Gene: AT4G40000

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G40000
  • Transcript Identifier AT4G40000.1
  • Gene Type Coding gene
  • Location Chr4 : 18543989-18547443 : negative

Gene Family Information

  • ID HOM05D003208
  • #Genes/#Species 213/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G40000.1
  • uniprot F4JJ52

Descriptions

  • Description S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
  • Computational description S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT2G22400.1); Has 8835 Blast hits to 8804 proteins in 2376 species: Archae - 282; Bacteria - 6104; Metazoa - 590; Fungi - 311; Plants - 234; Viruses - 0; Other Eukaryotes - 1314 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001510
IEA
GOA DatabaseRNA methylation
GO:0001510
IBA
Gene OntologyRNA methylation1
GO:0001510
IEA
InterProRNA methylation
GO:0030488
IEA
GOA DatabasetRNA methylation
GO:0008033
IEA
GOA DatabasetRNA processing
GO:0032259
IEA
GOA Databasemethylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016428
IEA
Gene OntologytRNA (cytosine-5-)-methyltransferase activity
GO:0016428
IEA
InterProtRNA (cytosine-5-)-methyltransferase activity
GO:0008168
IEA
GOA Databasemethyltransferase activity
GO:0008168
IBA
Gene Ontologymethyltransferase activity1
GO:0008168
IEA
InterPromethyltransferase activity
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0000049
IEA
GOA DatabasetRNA binding
GO:0016740
IEA
GOA Databasetransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR023270 tRNA (C5-cytosine) methyltransferase, NCL1
IPR029063 S-adenosyl-L-methionine-dependent methyltransferase
IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type
IPR023267 RNA (C5-cytosine) methyltransferase
Mapman id Description
16.5.7.9 RNA processing.RNA modification.tRNA methylation.tRNA cytidine-methyltransferase (TRM4)