Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 7.1e-95 350.5 168 100.0
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 1.7e-56 223.0 106 100.0
SGA_v2.0_scaffold4G02417 Striga asiatica HOM05D004134 ORTHO05D023219 1.8e-42 176.4 129 72.1
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 3.5e-17 92.4 57 73.7
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 5.9e-17 91.7 53 79.2
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.1e-15 87.4 60 68.3
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 1.5e-15 87.0 57 70.2
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 1.5e-15 87.0 57 70.2
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 1.5e-15 87.0 57 70.2
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 1.9e-15 86.7 53 73.6
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.5e-15 86.3 53 75.5
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.5e-15 86.3 53 75.5
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.5e-15 86.3 60 66.7
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 3.3e-15 85.9 51 78.4
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 4.3e-15 85.5 56 69.6
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 9.5e-15 84.3 57 66.7
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 1.6e-14 83.6 51 76.5
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 1.6e-14 83.6 55 70.9
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 1.6e-14 83.6 51 76.5
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 2.1e-14 83.2 51 76.5
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 3.6e-14 82.4 55 67.3
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 3.6e-14 82.4 51 74.5
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 3.6e-14 82.4 51 74.5
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 4.7e-14 82.0 51 74.5
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 4.7e-14 82.0 51 74.5
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 6.1e-14 81.6 50 76.0
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 8.0e-14 81.3 51 72.5
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 8.0e-14 81.3 51 72.5
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 1.0e-13 80.9 52 69.2
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 1.0e-13 80.9 50 72.0
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 1.4e-13 80.5 50 74.0
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 1.4e-13 80.5 51 72.5
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 1.4e-13 80.5 50 74.0
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 1.4e-13 80.5 51 72.5
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 1.4e-13 80.5 51 72.5
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 1.8e-13 80.1 50 74.0
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 1.8e-13 80.1 50 74.0
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.8e-13 80.1 53 67.9
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 3.0e-13 79.3 52 69.2
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 3.0e-13 79.3 50 72.0
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 4.0e-13 79.0 51 68.6
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 4.0e-13 79.0 52 69.2
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 5.2e-13 78.6 50 72.0
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 6.8e-13 78.2 50 70.0
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 6.8e-13 78.2 50 72.0
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 6.8e-13 78.2 50 72.0
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 6.8e-13 78.2 50 72.0
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 6.8e-13 78.2 50 72.0
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 6.8e-13 78.2 51 70.6
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 6.8e-13 78.2 50 74.0
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 6.8e-13 78.2 51 70.6
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 6.8e-13 78.2 53 66.0
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 8.9e-13 77.8 51 72.5
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 8.9e-13 77.8 51 68.6
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 1.2e-12 77.4 50 70.0
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 1.5e-12 77.0 50 70.0
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 1.5e-12 77.0 50 70.0
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 2.0e-12 76.6 50 68.0
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 2.0e-12 76.6 50 68.0
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 2.0e-12 76.6 50 68.0
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 2.0e-12 76.6 50 68.0
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 2.0e-12 76.6 52 67.3
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 2.0e-12 76.6 52 67.3
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 2.6e-12 76.3 50 72.0
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 2.6e-12 76.3 50 68.0
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 2.6e-12 76.3 50 70.0
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 3.4e-12 75.9 50 68.0
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 3.4e-12 75.9 50 72.0
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 4.4e-12 75.5 53 64.2
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 5.7e-12 75.1 50 68.0
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 5.7e-12 75.1 50 66.0
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 5.7e-12 75.1 50 70.0
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 5.7e-12 75.1 50 70.0
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 5.7e-12 75.1 50 70.0
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 5.7e-12 75.1 50 70.0
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 7.5e-12 74.7 48 68.8
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 7.5e-12 74.7 50 68.0
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 7.5e-12 74.7 51 66.7
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 7.5e-12 74.7 53 66.0
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 7.5e-12 74.7 50 70.0
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 7.5e-12 74.7 50 70.0
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 7.5e-12 74.7 50 70.0
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 7.5e-12 74.7 50 70.0
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 7.5e-12 74.7 50 70.0
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 1.3e-11 73.9 50 66.0
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.3e-11 73.9 50 66.0
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 1.3e-11 73.9 51 64.7
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 1.3e-11 73.9 55 61.8
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.3e-11 73.9 55 61.8
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.3e-11 73.9 55 61.8
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.3e-11 73.9 55 61.8
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 1.3e-11 73.9 51 64.7
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 1.3e-11 73.9 51 64.7
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 1.3e-11 73.9 55 61.8
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 1.3e-11 73.9 55 61.8
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 1.7e-11 73.6 50 70.0
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 1.7e-11 73.6 50 66.0
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 2.9e-11 72.8 52 63.5
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 3.7e-11 72.4 50 68.0
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 3.7e-11 72.4 50 66.0
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 3.7e-11 72.4 55 60.0
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 4.9e-11 72.0 51 64.7
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 6.4e-11 71.6 50 66.0
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 6.4e-11 71.6 50 66.0
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 6.4e-11 71.6 54 68.5
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 8.3e-11 71.2 50 66.0
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.1e-10 70.9 51 62.7
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.8e-10 70.1 51 62.7
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 5.4e-10 68.6 53 60.4
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 9.2e-10 67.8 50 64.0
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 9.2e-10 67.8 61 60.7
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 1.2e-09 67.4 49 65.3
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 1.6e-09 67.0 50 64.0
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 1.6e-09 67.0 50 64.0
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.6e-09 67.0 50 64.0
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 1.6e-09 67.0 50 64.0
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 3.5e-09 65.9 50 62.0
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 3.5e-09 65.9 50 62.0
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 3.5e-09 65.9 50 62.0
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 3.5e-09 65.9 50 62.0
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 3.5e-09 65.9 50 62.0
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 3.5e-09 65.9 50 62.0
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 4.6e-09 65.5 50 62.0
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 4.6e-09 65.5 50 62.0
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 4.6e-09 65.5 50 62.0
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 5.9e-09 65.1 50 62.0
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 7.8e-09 64.7 50 62.0
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 1.0e-08 64.3 50 64.0
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 1.7e-08 63.5 50 60.0
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 1.7e-08 63.5 50 60.0
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 1.7e-08 63.5 52 57.7
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 3.0e-08 62.8 50 60.0
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 5.6e-07 58.5 37 70.3
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 3.6e-06 55.8 52 46.2
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 6.2e-06 55.1 39 61.5


User provided reference genes

Program Settings