001633 4.3e-07 59.3 54 55.6
BcaB01g00548 Brassica carinata HOM05D000706 ORTHO05D001633 5.6e-07 58.9 49 59.2
C08p26390 Brassica napus HOM05D000706 ORTHO05D001633 5.6e-07 58.9 49 59.2
BolC8t50257H Brassica oleracea HOM05D000706 ORTHO05D001633 5.6e-07 58.9 100 43.0
CAN.G693.3 Capsicum annuum HOM05D000706 ORTHO05D001633 5.6e-07 58.9 46 58.7
Migut.H02481 Erythranthe guttata HOM05D000706 ORTHO05D001633 5.6e-07 58.9 47 63.8
Phvul.002G111600 Phaseolus vulgaris HOM05D000706 ORTHO05D001633 5.6e-07 58.9 92 42.4
Solyc02g062370.4 Solanum lycopersicum HOM05D000706 ORTHO05D001633 5.6e-07 58.9 47 63.8
Sopen02g013360 Solanum pennellii HOM05D000706 ORTHO05D001633 5.6e-07 58.9 47 63.8
Carub.0005s1752 Capsella rubella HOM05D000706 ORTHO05D001633 7.4e-07 58.5 63 52.4
Thhalv10010070m.g Eutrema salsugineum HOM05D000706 ORTHO05D001633 7.4e-07 58.5 52 59.6
Oeu021939.1 Olea europaea HOM05D000706 ORTHO05D001633 7.4e-07 58.5 101 36.6
Nn5g29211 Nelumbo nucifera HOM05D000706 ORTHO05D001633 9.6e-07 58.2 47 59.6
Phvul.002G111700 Phaseolus vulgaris HOM05D000706 ORTHO05D001633 9.6e-07 58.2 89 41.6
PGR102G2187 Punica granatum HOM05D000706 ORTHO05D001633 9.6e-07 58.2 82 41.5
Glyma.01G169000 Glycine max HOM05D000706 ORTHO05D001633 1.3e-06 57.8 50 60.0
Sed0026228 Sechium edule HOM05D000706 ORTHO05D001633 1.3e-06 57.8 47 61.7
Solyc02g084510.3 Solanum lycopersicum HOM05D000706 ORTHO05D001633 1.3e-06 57.8 88 40.9
AT3G51120 Arabidopsis thaliana HOM05D000706 ORTHO05D001633 1.6e-06 57.4 50 58.0
Gohir.D10G090700 Gossypium hirsutum HOM05D000706 ORTHO05D001633 1.6e-06 57.4 56 57.1
Gorai.011G099700 Gossypium raimondii HOM05D000706 ORTHO05D001633 1.6e-06 57.4 56 57.1
MD02G1135700 Malus domestica HOM05D000706 ORTHO05D001633 1.6e-06 57.4 60 55.0
PGSC0003DMG401012010 Solanum tuberosum HOM05D000706 ORTHO05D001633 1.6e-06 57.4 47 61.7
BcaC09g50082 Brassica carinata HOM05D000706 ORTHO05D001633 2.1e-06 57.0 50 60.0
A03p48130 Brassica napus HOM05D000706 ORTHO05D001633 2.1e-06 57.0 51 56.9
C01p29300 Brassica napus HOM05D000706 ORTHO05D001633 2.1e-06 57.0 50 60.0
Ca_24897_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001633 2.1e-06 57.0 46 58.7
Glyma.01G168900 Glycine max HOM05D000706 ORTHO05D001633 2.1e-06 57.0 46 60.9
vmacro22093 Vaccinium macrocarpon HOM05D000706 ORTHO05D001633 2.1e-06 57.0 78 43.6
C07p46170 Brassica napus HOM05D000706 ORTHO05D001633 2.8e-06 56.6 62 48.4
BolC1t02856H Brassica oleracea HOM05D000706 ORTHO05D001633 2.8e-06 56.6 49 59.2
BolC7t45133H Brassica oleracea HOM05D000706 ORTHO05D001633 2.8e-06 56.6 62 48.4
Medtr5g021500 Medicago truncatula HOM05D000706 ORTHO05D001633 2.8e-06 56.6 56 55.4
SalBow8G2798 Salvia bowleyana HOM05D000706 ORTHO05D001633 2.8e-06 56.6 47 59.6
ECA246G3409 Erigeron canadensis HOM05D002906 ORTHO05D003211 3.6e-06 56.2 62 46.8
Lj5C190G5 Lonicera japonica HOM05D000706 ORTHO05D001633 3.6e-06 56.2 55 49.1
TPR.G2331 Trifolium pratense HOM05D000706 ORTHO05D001633 3.6e-06 56.2 46 60.9
A07p02570 Brassica napus HOM05D000706 ORTHO05D013538 4.8e-06 55.8 44 61.4
BraA07t28056Z Brassica rapa HOM05D000706 ORTHO05D013538 4.8e-06 55.8 44 61.4
Cfa010509 Carpinus fangiana HOM05D000706 ORTHO05D001633 4.8e-06 55.8 47 57.4
Ciclev10027673m.g Citrus clementina HOM05D000706 ORTHO05D001633 4.8e-06 55.8 80 46.2
Haze_03438 Corylus avellana HOM05D000706 ORTHO05D001633 4.8e-06 55.8 47 57.4
Ah.03g141560 Amaranthus hybridus HOM05D000706 ORTHO05D001633 6.2e-06 55.5 71 42.3
CAN.G358.3 Capsicum annuum HOM05D000706 ORTHO05D001633 6.2e-06 55.5 100 38.0
Cpa.g.sc150.23 Carica papaya HOM05D000706 ORTHO05D001633 6.2e-06 55.5 52 55.8
CDE09G1200 Ceratophyllum demersum HOM05D000706 ORTHO05D001633 6.2e-06 55.5 54 51.9
AUR62007650 Chenopodium quinoa HOM05D000706 ORTHO05D001633 6.2e-06 55.5 51 49.0
Cc07_g10410 Coffea canephora HOM05D000706 ORTHO05D001633 6.2e-06 55.5 105 37.1
TPR.G2360 Trifolium pratense HOM05D000706 ORTHO05D001633 6.2e-06 55.5 46 56.5
TWI75G0983 Tripterygium wilfordii HOM05D000706 ORTHO05D001633 6.2e-06 55.5 67 43.3
TWI75G1073 Tripterygium wilfordii HOM05D000706 ORTHO05D001633 6.2e-06 55.5 47 55.3
HanXRQChr16g0531121 Helianthus annuus HOM05D000706 ORTHO05D001633 8.1e-06 55.1 81 42.0
Lalb_Chr16g0377621 Lupinus albus HOM05D000706 ORTHO05D001633 8.1e-06 55.1 46 63.0
Sed0010772 Sechium edule HOM05D000706 ORTHO05D001633 8.1e-06 55.1 77 40.3


User provided reference genes

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