Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 2.2e-151 538.9 269 100.0
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 6.0e-112 407.9 223 87.9
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 6.0e-112 407.9 223 88.3
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 1.2e-109 400.2 221 88.2
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 6.2e-109 397.9 223 86.1
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 1.4e-108 396.7 257 77.4
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.3e-106 390.2 222 85.1
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 9.3e-105 384.0 224 83.9
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.7e-104 382.5 224 83.5
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 6.0e-104 381.3 224 83.5
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.8e-100 369.8 225 81.8
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 9.9e-99 364.0 223 78.5
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 4.9e-98 361.7 218 79.8
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 2.4e-97 359.4 219 77.6
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 2.7e-96 355.9 223 75.8
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 6.0e-96 354.8 223 77.6
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 6.0e-96 354.8 219 74.0
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 1.3e-95 353.6 217 77.4
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 2.5e-94 349.4 219 76.3
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 2.5e-94 349.4 230 70.4
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 2.5e-94 349.4 223 72.6
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 3.3e-94 349.0 223 73.1
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 9.6e-94 347.4 223 73.1
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 1.6e-93 346.7 224 76.3
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.6e-93 345.5 215 80.5
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.1e-92 344.0 223 72.6
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 1.4e-92 343.6 223 73.5
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 2.4e-92 342.8 223 71.3
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 3.1e-92 342.4 225 72.0
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 4.0e-92 342.0 265 64.9
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 9.0e-92 340.9 223 71.3
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 9.0e-92 340.9 212 74.5
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.5e-91 340.1 213 74.6
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.5e-91 340.1 213 74.6
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 2.0e-91 339.7 233 68.2
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 2.6e-91 339.3 218 71.6
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 4.5e-91 338.6 223 70.4
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 7.6e-91 337.8 223 71.7
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 9.9e-91 337.4 219 71.7
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 1.3e-90 337.0 241 68.0
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 1.7e-90 336.7 234 67.5
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 2.2e-90 336.3 224 71.4
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 6.4e-90 334.7 224 71.9
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 8.4e-90 334.3 223 70.9
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 5.5e-89 331.6 223 67.7
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.5e-89 331.6 221 69.7
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 7.1e-89 331.3 223 66.8
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 3.5e-88 328.9 224 68.3
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 1.0e-87 327.4 260 62.3
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 1.0e-87 327.4 260 62.3
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 2.3e-87 326.2 223 68.6
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 3.9e-87 325.5 238 67.6
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 1.1e-86 323.9 218 67.4
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 3.3e-86 322.4 238 68.1
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 4.3e-86 322.0 214 66.8
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 2.8e-85 319.3 218 67.9
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 2.8e-85 319.3 218 73.9
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 2.8e-85 319.3 251 63.7
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 4.8e-85 318.5 218 67.9
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 4.8e-85 318.5 224 70.1
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.4e-84 317.0 218 67.9
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 1.4e-84 317.0 215 68.8
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 1.4e-84 317.0 254 62.6
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 1.8e-84 316.6 223 68.2
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.2e-83 313.9 218 67.0
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 1.5e-83 313.5 218 67.0
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 3.4e-83 312.4 213 67.1
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 3.4e-83 312.4 218 67.0
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 3.8e-82 308.9 217 66.4
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 3.8e-82 308.9 217 66.4
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 3.8e-82 308.9 217 66.4
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 3.8e-82 308.9 243 63.4
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 6.5e-82 308.1 215 67.0
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 2.7e-80 302.8 218 64.2
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 1.0e-79 300.8 215 64.7
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 3.0e-79 299.3 215 63.7
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 5.1e-79 298.5 215 65.1
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.7e-79 298.1 216 65.3
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 8.7e-79 297.7 215 63.3
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.5e-78 297.0 215 65.6
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 2.5e-78 296.2 202 66.8
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 3.3e-78 295.8 212 65.6
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 3.3e-78 295.8 215 64.2
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 3.3e-78 295.8 218 62.8
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 3.7e-77 292.4 217 61.8
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 3.7e-77 292.4 215 64.2
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 4.8e-77 292.0 212 61.8
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 1.1e-76 290.8 218 59.6
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 2.4e-76 289.7 218 61.5
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.4e-76 289.7 215 61.4
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 2.4e-76 289.7 215 61.4
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 2.4e-76 289.7 215 61.4
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 3.1e-76 289.3 210 64.8
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 4.1e-76 288.9 218 61.0
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 1.5e-75 287.0 215 61.9
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 2.0e-75 286.6 216 62.0
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 2.6e-75 286.2 217 61.8
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 7.6e-75 284.6 223 58.3
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 1.7e-74 283.5 215 60.9
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 2.9e-74 282.7 180 75.0
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 3.2e-73 279.3 202 64.4
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.0e-71 272.7 189 68.3
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 3.9e-71 272.3 217 55.8
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 6.7e-71 271.6 218 60.1
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 7.4e-70 268.1 222 54.5
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.8e-69 266.2 215 60.5
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 1.8e-68 263.5 171 75.4
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.6e-67 259.6 185 65.4
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.5e-66 255.0 221 57.9
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 2.5e-65 253.1 165 73.9
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 3.2e-65 252.7 225 61.3
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 5.5e-65 251.9 170 71.8
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 2.1e-64 250.0 218 56.0
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 5.1e-63 245.4 165 72.1
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 5.1e-63 245.4 165 72.1
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 2.6e-62 243.0 169 67.5
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 3.3e-62 242.7 212 49.1
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 4.4e-62 242.3 151 78.8
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.7e-62 241.9 213 57.7
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 3.7e-61 239.2 164 71.3
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 1.1e-60 237.7 141 78.7
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.4e-60 236.5 136 84.6
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.4e-60 236.5 169 64.5
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.0e-58 231.1 189 60.3
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 1.9e-57 226.9 208 47.1
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 7.2e-57 224.9 127 86.6
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 2.7e-56 223.0 142 74.6
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 7.9e-56 221.5 165 66.1
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 3.0e-55 219.5 175 62.3
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 1.1e-54 217.6 210 47.6
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 8.2e-53 211.5 211 51.7
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.3e-50 204.1 166 59.6
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.5e-49 199.9 131 73.3
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 5.5e-49 198.7 146 68.5
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.1e-48 196.8 143 63.6
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 1.4e-47 194.1 211 44.1
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 1.7e-45 187.2 208 41.3
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 3.7e-45 186.0 211 40.8
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 4.8e-45 185.7 220 36.8
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-43 181.0 138 65.2
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 2.7e-43 179.9 191 45.0
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 5.9e-43 178.7 123 69.9
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.5e-42 175.3 134 63.4
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.3e-39 166.8 118 66.9
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 1.2e-38 164.5 128 66.4
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 2.6e-38 163.3 172 50.6
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 1.7e-34 150.6 100 71.0
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 1.1e-28 131.3 76 78.9
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 1.3e-26 124.4 91 67.0
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.7e-26 124.0 81 70.4
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.2e-20 103.2 143 40.6
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 4.1e-20 102.8 83 63.9
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 1.6e-19 100.9 143 42.7
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 7.8e-19 98.6 70 65.7
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 6.6e-18 95.5 52 76.9
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.6e-18 95.5 111 45.9
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 2.4e-12 77.0 163 28.8
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 7.0e-12 75.5 65 56.9
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 1.0e-10 71.6 152 34.9
Solyc10g055030.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.8e-08 63.5 48 60.4
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 5.2e-07 59.3 54 55.6
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 5.2e-07 59.3 54 55.6
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 1.5e-06 57.8 54 53.7


User provided reference genes

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