Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1629.8 794 100.0
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1410.6 801 84.3
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1396.7 801 83.6
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1352.4 862 76.6
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1338.6 805 80.2
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1228.0 810 74.4
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1223.0 801 75.2
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1214.9 810 73.3
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1213.4 795 73.5
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1212.6 808 73.6
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1211.8 807 72.9
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1211.8 810 73.5
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1211.4 806 73.2
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1211.4 808 72.5
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1208.4 807 73.1
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1207.2 806 73.1
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1206.8 808 73.0
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1205.3 809 72.3
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1203.0 806 73.1
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1200.7 804 72.1
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1200.3 807 72.6
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1200.3 807 72.1
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1199.9 811 71.9
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1199.5 808 72.3
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1198.7 807 72.7
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1198.7 810 72.6
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1197.2 804 71.4
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1196.4 807 71.7
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1196.0 808 72.6
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1195.6 811 72.4
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1191.8 809 72.6
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1191.4 819 71.4
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1190.6 804 71.6
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1190.6 809 71.2
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1190.6 808 72.0
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1190.3 810 71.6
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1189.5 804 71.0
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1186.8 808 71.7
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1186.8 810 70.7
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1185.2 803 72.1
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1185.2 808 71.2
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1184.9 808 71.4
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1184.5 807 71.4
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1183.3 806 71.6
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1182.9 808 71.3
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1182.5 803 71.2
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1182.2 804 71.0
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1181.4 807 71.1
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1180.6 812 71.1
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1179.9 807 70.8
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1179.5 810 72.1
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1179.5 810 72.2
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1179.1 807 71.9
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1178.7 810 72.0
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1177.5 811 71.5
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1176.4 812 71.6
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1176.0 812 70.8
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1173.7 812 69.7
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1173.3 806 71.3
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1172.1 803 70.2
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1171.8 810 71.4
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1169.8 804 70.4
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1169.1 811 70.3
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1168.3 819 69.6
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1167.9 800 71.6
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1166.4 807 71.5
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1162.9 807 70.4
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1160.2 806 69.7
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1159.4 784 72.1
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1156.0 807 69.6
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1154.4 810 69.9
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1151.7 806 69.5
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1151.3 803 69.7
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1151.0 804 69.5
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1150.2 808 69.4
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1149.8 810 69.5
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1149.4 884 64.6
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1148.7 810 69.3
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1148.3 810 69.3
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1148.3 810 69.3
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1147.9 809 69.6
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1145.6 811 69.5
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1144.0 811 69.3
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1140.9 809 69.0
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1140.2 809 68.7
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1139.4 810 68.9
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1139.0 807 69.9
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1136.3 810 68.9
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1134.8 810 68.0
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1129.8 806 69.5
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1128.6 858 65.2
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1128.6 828 68.2
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1125.5 775 70.6
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1123.6 809 68.1
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1121.7 809 68.1
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1120.5 811 68.2
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1116.7 814 67.6
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1116.7 808 68.2
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1114.8 810 67.7
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1112.4 861 64.1
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1110.1 806 68.1
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1109.0 812 67.0
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1104.0 943 60.6
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1102.8 955 60.7
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1096.6 810 68.8
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1079.7 767 69.0
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 3.8e-311 1071.2 809 64.8
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 4.9e-311 1070.8 801 67.3
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 4.4e-304 1047.7 802 65.3
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 9.8e-304 1046.6 810 66.3
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 2.6e-296 1021.9 817 62.9
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 1.3e-292 1009.6 963 55.8
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 5.1e-276 954.5 801 60.2
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 2.6e-272 942.2 606 74.9
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 7.1e-270 934.1 810 60.6
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 1.1e-230 803.9 781 56.1
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 2.0e-179 633.6 860 42.7
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 2.4e-169 600.1 826 41.8
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 6.4e-162 575.5 381 72.2
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 7.8e-152 542.0 797 41.7
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 7.6e-147 525.4 937 35.2
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 2.1e-144 517.3 855 37.5
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 4.5e-115 419.9 417 53.0
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 3.2e-105 387.1 316 60.4
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 1.8e-100 371.3 337 57.6
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 1.0e-95 355.5 244 67.6
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 1.8e-79 301.6 221 69.7
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 5.8e-70 270.0 198 66.2
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 5.2e-63 246.9 171 70.2
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 3.5e-51 207.6 303 41.6
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 3.6e-40 171.0 141 61.7
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 1.5e-38 165.6 189 52.4
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 4.4e-38 164.1 111 70.3
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 2.9e-37 161.4 90 82.2
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 9.6e-33 146.4 104 70.2
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 8.1e-32 143.3 260 40.0
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 2.0e-30 138.7 97 64.9
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 4.6e-27 127.5 190 41.6
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 2.5e-25 121.7 118 55.9
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 5.6e-25 120.6 100 58.0
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 2.1e-24 118.6 110 50.9
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 9.0e-23 113.2 106 54.7
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 2.6e-22 111.7 254 29.5
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 2.2e-21 108.6 175 37.1
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 2.2e-21 108.6 120 48.3
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 2.2e-21 108.6 88 60.2
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 7.1e-20 103.6 181 37.6
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 1.6e-16 92.4 50 80.0
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 2.4e-15 88.6 72 62.5
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 2.0e-14 85.5 57 71.9
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 1.7e-13 82.4 136 41.2
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 2.9e-13 81.6 58 62.1
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 2.5e-12 78.6 42 78.6
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 2.5e-12 78.6 68 57.4
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 1.5e-09 69.3 129 36.4
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 3.3e-09 68.2 60 50.0
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 9.7e-09 66.6 62 56.5
Sabra16G0200100 Salix brachista HOM05D002747 ORTHO05D003069 6.9e-07 60.5 140 32.1
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 1.2e-06 59.7 68 51.5
TWI18G0343 Tripterygium wilfordii HOM05D002747 ORTHO05D003069 2.0e-06 58.9 58 41.4
Potri.001G316400 Populus trichocarpa HOM05D002747 ORTHO05D003069 7.7e-06 57.0 108 35.2
unitig_699.g19210 Utricularia gibba HOM05D004364 ORTHO05D419566 7.7e-06 57.0 53 52.8
Lj3C408G1 Lonicera japonica HOM05D002747 ORTHO05D003069 1.0e-05 56.6 113 34.5
PSO357G0187 Papaver somniferum HOM05D002747 ORTHO05D003069 1.0e-05 56.6 71 39.4


User provided reference genes

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