Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI01116 Sapria himalayana HOM05D003208 ORTHO05D004103 2.6e-100 368.6 176 100.0
Manes.12G131000 Manihot esculenta HOM05D003208 ORTHO05D004103 3.5e-44 182.2 150 62.7
Potri.007G096100 Populus trichocarpa HOM05D003208 ORTHO05D004103 1.5e-42 176.8 148 60.1
Cpa.g.sc55.83 Carica papaya HOM05D003208 ORTHO05D004103 1.9e-42 176.4 150 59.3
Nitab4.5_0000128g0250 Nicotiana tabacum HOM05D003208 ORTHO05D004103 9.5e-42 174.1 154 55.2
Sabra07G0079200 Salix brachista HOM05D003208 ORTHO05D004103 2.1e-41 172.9 148 58.8
TWI74G0107 Tripterygium wilfordii HOM05D003208 ORTHO05D004103 3.6e-41 172.2 148 58.1
Cfa002613 Carpinus fangiana HOM05D003208 ORTHO05D004103 1.4e-40 170.2 156 56.4
Thhalv10000050m.g Eutrema salsugineum HOM05D003208 ORTHO05D004103 2.3e-40 169.5 149 56.4
BcaC02g08664 Brassica carinata HOM05D003208 ORTHO05D004103 5.2e-40 168.3 157 54.1
BcaC02g08665 Brassica carinata HOM05D003208 ORTHO05D004103 5.2e-40 168.3 157 54.1
HanXRQChr07g0196311 Helianthus annuus HOM05D003208 ORTHO05D004103 5.2e-40 168.3 160 53.8
A09p57600 Brassica napus HOM05D003208 ORTHO05D004103 1.2e-39 167.2 157 54.8
Nitab4.5_0012684g0010 Nicotiana tabacum HOM05D003208 ORTHO05D004103 1.2e-39 167.2 156 53.2
QL06p048297 Quercus lobata HOM05D003208 ORTHO05D004103 1.2e-39 167.2 156 53.8
vmacro12976 Vaccinium macrocarpon HOM05D003208 ORTHO05D004103 1.2e-39 167.2 172 52.9
Rhsim10G0166900 Rhododendron simsii HOM05D003208 ORTHO05D004103 1.5e-39 166.8 156 55.8
Duzib147G1622 Durio zibethinus HOM05D003208 ORTHO05D004103 2.0e-39 166.4 150 56.7
Sp4g01430 Schrenkiella parvula HOM05D003208 ORTHO05D004103 2.6e-39 166.0 157 54.8
BcaB08g35063 Brassica carinata HOM05D003208 ORTHO05D004103 3.4e-39 165.6 157 54.1
BolC4t26736H Brassica oleracea HOM05D003208 ORTHO05D004103 3.4e-39 165.6 149 55.0
CiPaw.03G144800 Carya illinoinensis HOM05D003208 ORTHO05D004103 3.4e-39 165.6 154 54.5
CsaV3_6G045280 Cucumis sativus L. HOM05D003208 ORTHO05D004103 3.4e-39 165.6 154 55.8
A04p16880 Brassica napus HOM05D003208 ORTHO05D004103 4.4e-39 165.2 149 55.7
BraA04t17321Z Brassica rapa HOM05D003208 ORTHO05D004103 4.4e-39 165.2 149 55.7
AL4G11900 Arabidopsis lyrata HOM05D003208 ORTHO05D004103 5.8e-39 164.9 152 54.6
BraA09t41152Z Brassica rapa HOM05D003208 ORTHO05D004103 9.9e-39 164.1 157 54.1
Thecc.01G096900 Theobroma cacao HOM05D003208 ORTHO05D004103 9.9e-39 164.1 150 56.0
Lj4g0011115 Lotus japonicus HOM05D003208 ORTHO05D004103 1.3e-38 163.7 153 52.9
Psat7g057040 Pisum sativum HOM05D003208 ORTHO05D004103 1.3e-38 163.7 154 52.6
Gohir.A02G129100 Gossypium hirsutum HOM05D003208 ORTHO05D004103 1.7e-38 163.3 152 57.2
Lsat_1_v5_gn_5_45360 Lactuca sativa HOM05D003208 ORTHO05D004103 1.7e-38 163.3 148 57.4
SGA_v2.0_scaffold111G31500 Striga asiatica HOM05D003208 ORTHO05D004103 1.7e-38 163.3 167 50.3
BcaC02g08709 Brassica carinata HOM05D003208 ORTHO05D004103 2.2e-38 162.9 149 54.4
C04p51440 Brassica napus HOM05D003208 ORTHO05D004103 2.2e-38 162.9 149 54.4
CAN.G151.12 Capsicum annuum HOM05D003208 ORTHO05D004103 2.2e-38 162.9 155 52.9
Prupe.6G191700 Prunus persica HOM05D003208 ORTHO05D004103 2.9e-38 162.5 171 54.4
RcHm_v2.0_Chr2g0112501 Rosa chinensis HOM05D003208 ORTHO05D004103 2.9e-38 162.5 156 55.8
COL.COLO4_27282 Corchorus olitorius HOM05D003208 ORTHO05D004103 3.7e-38 162.2 149 55.7
ECA246G0394 Erigeron canadensis HOM05D003208 ORTHO05D004103 4.9e-38 161.8 149 57.0
Aa31LG7G14430 Aethionema arabicum HOM05D003208 ORTHO05D004103 6.4e-38 161.4 155 56.1
AT2G22400 Arabidopsis thaliana HOM05D003208 ORTHO05D004103 6.4e-38 161.4 152 53.9
CARHR113590 Cardamine hirsuta HOM05D003208 ORTHO05D004103 6.4e-38 161.4 152 52.0
ClCG01G018610 Citrullus lanatus HOM05D003208 ORTHO05D004103 6.4e-38 161.4 148 56.1
MD01G1034300 Malus domestica HOM05D003208 ORTHO05D004103 6.4e-38 161.4 156 53.8
CANSAT01G1547 Cannabis sativa HOM05D003208 ORTHO05D004103 1.4e-37 160.2 156 55.1
GSVIVG01003416001 Vitis vinifera HOM05D003208 ORTHO05D004103 1.4e-37 160.2 154 55.2
Dinv13221 Davidia involucrata HOM05D003208 ORTHO05D004103 1.9e-37 159.8 156 51.9
Lalb_Chr07g0185301 Lupinus albus HOM05D003208 ORTHO05D004103 1.9e-37 159.8 155 51.0
Peaxi162Scf00044g00112 Petunia axillaris HOM05D003208 ORTHO05D004103 1.9e-37 159.8 156 51.3
Peaxi162Scf00381g00061 Petunia axillaris HOM05D003208 ORTHO05D004103 1.9e-37 159.8 156 51.3
TWI77G0296 Tripterygium wilfordii HOM05D003208 ORTHO05D004103 1.9e-37 159.8 151 57.0
arahy.Tifrunner.gnm1.ann1.56KYQ9 Arachis hypogaea HOM05D003208 ORTHO05D004103 2.4e-37 159.5 155 52.9
Psat4g135800 Pisum sativum HOM05D003208 ORTHO05D015518 2.4e-37 159.5 152 51.3
Sopen05g029940 Solanum pennellii HOM05D003208 ORTHO05D004103 2.4e-37 159.5 156 51.9
MELO3C007741.2 Cucumis melo HOM05D003208 ORTHO05D004103 3.2e-37 159.1 154 53.9
Actinidia19997 Actinidia chinensis HOM05D003208 ORTHO05D004103 4.1e-37 158.7 156 53.2
EL10Ac6g14824 Beta vulgaris HOM05D003208 ORTHO05D004103 4.1e-37 158.7 154 56.5
Migut.H02342 Erythranthe guttata HOM05D003208 ORTHO05D004103 4.1e-37 158.7 156 55.1
BcaC07g41076 Brassica carinata HOM05D003208 ORTHO05D004103 5.4e-37 158.3 148 53.4
BolC8t51644H Brassica oleracea HOM05D003208 ORTHO05D004103 5.4e-37 158.3 148 53.4
Glyma.08G133700 Glycine max HOM05D003208 ORTHO05D004103 5.4e-37 158.3 153 51.6
Nitab4.5_0000241g0270 Nicotiana tabacum HOM05D003208 ORTHO05D004103 5.4e-37 158.3 157 52.2
AUR62003252 Chenopodium quinoa HOM05D003208 ORTHO05D004103 7.1e-37 157.9 153 56.2
Sed0018597 Sechium edule HOM05D003208 ORTHO05D004103 7.1e-37 157.9 153 52.9
Solyc05g051520.3 Solanum lycopersicum HOM05D003208 ORTHO05D004103 7.1e-37 157.9 156 51.3
Solyc11g010110.3 Solanum lycopersicum HOM05D003208 ORTHO05D004103 9.2e-37 157.5 156 51.3
Phvul.002G261300 Phaseolus vulgaris HOM05D003208 ORTHO05D004103 1.2e-36 157.1 152 50.7
AUR62027218 Chenopodium quinoa HOM05D003208 ORTHO05D004103 1.6e-36 156.8 151 55.6
Ciclev10024895m.g Citrus clementina HOM05D003208 ORTHO05D004103 1.6e-36 156.8 150 52.7
Hma1.2p1_0019F.1_g013690 Hydrangea macrophylla HOM05D003208 ORTHO05D004103 1.6e-36 156.8 157 53.5
Sopen11g004910 Solanum pennellii HOM05D003208 ORTHO05D004103 1.6e-36 156.8 156 50.0
Ah.02g126130 Amaranthus hybridus HOM05D003208 ORTHO05D004103 2.1e-36 156.4 160 53.1
FAN23G1395 Fragaria x ananassa HOM05D003208 ORTHO05D004103 2.1e-36 156.4 154 53.9
Gorai.003G041000 Gossypium raimondii HOM05D003208 ORTHO05D004103 2.7e-36 156.0 170 51.8
Lalb_Chr13g0295911 Lupinus albus HOM05D003208 ORTHO05D004103 2.7e-36 156.0 154 51.9
FvH4_1g20370 Fragaria vesca HOM05D003208 ORTHO05D004103 3.5e-36 155.6 154 53.9
CDE10G0727 Ceratophyllum demersum HOM05D003208 ORTHO05D004103 4.6e-36 155.2 164 50.0
Ca_17757_v3 Cicer arietinum L. HOM05D003208 ORTHO05D004103 4.6e-36 155.2 154 51.3
Cc07_g14750 Coffea canephora HOM05D003208 ORTHO05D004103 4.6e-36 155.2 156 55.8
VMungo1383G1326 Vigna mungo HOM05D003208 ORTHO05D004103 4.6e-36 155.2 155 51.0
Gohir.D03G039900 Gossypium hirsutum HOM05D003208 ORTHO05D004103 6.0e-36 154.8 170 51.2
MD15G1321600 Malus domestica HOM05D003208 ORTHO05D004103 6.0e-36 154.8 158 51.9
PGSC0003DMG400016157 Solanum tuberosum HOM05D003208 ORTHO05D004103 1.3e-35 153.7 156 50.0
Aa31LG6G15240 Aethionema arabicum HOM05D003208 ORTHO05D004103 2.3e-35 152.9 148 52.7
Lj2C541T5 Lonicera japonica HOM05D003208 ORTHO05D004103 2.3e-35 152.9 169 49.1
Medtr3g086950 Medicago truncatula HOM05D003208 ORTHO05D004103 2.3e-35 152.9 150 55.3
SalBow3G0841 Salvia bowleyana HOM05D003208 ORTHO05D004103 2.3e-35 152.9 158 52.5
SalBow3G1582 Salvia bowleyana HOM05D003208 ORTHO05D004103 2.3e-35 152.9 158 52.5
CAN.G905.28 Capsicum annuum HOM05D003208 ORTHO05D004103 3.0e-35 152.5 156 50.6
Nitab4.5_0002604g0040 Nicotiana tabacum HOM05D003208 ORTHO05D004103 3.0e-35 152.5 157 50.3
PSO675G9385 Papaver somniferum HOM05D003208 ORTHO05D004103 3.0e-35 152.5 162 50.6
Sed0002614 Sechium edule HOM05D003208 ORTHO05D004103 3.0e-35 152.5 154 52.6
TPR.G15995 Trifolium pratense HOM05D003208 ORTHO05D004103 3.0e-35 152.5 150 54.7
Atru.chr3.1361 Acer truncatum HOM05D003208 ORTHO05D004103 3.9e-35 152.1 150 52.0
C08p40800 Brassica napus HOM05D003208 ORTHO05D004103 3.9e-35 152.1 149 52.3
PSO675G0282 Papaver somniferum HOM05D003208 ORTHO05D004103 5.1e-35 151.8 161 51.6
FAN28G0091 Fragaria x ananassa HOM05D003208 ORTHO05D004103 6.6e-35 151.4 154 53.2
Aqoxy6G00734 Aquilegia oxysepala HOM05D003208 ORTHO05D004103 8.6e-35 151.0 169 50.9
Medtr8g089980 Medicago truncatula HOM05D003208 ORTHO05D004103 8.6e-35 151.0 154 49.4
THA.LOC104807678 Tarenaya hassleriana HOM05D003208 ORTHO05D004103 8.6e-35 151.0 151 52.3
Zm00001eb033550 Zea mays HOM05D003208 ORTHO05D004103 8.6e-35 151.0 166 51.2
Glyma.11G241400 Glycine max HOM05D003208 ORTHO05D004103 1.1e-34 150.6 164 47.0
TAR628G1304 Trochodendron aralioides HOM05D003208 ORTHO05D004103 1.1e-34 150.6 175 51.4
VMungo0251G3398 Vigna mungo HOM05D003208 ORTHO05D004103 1.5e-34 150.2 160 51.9
Eucgr.H04746 Eucalyptus grandis HOM05D003208 ORTHO05D004103 1.9e-34 149.8 153 51.6
Oeu056635.1 Olea europaea HOM05D003208 ORTHO05D004103 1.9e-34 149.8 156 50.6
Os08g0484400 Oryza sativa ssp. japonica HOM05D003208 ORTHO05D004103 2.5e-34 149.4 167 50.3
DCAR_003477 Daucus carota HOM05D003208 ORTHO05D004103 4.3e-34 148.7 156 53.2
FAN26G2141 Fragaria x ananassa HOM05D003208 ORTHO05D004103 4.3e-34 148.7 154 51.9
MBI02_g27964_MAGBIO Magnolia biondii HOM05D003208 ORTHO05D004103 4.3e-34 148.7 183 46.4
Os09g0471900 Oryza sativa ssp. japonica HOM05D003208 ORTHO05D004103 4.3e-34 148.7 188 47.3
Mapoly0022s0008 Marchantia polymorpha HOM05D003208 ORTHO05D004103 5.6e-34 148.3 160 49.4
TPR.G6241 Trifolium pratense HOM05D003208 ORTHO05D004103 5.6e-34 148.3 154 48.7
Psat5g090760 Pisum sativum HOM05D003208 ORTHO05D004103 7.3e-34 147.9 151 53.6
Carub.0004s0156 Capsella rubella HOM05D003208 ORTHO05D004103 9.5e-34 147.5 148 51.4
PSO541G6125 Papaver somniferum HOM05D003208 ORTHO05D004103 1.6e-33 146.7 176 44.9
BraA01t00090Z Brassica rapa HOM05D003208 ORTHO05D004103 2.1e-33 146.4 148 53.4
AL7G12310 Arabidopsis lyrata HOM05D003208 ORTHO05D004103 2.8e-33 146.0 148 51.4
Carub.0007s0196 Capsella rubella HOM05D003208 ORTHO05D004103 2.8e-33 146.0 148 52.0
CARHR246680 Cardamine hirsuta HOM05D003208 ORTHO05D004103 2.8e-33 146.0 148 51.4
Eucgr.I00532 Eucalyptus grandis HOM05D003208 ORTHO05D004103 2.8e-33 146.0 148 53.4
Ca_04837_v3 Cicer arietinum L. HOM05D003208 ORTHO05D015518 6.2e-33 144.8 154 48.1
Thhalv10024482m.g Eutrema salsugineum HOM05D003208 ORTHO05D004103 6.2e-33 144.8 148 51.4
Phvul.001G253400 Phaseolus vulgaris HOM05D003208 ORTHO05D004103 6.2e-33 144.8 165 45.5
PGR102G0950 Punica granatum HOM05D003208 ORTHO05D004103 6.2e-33 144.8 152 50.7
arahy.Tifrunner.gnm1.ann1.G6ARYH Arachis hypogaea HOM05D003208 ORTHO05D004103 8.1e-33 144.4 166 48.2
A01p00920 Brassica napus HOM05D003208 ORTHO05D004103 8.1e-33 144.4 148 52.0
unitig_699.g19581 Utricularia gibba HOM05D003208 ORTHO05D004103 8.1e-33 144.4 151 51.0
Ca_16514_v3 Cicer arietinum L. HOM05D003208 ORTHO05D004103 1.1e-32 144.1 148 53.4
Lj6g0024442 Lotus japonicus HOM05D003208 ORTHO05D004103 1.4e-32 143.7 156 51.9
Sp7g35870 Schrenkiella parvula HOM05D003208 ORTHO05D004103 1.4e-32 143.7 148 50.0
BcaNung05188 Brassica carinata HOM05D003208 ORTHO05D004103 1.8e-32 143.3 148 54.1
BolC1t00102H Brassica oleracea HOM05D003208 ORTHO05D004103 1.8e-32 143.3 148 52.7
Nn5g30027 Nelumbo nucifera HOM05D003208 ORTHO05D004103 1.8e-32 143.3 173 49.1
AT4G40000 Arabidopsis thaliana HOM05D003208 ORTHO05D004103 2.4e-32 142.9 148 52.7
C01p01050 Brassica napus HOM05D003208 ORTHO05D004103 2.4e-32 142.9 148 52.7
Psat6g077920 Pisum sativum HOM05D003208 ORTHO05D009148 2.4e-32 142.9 149 55.0
BcaNung00929 Brassica carinata HOM05D003208 ORTHO05D004103 3.1e-32 142.5 148 52.0
MSTRG.2578 Avicennia marina HOM05D003208 ORTHO05D004103 4.0e-32 142.1 155 48.4
Sc03g0000100 Simmondsia chinensis HOM05D003208 ORTHO05D004103 5.2e-32 141.7 148 51.4
PGR004G2195 Punica granatum HOM05D003208 ORTHO05D004103 6.8e-32 141.4 157 49.0
HPP92_013098 Vanilla planifolia HOM05D003208 ORTHO05D004103 8.9e-32 141.0 179 46.9
HPP92_013110 Vanilla planifolia HOM05D003208 ORTHO05D004103 1.5e-31 140.2 179 46.9
Psat7g145480 Pisum sativum HOM05D003208 ORTHO05D004103 2.6e-31 139.4 151 51.0
ATR0684G089 Amborella trichopoda HOM05D003208 ORTHO05D004103 3.4e-31 139.0 167 46.7
Zm00001eb315780 Zea mays HOM05D003208 ORTHO05D004103 7.6e-31 137.9 191 42.9
SMO165G0121 Selaginella moellendorffii HOM05D003208 ORTHO05D004103 1.9e-29 133.3 151 49.0
Pp3c15_5210 Physcomitrium patens HOM05D003208 ORTHO05D004103 1.6e-28 130.2 150 48.7
Pp3c15_5220 Physcomitrium patens HOM05D003208 ORTHO05D004103 1.6e-28 130.2 150 48.7
PSO675G5792 Papaver somniferum HOM05D003208 ORTHO05D004103 3.9e-27 125.6 147 47.6
AagrBONN_evm.TU.Sc2ySwM_368.2854 Anthoceros agrestis HOM05D003208 ORTHO05D004103 1.1e-26 124.0 186 39.2
CBR_g12754 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-25 120.2 208 38.0
PSO675G0168 Papaver somniferum HOM05D003208 ORTHO05D004103 2.4e-24 116.3 82 65.9
PRCOL_00004940 Prasinoderma coloniale HOM05D003208 ORTHO05D004103 1.6e-17 93.6 167 32.9
MCO16G190 Micromonas commoda HOM05D003208 ORTHO05D004103 4.8e-17 92.0 148 36.5
PRCOL_00006481 Prasinoderma coloniale HOM05D003208 ORTHO05D004103 1.1e-16 90.9 156 37.8
Haze_24868 Corylus avellana HOM05D003208 ORTHO05D004103 5.3e-16 88.6 106 44.3
Ca_27302_v3 Cicer arietinum L. HOM05D003208 ORTHO05D015518 2.0e-15 86.7 134 38.1
Cre03.g179860 Chlamydomonas reinhardtii HOM05D003208 ORTHO05D004103 4.2e-13 79.0 149 35.6
MCO12G374 Micromonas commoda HOM05D003208 ORTHO05D004103 7.1e-13 78.2 150 36.0
Cfa024691 Carpinus fangiana HOM05D003208 ORTHO05D005480 9.3e-13 77.8 152 36.8
MCO11G029 Micromonas commoda HOM05D003208 ORTHO05D004103 1.2e-12 77.4 148 31.1
Lalb_Chr23g0277521 Lupinus albus HOM05D003208 ORTHO05D004103 1.6e-12 77.0 102 43.1
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 3.5e-12 75.9 46 76.1
Thhalv10000064m.g Eutrema salsugineum HOM05D003208 ORTHO05D004103 1.0e-11 74.3 148 36.5
PRCOL_00002419 Prasinoderma coloniale HOM05D003208 ORTHO05D004103 8.7e-11 71.2 149 32.2
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 3.3e-10 69.3 153 34.6
BcaNung05191 Brassica carinata HOM05D003208 ORTHO05D015518 9.6e-10 67.8 148 34.5
Ca_30950_v3 Cicer arietinum L. HOM05D003208 ORTHO05D015518 4.8e-09 65.5 80 40.0
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 4.8e-09 65.5 77 42.9
PRCOL_00005625 Prasinoderma coloniale HOM05D003208 ORTHO05D004103 1.1e-08 64.3 155 31.0
Glyma.05G176233 Glycine max HOM05D003208 ORTHO05D004103 5.3e-08 62.0 54 51.9
Psat4g136360 Pisum sativum HOM05D001184 ORTHO05D003397 3.4e-07 59.3 47 53.2
Ca_03752_v3 Cicer arietinum L. HOM05D003208 ORTHO05D015518 4.5e-07 58.9 79 38.0
SEGI_08254 Sequoiadendron giganteum HOM05D003208 ORTHO05D004103 4.5e-07 58.9 122 31.1


User provided reference genes

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