Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI08019 Sapria himalayana HOM05D007020 ORTHO05D008935 4.3e-281 970.7 495 100.0
Manes.06G014100 Manihot esculenta HOM05D007020 ORTHO05D008935 1.8e-125 453.8 380 61.1
TWI36G0910 Tripterygium wilfordii HOM05D007020 ORTHO05D008935 2.1e-118 430.3 398 58.0
Thecc.08G051000 Theobroma cacao HOM05D007020 ORTHO05D008935 6.0e-118 428.7 364 60.7
Potri.002G016800 Populus trichocarpa HOM05D007020 ORTHO05D008935 3.9e-117 426.0 367 60.8
Duzib093G0969 Durio zibethinus HOM05D007020 ORTHO05D008935 9.6e-116 421.4 364 60.4
Sabra02G0013400 Salix brachista HOM05D007020 ORTHO05D008935 2.1e-115 420.2 389 58.4
Cpa.g.sc26.268 Carica papaya HOM05D007020 ORTHO05D008935 1.1e-114 417.9 422 53.3
Dinv31889 Davidia involucrata HOM05D007020 ORTHO05D008935 1.1e-114 417.9 403 55.1
vmacro21850 Vaccinium macrocarpon HOM05D007020 ORTHO05D008935 1.1e-114 417.9 380 56.6
Haze_22697 Corylus avellana HOM05D007020 ORTHO05D008935 6.9e-114 415.2 399 56.6
GSVIVG01008746001 Vitis vinifera HOM05D007020 ORTHO05D008935 2.6e-113 413.3 398 54.8
Carub.0002s2293 Capsella rubella HOM05D007020 ORTHO05D008935 5.8e-113 412.1 367 58.0
QL02p012883 Quercus lobata HOM05D007020 ORTHO05D008935 5.8e-113 412.1 368 57.3
Gohir.D05G186100 Gossypium hirsutum HOM05D007020 ORTHO05D008935 7.6e-113 411.8 365 58.1
Rhsim06G0012300 Rhododendron simsii HOM05D007020 ORTHO05D008935 1.3e-112 411.0 407 53.8
TAR633G1459 Trochodendron aralioides HOM05D007020 ORTHO05D008935 2.2e-112 410.2 419 51.6
Lj4A801T43 Lonicera japonica HOM05D007020 ORTHO05D008935 4.9e-112 409.1 399 54.1
TAR376G1009 Trochodendron aralioides HOM05D007020 ORTHO05D008935 6.5e-112 408.7 419 52.0
THA.LOC104809629 Tarenaya hassleriana HOM05D007020 ORTHO05D008935 4.2e-111 406.0 363 57.6
PGR031G0358 Punica granatum HOM05D007020 ORTHO05D008935 5.5e-111 405.6 400 54.2
Thhalv10018588m.g Eutrema salsugineum HOM05D007020 ORTHO05D008935 7.1e-111 405.2 367 56.9
BcaC08g47303 Brassica carinata HOM05D007020 ORTHO05D008935 2.1e-110 403.7 379 56.2
CAN.G311.66 Capsicum annuum HOM05D007020 ORTHO05D008935 3.5e-110 402.9 370 55.7
BcaC08g47097 Brassica carinata HOM05D007020 ORTHO05D008935 7.9e-110 401.7 380 54.5
Cc10_g01170 Coffea canephora HOM05D007020 ORTHO05D008935 1.3e-109 401.0 377 55.4
A07p41540 Brassica napus HOM05D007020 ORTHO05D008935 1.8e-109 400.6 380 56.1
Eucgr.F03712 Eucalyptus grandis HOM05D007020 ORTHO05D008935 2.3e-109 400.2 391 53.7
SGA_v2.0_scaffold96G28944 Striga asiatica HOM05D007020 ORTHO05D008935 3.0e-109 399.8 373 56.8
TPR.G38245 Trifolium pratense HOM05D007020 ORTHO05D008935 5.1e-109 399.1 443 50.8
BolC6t40035H Brassica oleracea HOM05D007020 ORTHO05D008935 6.7e-109 398.7 367 57.2
AL2G36070 Arabidopsis lyrata HOM05D007020 ORTHO05D008935 8.7e-109 398.3 368 54.9
BraA07t31686Z Brassica rapa HOM05D007020 ORTHO05D008935 1.1e-108 397.9 380 55.8
CARHR069580 Cardamine hirsuta HOM05D007020 ORTHO05D008935 2.5e-108 396.7 364 55.5
Solyc04g081920.3 Solanum lycopersicum HOM05D007020 ORTHO05D008935 2.5e-108 396.7 377 53.6
Ca_15469_v3 Cicer arietinum L. HOM05D007020 ORTHO05D008935 3.3e-108 396.4 391 52.4
PGSC0003DMG400009884 Solanum tuberosum HOM05D007020 ORTHO05D008935 4.3e-108 396.0 377 54.1
Phvul.009G019500 Phaseolus vulgaris HOM05D007020 ORTHO05D008935 5.7e-108 395.6 435 50.6
Glyma.04G020900 Glycine max HOM05D007020 ORTHO05D008935 7.4e-108 395.2 381 55.4
Aqoxy6G02012 Aquilegia oxysepala HOM05D007020 ORTHO05D008935 2.2e-107 393.7 363 56.2
AT1G76050 Arabidopsis thaliana HOM05D007020 ORTHO05D008935 2.8e-107 393.3 365 54.8
arahy.Tifrunner.gnm1.ann1.W20NI2 Arachis hypogaea HOM05D007020 ORTHO05D008935 3.7e-107 392.9 406 52.7
CDE02G2299 Ceratophyllum demersum HOM05D000059 ORTHO05D008935 4.8e-107 392.5 375 53.9
arahy.Tifrunner.gnm1.ann1.YGS75T Arachis hypogaea HOM05D007020 ORTHO05D008935 1.4e-106 391.0 406 52.5
ClCG08G014040 Citrullus lanatus HOM05D007020 ORTHO05D008935 1.8e-106 390.6 368 54.9
Medtr3g114540 Medicago truncatula HOM05D007020 ORTHO05D008935 1.8e-106 390.6 413 52.5
Psat5g012400 Pisum sativum HOM05D007020 ORTHO05D008935 2.4e-106 390.2 401 52.6
PSO170G4315 Papaver somniferum HOM05D007020 ORTHO05D008935 4.1e-106 389.4 397 53.1
CsaV3_2G024410 Cucumis sativus L. HOM05D007020 ORTHO05D008935 9.0e-106 388.3 410 51.2
Migut.C00895 Erythranthe guttata HOM05D007020 ORTHO05D008935 9.0e-106 388.3 381 53.8
Sc26g0004460 Simmondsia chinensis HOM05D007020 ORTHO05D008935 1.2e-105 387.9 375 54.9
C06p49960 Brassica napus HOM05D007020 ORTHO05D008935 1.5e-105 387.5 404 53.0
Lj1g0017386 Lotus japonicus HOM05D007020 ORTHO05D008935 1.5e-105 387.5 372 55.4
DCAR_022941 Daucus carota HOM05D007020 ORTHO05D008935 2.6e-105 386.7 390 52.6
Nitab4.5_0003030g0130 Nicotiana tabacum HOM05D007020 ORTHO05D008935 2.6e-105 386.7 395 51.6
ECA232G4433 Erigeron canadensis HOM05D007020 ORTHO05D008935 1.3e-104 384.4 393 53.7
Lalb_Chr08g0246281 Lupinus albus HOM05D007020 ORTHO05D008935 3.8e-104 382.9 417 51.1
Sed0026116 Sechium edule HOM05D007020 ORTHO05D008935 3.8e-104 382.9 381 53.5
Peaxi162Scf00174g00717 Petunia axillaris HOM05D007020 ORTHO05D008935 6.5e-104 382.1 374 54.0
Aa31LG4G6160 Aethionema arabicum HOM05D000059 ORTHO05D000128 5.5e-103 379.0 391 51.9
HanXRQChr05g0146601 Helianthus annuus HOM05D007020 ORTHO05D008935 7.2e-103 378.6 407 50.6
MBI17_g14568_MAGBIO Magnolia biondii HOM05D007020 ORTHO05D008935 5.1e-101 372.5 381 57.5
VMungo1309G1583 Vigna mungo HOM05D007020 ORTHO05D008935 4.3e-100 369.4 457 47.3
Gorai.009G191500 Gossypium raimondii HOM05D000059 ORTHO05D008935 2.8e-99 366.7 331 58.6
AUR62013887 Chenopodium quinoa HOM05D007020 ORTHO05D008935 4.8e-99 365.9 397 51.4
ATR0661G229 Amborella trichopoda HOM05D007020 ORTHO05D008935 5.3e-98 362.5 365 51.0
Ah.11g040270 Amaranthus hybridus HOM05D007020 ORTHO05D008935 6.9e-98 362.1 397 50.1
Os06g0717400 Oryza sativa ssp. japonica HOM05D007020 ORTHO05D008935 1.0e-96 358.2 374 51.6
Hund05155 Selenicereus undatus HOM05D007020 ORTHO05D008935 1.7e-96 357.5 368 52.2
EL10Ac1g02092 Beta vulgaris HOM05D007020 ORTHO05D008935 3.2e-95 353.2 369 52.0
MELO3C011342.2 Cucumis melo HOM05D007020 ORTHO05D008935 1.0e-93 348.2 333 56.2
SEGI_18542 Sequoiadendron giganteum HOM05D007020 ORTHO05D008935 1.5e-92 344.4 415 45.8
Gohir.A05G183200 Gossypium hirsutum HOM05D007020 ORTHO05D008935 3.3e-92 343.2 306 59.2
Oeu014023.1 Olea europaea HOM05D007020 ORTHO05D008935 5.0e-88 329.3 479 41.8
HPP92_004932 Vanilla planifolia HOM05D007020 ORTHO05D008935 8.8e-85 318.5 316 52.5
AUR62036707 Chenopodium quinoa HOM05D007020 ORTHO05D008935 3.5e-81 306.6 316 50.9
COL.COLO4_26091 Corchorus olitorius HOM05D007020 ORTHO05D008935 1.3e-80 304.7 260 63.5
Ciclev10001736m.g Citrus clementina HOM05D007020 ORTHO05D008935 1.7e-80 304.3 275 58.9
Pp3c21_5880 Physcomitrium patens HOM05D007020 ORTHO05D008935 2.2e-80 303.9 415 42.7
Actinidia17018 Actinidia chinensis HOM05D007020 ORTHO05D008935 3.8e-80 303.1 411 44.8
Atru.chr13.224 Acer truncatum HOM05D007020 ORTHO05D008935 1.9e-79 300.8 283 57.2
CiPaw.07G144000 Carya illinoinensis HOM05D007020 ORTHO05D008935 7.2e-79 298.9 309 55.0
Sp5g31160 Schrenkiella parvula HOM05D007020 ORTHO05D008935 1.7e-75 287.7 246 59.8
AagrBONN_evm.TU.Sc2ySwM_228.144 Anthoceros agrestis HOM05D007020 ORTHO05D008935 3.7e-75 286.6 372 46.0
SalBow7G4579 Salvia bowleyana HOM05D000001 ORTHO05D009837 1.2e-73 281.6 270 55.6
MSTRG.25275 Avicennia marina HOM05D000001 ORTHO05D009837 7.7e-73 278.9 280 52.9
Lsat_1_v5_gn_0_761 Lactuca sativa HOM05D007020 ORTHO05D008935 3.8e-72 276.6 288 52.8
Cfa014002 Carpinus fangiana HOM05D007020 ORTHO05D008935 2.1e-70 270.8 281 54.1
Hma1.2p1_1598F.1_g292900 Hydrangea macrophylla HOM05D007020 ORTHO05D008935 1.8e-69 267.7 282 52.8
Nn3g20659 Nelumbo nucifera HOM05D007020 ORTHO05D008935 9.8e-68 261.9 233 56.7
SMO169G0131 Selaginella moellendorffii HOM05D007020 ORTHO05D008935 1.2e-62 245.0 378 39.9
SGA_v2.0_scaffold173G39193 Striga asiatica HOM05D003133 ORTHO05D003642 5.7e-60 236.1 271 49.4
Zm00001eb272250 Zea mays HOM05D007020 ORTHO05D008935 3.1e-58 230.3 244 51.6
PRCOL_00000246 Prasinoderma coloniale HOM05D007020 ORTHO05D008935 8.6e-56 222.2 374 39.0
Glyma.06G021100 Glycine max HOM05D007020 ORTHO05D008935 2.5e-55 220.7 217 49.8
CBR_g29446 Chara braunii HOM05D007020 ORTHO05D008935 2.6e-52 210.7 444 33.8
Hma1.2p1_1598F.1_g292910 Hydrangea macrophylla HOM05D007020 ORTHO05D008935 1.1e-50 205.3 169 59.2
MCO01G778 Micromonas commoda HOM05D007020 ORTHO05D008935 1.1e-50 205.3 328 39.3
Cre02.g078750 Chlamydomonas reinhardtii HOM05D007020 ORTHO05D008935 4.6e-49 199.9 373 35.7
Mapoly0092s0023 Marchantia polymorpha HOM05D007020 ORTHO05D008935 7.8e-49 199.1 294 41.8
Sopen04g035560 Solanum pennellii HOM05D007020 ORTHO05D008935 1.7e-43 181.4 189 50.8
Pp3s46_330 Physcomitrium patens HOM05D007020 ORTHO05D008935 2.8e-38 164.1 325 33.2
Thecc.08G050800 Theobroma cacao HOM05D007020 ORTHO05D008935 2.0e-36 157.9 229 42.4
SMO169G0259 Selaginella moellendorffii HOM05D007020 ORTHO05D008935 3.4e-28 130.6 187 40.1
CSS0023482 Camellia sinensis var. sinensis HOM05D007020 ORTHO05D008935 2.7e-25 120.9 211 42.7
TAR369G0870 Trochodendron aralioides HOM05D000901 ORTHO05D008935 2.2e-19 101.3 85 62.4
Glyma.06G021150 Glycine max HOM05D007020 ORTHO05D008935 2.1e-14 84.7 78 56.4
Sp5g31170 Schrenkiella parvula HOM05D007020 ORTHO05D008935 7.6e-12 76.3 71 46.5
PRCOL_00002894 Prasinoderma coloniale HOM05D006623 ORTHO05D008102 1.7e-11 75.1 236 28.4
PRCOL_00005352 Prasinoderma coloniale HOM05D007020 ORTHO05D008935 3.8e-11 73.9 283 27.2
HanXRQChr13g0423521 Helianthus annuus HOM05D007020 ORTHO05D008935 5.4e-10 70.1 58 53.4
AUR62036706 Chenopodium quinoa HOM05D007020 ORTHO05D000002 1.0e-08 65.9 103 39.8
SMO169G0279 Selaginella moellendorffii HOM05D007020 ORTHO05D008935 3.0e-08 64.3 120 38.3
AagrBONN_evm.TU.Sc2ySwM_344.689 Anthoceros agrestis HOM05D006791 ORTHO05D008221 3.9e-08 63.9 211 28.9
Actinidia15460 Actinidia chinensis HOM05D007020 ORTHO05D008935 2.1e-06 58.2 78 44.9
MCO11G777 Micromonas commoda HOM05D007020 ORTHO05D008935 3.7e-06 57.4 251 27.9


User provided reference genes

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