Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 1.4e-201 706.1 352 100.0
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 1.7e-119 433.3 357 63.9
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 7.3e-118 427.9 357 62.5
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 1.5e-115 420.2 357 61.3
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 7.6e-115 417.9 361 59.8
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 2.2e-114 416.4 356 60.4
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 6.4e-114 414.8 378 58.5
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 2.4e-113 412.9 357 61.1
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 2.4e-113 412.9 357 59.7
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 4.2e-113 412.1 357 59.4
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 9.3e-113 411.0 357 59.9
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 1.6e-112 410.2 364 59.6
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 2.1e-112 409.8 364 59.3
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 3.5e-112 409.1 356 59.8
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 3.5e-112 409.1 355 59.4
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 4.6e-112 408.7 357 59.9
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 6.0e-112 408.3 356 59.8
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 7.8e-112 407.9 356 59.3
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 3.0e-111 406.0 356 59.6
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 3.9e-111 405.6 360 59.2
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 3.9e-111 405.6 355 60.3
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.9e-110 403.3 358 57.8
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 1.9e-110 403.3 356 59.6
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 1.9e-110 403.3 353 60.3
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 2.5e-110 402.9 364 58.5
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 2.5e-110 402.9 356 59.0
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 4.3e-110 402.1 356 59.0
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 5.6e-110 401.7 356 58.7
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 5.6e-110 401.7 354 57.6
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 7.3e-110 401.4 357 58.5
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 9.6e-110 401.0 358 59.5
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 1.3e-109 400.6 362 58.6
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 1.3e-109 400.6 356 58.7
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 2.8e-109 399.4 357 59.7
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 2.8e-109 399.4 363 58.4
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 2.8e-109 399.4 355 58.3
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 2.8e-109 399.4 357 59.1
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 3.6e-109 399.1 356 59.0
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 4.8e-109 398.7 355 57.5
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 4.8e-109 398.7 354 57.6
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 1.8e-108 396.7 356 57.3
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 1.8e-108 396.7 357 59.4
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 2.4e-108 396.4 360 57.8
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 3.1e-108 396.0 354 59.0
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 3.1e-108 396.0 356 58.1
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 3.1e-108 396.0 358 58.4
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 4.0e-108 395.6 358 58.4
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 5.3e-108 395.2 356 58.1
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 9.0e-108 394.4 359 58.5
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 1.2e-107 394.0 356 58.4
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 1.2e-107 394.0 356 57.6
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 1.5e-107 393.7 373 56.8
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 7.6e-107 391.3 356 57.9
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 7.6e-107 391.3 345 59.1
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.3e-106 390.6 365 57.3
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 4.9e-106 388.7 355 56.3
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 4.9e-106 388.7 350 58.3
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 4.9e-106 388.7 356 57.6
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 8.4e-106 387.9 355 56.6
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 8.4e-106 387.9 356 57.9
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 8.4e-106 387.9 356 57.9
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 3.2e-105 386.0 360 58.1
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.2e-104 384.0 337 58.8
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 1.6e-104 383.6 354 57.9
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 1.0e-103 380.9 354 56.5
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 1.7e-103 380.2 363 56.5
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 3.0e-103 379.4 357 55.5
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 3.0e-103 379.4 357 56.0
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.9e-102 376.7 366 56.3
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 5.3e-100 368.6 353 56.9
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 3.4e-99 365.9 354 55.6
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 9.9e-99 364.4 364 56.9
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 9.9e-99 364.4 364 56.3
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 1.7e-98 363.6 363 56.2
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 4.9e-98 362.1 364 56.6
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 4.9e-98 362.1 360 56.9
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 6.4e-98 361.7 360 55.6
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 1.1e-97 360.9 355 57.2
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 1.9e-97 360.1 314 60.5
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 2.4e-97 359.8 344 55.8
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 2.4e-97 359.8 355 54.4
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 4.2e-97 359.0 364 55.8
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 4.2e-97 359.0 307 61.6
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 5.5e-97 358.6 359 56.0
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 5.5e-97 358.6 361 56.0
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 1.6e-96 357.1 383 53.8
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 2.7e-96 356.3 360 55.3
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 6.0e-96 355.1 384 52.1
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 1.0e-95 354.4 365 54.5
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 2.5e-94 349.7 356 56.7
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 8.1e-93 344.7 364 52.5
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 1.5e-91 340.5 369 51.8
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 2.2e-90 336.7 302 56.6
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 2.2e-90 336.7 361 51.2
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 1.9e-89 333.6 352 53.7
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 4.6e-88 328.9 355 49.3
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 1.8e-87 327.0 326 55.5
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.8e-87 327.0 365 50.1
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 3.9e-87 325.9 356 51.1
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 1.1e-81 307.8 359 46.8
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 4.6e-80 302.4 335 48.7
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 6.1e-80 302.0 276 57.2
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 4.1e-76 289.3 353 46.7
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 1.0e-74 284.6 357 45.9
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 4.2e-73 279.3 302 51.3
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.2e-72 277.7 370 46.5
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 3.3e-70 269.6 360 41.4
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 7.7e-67 258.5 346 42.2
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 4.2e-65 252.7 244 55.3
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 3.9e-63 246.1 415 36.6
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 1.2e-56 224.6 303 44.9
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 8.2e-53 211.8 203 55.7
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 1.6e-51 207.6 214 51.9
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 2.0e-51 207.2 277 44.4
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 1.7e-50 204.1 354 40.4
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 3.8e-50 203.0 162 61.7
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 5.0e-50 202.6 175 55.4
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 1.1e-49 201.4 162 60.5
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 2.7e-48 196.8 211 49.8
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 3.4e-46 189.9 159 61.6
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 1.8e-44 184.1 162 58.6
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.1e-40 170.6 148 61.5
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.3e-37 161.4 121 66.9
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 4.9e-37 159.5 248 38.7
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 3.1e-36 156.8 121 65.3
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 6.6e-34 149.1 143 58.0
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 8.0e-32 142.1 112 59.8
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 7.5e-30 135.6 133 55.6
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 2.2e-29 134.0 183 44.3
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 4.1e-28 129.8 121 59.5
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 7.0e-28 129.0 98 66.3
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 3.0e-26 123.6 162 43.2
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 2.1e-24 117.5 159 42.1
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 6.2e-24 115.9 114 54.4
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 4.1e-20 103.2 72 66.7
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 3.3e-17 93.6 87 51.7
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 7.3e-17 92.4 399 22.8
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 9.5e-17 92.0 72 62.5
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-14 84.0 156 30.8
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.4e-12 78.2 76 46.1


User provided reference genes

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