Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 1.9e-42 175.3 80 100.0
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 8.5e-22 106.7 73 65.8
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 8.5e-22 106.7 71 67.6
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.1e-21 106.3 71 67.6
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.1e-21 106.3 71 67.6
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 1.1e-21 106.3 71 67.6
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.1e-21 106.3 71 67.6
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.1e-21 106.3 71 67.6
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 1.1e-21 106.3 71 67.6
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 1.1e-21 106.3 71 67.6
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 1.1e-21 106.3 71 67.6
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 1.4e-21 105.9 71 66.2
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.4e-21 105.9 71 69.0
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 1.9e-21 105.5 71 67.6
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 3.2e-21 104.8 71 67.6
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 3.2e-21 104.8 71 67.6
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 3.2e-21 104.8 71 67.6
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 3.2e-21 104.8 71 66.2
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 3.2e-21 104.8 71 66.2
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 4.2e-21 104.4 71 66.2
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 4.2e-21 104.4 71 66.2
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 4.2e-21 104.4 71 66.2
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 4.2e-21 104.4 71 66.2
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 4.2e-21 104.4 71 66.2
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 5.5e-21 104.0 71 66.2
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 5.5e-21 104.0 71 64.8
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 5.5e-21 104.0 71 64.8
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 5.5e-21 104.0 71 69.0
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 7.2e-21 103.6 71 66.2
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 7.2e-21 103.6 71 66.2
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 7.2e-21 103.6 71 66.2
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 9.4e-21 103.2 71 64.8
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 9.4e-21 103.2 71 64.8
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 9.4e-21 103.2 71 64.8
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 9.4e-21 103.2 71 66.2
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 9.4e-21 103.2 71 64.8
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 9.4e-21 103.2 71 64.8
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 9.4e-21 103.2 71 64.8
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 9.4e-21 103.2 71 64.8
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 9.4e-21 103.2 71 66.2
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 9.4e-21 103.2 71 66.2
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 9.4e-21 103.2 71 64.8
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 9.4e-21 103.2 71 66.2
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 9.4e-21 103.2 71 69.0
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 1.2e-20 102.8 71 64.8
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 1.2e-20 102.8 71 64.8
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 1.2e-20 102.8 71 66.2
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.2e-20 102.8 73 65.8
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 1.2e-20 102.8 71 69.0
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.6e-20 102.4 71 66.2
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 1.6e-20 102.4 71 64.8
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 1.6e-20 102.4 71 64.8
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 1.6e-20 102.4 71 67.6
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 1.6e-20 102.4 71 64.8
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 1.6e-20 102.4 71 64.8
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 1.6e-20 102.4 71 69.0
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 1.6e-20 102.4 71 64.8
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 1.6e-20 102.4 71 64.8
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 1.6e-20 102.4 71 64.8
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 1.6e-20 102.4 71 67.6
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 2.1e-20 102.1 71 64.8
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 2.1e-20 102.1 71 66.2
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 2.1e-20 102.1 71 66.2
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 2.1e-20 102.1 71 66.2
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 2.1e-20 102.1 71 64.8
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 2.1e-20 102.1 71 64.8
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 2.7e-20 101.7 71 63.4
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 2.7e-20 101.7 71 63.4
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 2.7e-20 101.7 71 67.6
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 2.7e-20 101.7 71 67.6
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 2.7e-20 101.7 71 67.6
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 2.7e-20 101.7 71 64.8
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 2.7e-20 101.7 71 63.4
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 2.7e-20 101.7 71 63.4
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 3.6e-20 101.3 71 67.6
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 3.6e-20 101.3 71 64.8
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 4.7e-20 100.9 71 64.8
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 4.7e-20 100.9 71 64.8
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 4.7e-20 100.9 71 64.8
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 4.7e-20 100.9 71 64.8
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 4.7e-20 100.9 71 64.8
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 4.7e-20 100.9 71 64.8
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 4.7e-20 100.9 71 64.8
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 4.7e-20 100.9 71 64.8
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 4.7e-20 100.9 71 64.8
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 4.7e-20 100.9 71 64.8
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 4.7e-20 100.9 71 64.8
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 4.7e-20 100.9 71 67.6
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 4.7e-20 100.9 71 63.4
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 6.1e-20 100.5 71 63.4
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 7.9e-20 100.1 71 64.8
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 7.9e-20 100.1 71 64.8
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 7.9e-20 100.1 71 64.8
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 7.9e-20 100.1 71 66.2
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 7.9e-20 100.1 71 63.4
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 7.9e-20 100.1 71 66.2
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 1.0e-19 99.8 71 63.4
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.0e-19 99.8 71 63.4
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.0e-19 99.8 71 63.4
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 1.0e-19 99.8 71 63.4
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 1.0e-19 99.8 71 63.4
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 1.4e-19 99.4 71 63.4
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 1.4e-19 99.4 71 63.4
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 1.8e-19 99.0 71 64.8
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 1.8e-19 99.0 71 64.8
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 2.3e-19 98.6 71 63.4
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 2.3e-19 98.6 71 63.4
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 2.3e-19 98.6 71 62.0
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 2.3e-19 98.6 71 62.0
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 2.3e-19 98.6 71 63.4
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 2.3e-19 98.6 71 63.4
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 2.3e-19 98.6 71 63.4
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 2.3e-19 98.6 71 66.2
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 2.3e-19 98.6 71 66.2
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 2.3e-19 98.6 71 63.4
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 2.3e-19 98.6 71 63.4
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 3.9e-19 97.8 71 63.4
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 3.9e-19 97.8 71 62.0
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 5.1e-19 97.4 71 64.8
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 8.8e-19 96.7 71 64.8
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 1.1e-18 96.3 71 60.6
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 1.1e-18 96.3 71 59.2
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 1.1e-18 96.3 71 59.2
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 1.1e-18 96.3 71 59.2
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.1e-18 96.3 70 62.9
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 1.5e-18 95.9 71 62.0
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 3.3e-18 94.7 71 60.6
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 7.4e-18 93.6 71 59.2
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 9.7e-18 93.2 71 60.6
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 2.2e-17 92.0 71 54.9
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 2.8e-17 91.7 71 59.2
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 2.8e-17 91.7 71 54.9
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 2.8e-17 91.7 71 57.7
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 1.1e-16 89.7 71 53.5
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 1.4e-16 89.4 71 59.2
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 1.8e-16 89.0 71 59.2
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 2.6e-15 85.1 68 57.4
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 1.3e-14 82.8 71 50.7
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.7e-14 82.4 73 49.3
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.2e-14 82.0 73 49.3
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 3.8e-14 81.3 56 73.2
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.1e-13 79.7 66 53.0
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 3.2e-13 78.2 55 65.5
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 1.0e-11 73.2 71 49.3
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 3.3e-10 68.2 71 46.5
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 9.7e-10 66.6 43 67.4
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.3e-09 66.2 43 72.1
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 1.7e-09 65.9 70 42.9
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 2.8e-09 65.1 43 67.4
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 2.8e-09 65.1 43 65.1
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 6.3e-09 63.9 43 65.1
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 1.1e-08 63.2 50 60.0
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 9.1e-08 60.1 70 42.9
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 2.7e-07 58.5 63 44.4
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 2.2e-06 55.5 35 65.7
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 8.5e-06 53.5 39 64.1


User provided reference genes

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